Adaptive Peptide Molecule as the Promising Highly-Efficient Gas-Sensor Material: In Silico Study

Gas sensors are currently employed in various applications in fields such as medicine, ecology, and food processing, and serve as monitoring tools for the protection of human health, safety, and quality of life. Herein, we discuss a promising direction in the research and development of gas sensors...

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Published inSensors (Basel, Switzerland) Vol. 23; no. 13; p. 5780
Main Authors Petrunin, Alexander A., Rabchinskii, Maxim K., Sysoev, Victor V., Glukhova, Olga E.
Format Journal Article
LanguageEnglish
Published Switzerland MDPI AG 21.06.2023
MDPI
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ISSN1424-8220
1424-8220
DOI10.3390/s23135780

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Abstract Gas sensors are currently employed in various applications in fields such as medicine, ecology, and food processing, and serve as monitoring tools for the protection of human health, safety, and quality of life. Herein, we discuss a promising direction in the research and development of gas sensors based on peptides—biomolecules with high selectivity and sensitivity to various gases. Thanks to the technique developed in this work, which uses a framework based on the density-functional tight-binding theory (DFTB), the most probable adsorption centers were identified and used to describe the interaction of some analyte molecules with peptides. The DFTB method revealed that the physical adsorption of acetone, ammonium, benzene, ethanol, hexane, methanol, toluene, and trinitrotoluene had a binding energy in the range from −0.28 eV to −1.46 eV. It was found that peptides may adapt to the approaching analyte by changing their volume up to a maximum value of approx. 13%, in order to confine electron clouds around the adsorbed molecule. Based on the results obtained, the prospects for using the proposed peptide configurations in gas sensor devices are good.
AbstractList Gas sensors are currently employed in various applications in fields such as medicine, ecology, and food processing, and serve as monitoring tools for the protection of human health, safety, and quality of life. Herein, we discuss a promising direction in the research and development of gas sensors based on peptides—biomolecules with high selectivity and sensitivity to various gases. Thanks to the technique developed in this work, which uses a framework based on the density-functional tight-binding theory (DFTB), the most probable adsorption centers were identified and used to describe the interaction of some analyte molecules with peptides. The DFTB method revealed that the physical adsorption of acetone, ammonium, benzene, ethanol, hexane, methanol, toluene, and trinitrotoluene had a binding energy in the range from −0.28 eV to −1.46 eV. It was found that peptides may adapt to the approaching analyte by changing their volume up to a maximum value of approx. 13%, in order to confine electron clouds around the adsorbed molecule. Based on the results obtained, the prospects for using the proposed peptide configurations in gas sensor devices are good.
Gas sensors are currently employed in various applications in fields such as medicine, ecology, and food processing, and serve as monitoring tools for the protection of human health, safety, and quality of life. Herein, we discuss a promising direction in the research and development of gas sensors based on peptides-biomolecules with high selectivity and sensitivity to various gases. Thanks to the technique developed in this work, which uses a framework based on the density-functional tight-binding theory (DFTB), the most probable adsorption centers were identified and used to describe the interaction of some analyte molecules with peptides. The DFTB method revealed that the physical adsorption of acetone, ammonium, benzene, ethanol, hexane, methanol, toluene, and trinitrotoluene had a binding energy in the range from -0.28 eV to -1.46 eV. It was found that peptides may adapt to the approaching analyte by changing their volume up to a maximum value of approx. 13%, in order to confine electron clouds around the adsorbed molecule. Based on the results obtained, the prospects for using the proposed peptide configurations in gas sensor devices are good.Gas sensors are currently employed in various applications in fields such as medicine, ecology, and food processing, and serve as monitoring tools for the protection of human health, safety, and quality of life. Herein, we discuss a promising direction in the research and development of gas sensors based on peptides-biomolecules with high selectivity and sensitivity to various gases. Thanks to the technique developed in this work, which uses a framework based on the density-functional tight-binding theory (DFTB), the most probable adsorption centers were identified and used to describe the interaction of some analyte molecules with peptides. The DFTB method revealed that the physical adsorption of acetone, ammonium, benzene, ethanol, hexane, methanol, toluene, and trinitrotoluene had a binding energy in the range from -0.28 eV to -1.46 eV. It was found that peptides may adapt to the approaching analyte by changing their volume up to a maximum value of approx. 