Differences in the DNA methylome of T cells in adults with asthma of varying severity

• Published in: Clinical epigenetics Vol. 16; no. 1; pp. 139 - 17
• Main Authors: Liao, Yixuan, Cavalcante, Raymond G., Waller, Jonathan B., Deng, Furong, Scruggs, Anne M., Huang, Yvonne J., Atasoy, Ulus, Chen, Yahong, Huang, Steven K.
• Format: Journal Article
• Language: English
• Published: London BioMed Central 08.10.2024; BioMed Central Ltd; BMC
• Subjects: Adult; Asthma; Asthma - genetics; Asthma - immunology; B cells; Biomedical and Life Sciences; Biomedicine; China; Comparative analysis; DNA; DNA methylation; DNA Methylation - genetics; Epigenesis, Genetic; Epigenetic inheritance; Epigenetics; Epigenome - genetics; Female; Fraction of exhaled nitric oxide; Gene Function; Genes; Human Genetics; Humans; Inflammation; Male; Methylation; Middle Aged; Nitric oxide; Physiological aspects; Severity of Illness Index; T cells; T-Lymphocytes - immunology; T-Lymphocytes - metabolism; China; DNA methylation; Epigenetics; Fraction of exhaled nitric oxide
• ISSN: 1868-7083; 1868-7075; 1868-7083
• DOI: 10.1186/s13148-024-01750-7

Background DNA methylation plays a critical role in asthma development, but differences in DNA methylation among adults with varying asthma severity are less well-defined. Objective To examine how DNA methylomic patterns differ among adults with asthma based on asthma severity and airway inflammation. Methods Peripheral blood T cells from 35 adults with asthma in Beijing, China, were serially collected over time (130 samples total) and analyzed for global DNA methylation using the Illumina MethylationEPIC Array. Differential methylation was compared among subjects with varying airway inflammation and severity, as measured by fraction of exhaled nitric oxide, forced expiratory volume in one second (FEV1), and Asthma Control Test (ACT) scores. Results Significant differences in DNA methylation were noted among subjects with different degrees of airway inflammation and asthma severity. These differences in DNA methylation were annotated to genes that were enriched in pathways related to asthma or T cell function and included gene ontology categories related to MHC class II assembly, T cell activation, interleukin (IL)-1, and IL-12. Genes related to P450 drug metabolism, glutathione metabolism, and developmental pathways were also differentially methylated in comparisons between subjects with high vs low FEV1 and ACT. Notable genes that were differentially methylated based on asthma severity included RUNX3 , several members of the HLA family, AGT , PTPRC , PTPRJ , and several genes downstream of the JAK2 and TNF signaling pathway. Conclusion These findings demonstrate how adults with asthma of varying severity possess differences in peripheral blood T cell DNA methylation that contribute to differences in clinical indices of asthma.