13%, in order to confine electron clouds around the adsorbed molecule. Based on the results obtained, the prospects for using the proposed peptide configurations in gas sensor devices are good.
Gas sensors are currently employed in various applications in fields such as medicine, ecology, and food processing, and serve as monitoring tools for the protection of human health, safety, and quality of life. Herein, we discuss a promising direction in the research and development of gas sensors based on peptides-biomolecules with high selectivity and sensitivity to various gases. Thanks to the technique developed in this work, which uses a framework based on the density-functional tight-binding theory (DFTB), the most probable adsorption centers were identified and used to describe the interaction of some analyte molecules with peptides. The DFTB method revealed that the physical adsorption of acetone, ammonium, benzene, ethanol, hexane, methanol, toluene, and trinitrotoluene had a binding energy in the range from -0.28 eV to -1.46 eV. It was found that peptides may adapt to the approaching analyte by changing their volume up to a maximum value of approx. 13%, in order to confine electron clouds around the adsorbed molecule. Based on the results obtained, the prospects for using the proposed peptide configurations in gas sensor devices are good.
Audience Academic
Author Glukhova, Olga E.
Rabchinskii, Maxim K.
Petrunin, Alexander A.
Sysoev, Victor V.
AuthorAffiliation 1 Institute of Physics, Saratov State University, Astrakhanskaya Street 83, 410012 Saratov, Russia; sacha.petrynin@gmail.com
3 Department of Physics, Yuri Gagarin State Technical University of Saratov, Polytechnicheskaya Street 77, 410054 Saratov, Russia
2 Ioffe Institute, Politekhnicheskaya Street 26, 194021 Saint Petersburg, Russia; rabchinskii@mail.ioffe.ru
4 Laboratory of Biomedical Nanotechnology, I.M. Sechenov First Moscow State Medical University, Trubetskaya Street 8-2, 119991 Moscow, Russia
AuthorAffiliation_xml – name: 3 Department of Physics, Yuri Gagarin State Technical University of Saratov, Polytechnicheskaya Street 77, 410054 Saratov, Russia
– name: 4 Laboratory of Biomedical Nanotechnology, I.M. Sechenov First Moscow State Medical University, Trubetskaya Street 8-2, 119991 Moscow, Russia
– name: 1 Institute of Physics, Saratov State University, Astrakhanskaya Street 83, 410012 Saratov, Russia; sacha.petrynin@gmail.com
– name: 2 Ioffe Institute, Politekhnicheskaya Street 26, 194021 Saint Petersburg, Russia; rabchinskii@mail.ioffe.ru
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  givenname: Maxim K.
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  givenname: Victor V.
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BackLink https://www.ncbi.nlm.nih.gov/pubmed/37447630$$D View this record in MEDLINE/PubMed
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CitedBy_id crossref_primary_10_1016_j_mtcomm_2023_107831
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Keywords DFTB method
peptide
gas sensors
adsorption center
analyte
electron density
local minimum of energy
binding energy
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Snippet Gas sensors are currently employed in various applications in fields such as medicine, ecology, and food processing, and serve as monitoring tools for the...
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SubjectTerms Adsorption
Amino acids
analyte
Approximation
binding energy
Carbon
Computer simulation
DFTB method
electron density
Energy
Force and energy
gas sensors
Gases
Graphene
Internet of Things
Machine learning
Methods
Methyl salicylate
Nanomaterials
Nanoparticles
Pattern recognition systems
peptide
Peptides
Sensors
Software
VOCs
Volatile organic compounds
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Title Adaptive Peptide Molecule as the Promising Highly-Efficient Gas-Sensor Material: In Silico Study
URI https://www.ncbi.nlm.nih.gov/pubmed/37447630
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https://pubmed.ncbi.nlm.nih.gov/PMC10346805
https://doaj.org/article/9ca7f8175a0d48a6ac50d6c0a5b6e156
Volume 23
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