LPmerge: an R package for merging genetic maps by linear programming
Consensus genetic maps constructed from multiple populations are an important resource for both basic and applied research, including genome-wide association analysis, genome sequence assembly and studies of evolution. The LPmerge software uses linear programming to efficiently minimize the mean abs...
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| Published in | Bioinformatics Vol. 30; no. 11; pp. 1623 - 1624 |
|---|---|
| Main Authors | , |
| Format | Journal Article |
| Language | English |
| Published |
England
Oxford University Press (OUP)
01.06.2014
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| Subjects | |
| Online Access | Get full text |
| ISSN | 1367-4803 1367-4811 1367-4811 1460-2059 |
| DOI | 10.1093/bioinformatics/btu091 |
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| Abstract | Consensus genetic maps constructed from multiple populations are an important resource for both basic and applied research, including genome-wide association analysis, genome sequence assembly and studies of evolution. The LPmerge software uses linear programming to efficiently minimize the mean absolute error between the consensus map and the linkage maps from each population. This minimization is performed subject to linear inequality constraints that ensure the ordering of the markers in the linkage maps is preserved. When marker order is inconsistent between linkage maps, a minimum set of ordinal constraints is deleted to resolve the conflicts.
Availability and implementation: LPmerge is on CRAN at http://cran.r-project.org/web/packages/LPmerge.
Contact: endelman@wisc.edu
Supplementary information: Supplementary data are available at Bioinformatics online. |
|---|---|
| AbstractList | Consensus genetic maps constructed from multiple populations are an important resource for both basic and applied research, including genome-wide association analysis, genome sequence assembly and studies of evolution. The LPmerge software uses linear programming to efficiently minimize the mean absolute error between the consensus map and the linkage maps from each population. This minimization is performed subject to linear inequality constraints that ensure the ordering of the markers in the linkage maps is preserved. When marker order is inconsistent between linkage maps, a minimum set of ordinal constraints is deleted to resolve the conflicts. Consensus genetic maps constructed from multiple populations are an important resource for both basic and applied research, including genome-wide association analysis, genome sequence assembly, and studies of evolution. The LPmerge software uses linear programming (LP) to efficiently minimize the mean absolute error between the consensus map and the linkage maps from each population. This minimization is performed subject to linear inequality constraints that ensure the ordering of the markers in the linkage maps is preserved. When marker order is inconsistent between linkage maps, a minimum set of ordinal constraints is deleted to resolve the conflicts. Consensus genetic maps constructed from multiple populations are an important resource for both basic and applied research, including genome-wide association analysis, genome sequence assembly and studies of evolution. The LPmerge software uses linear programming to efficiently minimize the mean absolute error between the consensus map and the linkage maps from each population. This minimization is performed subject to linear inequality constraints that ensure the ordering of the markers in the linkage maps is preserved. When marker order is inconsistent between linkage maps, a minimum set of ordinal constraints is deleted to resolve the conflicts.UNLABELLEDConsensus genetic maps constructed from multiple populations are an important resource for both basic and applied research, including genome-wide association analysis, genome sequence assembly and studies of evolution. The LPmerge software uses linear programming to efficiently minimize the mean absolute error between the consensus map and the linkage maps from each population. This minimization is performed subject to linear inequality constraints that ensure the ordering of the markers in the linkage maps is preserved. When marker order is inconsistent between linkage maps, a minimum set of ordinal constraints is deleted to resolve the conflicts.LPmerge is on CRAN at http://cran.r-project.org/web/packages/LPmerge.AVAILABILITY AND IMPLEMENTATIONLPmerge is on CRAN at http://cran.r-project.org/web/packages/LPmerge. Consensus genetic maps constructed from multiple populations are an important resource for both basic and applied research, including genome-wide association analysis, genome sequence assembly and studies of evolution. The LPmerge software uses linear programming to efficiently minimize the mean absolute error between the consensus map and the linkage maps from each population. This minimization is performed subject to linear inequality constraints that ensure the ordering of the markers in the linkage maps is preserved. When marker order is inconsistent between linkage maps, a minimum set of ordinal constraints is deleted to resolve the conflicts. LPmerge is on CRAN at http://cran.r-project.org/web/packages/LPmerge. Consensus genetic maps constructed from multiple populations are an important resource for both basic and applied research, including genome-wide association analysis, genome sequence assembly and studies of evolution. The LPmerge software uses linear programming to efficiently minimize the mean absolute error between the consensus map and the linkage maps from each population. This minimization is performed subject to linear inequality constraints that ensure the ordering of the markers in the linkage maps is preserved. When marker order is inconsistent between linkage maps, a minimum set of ordinal constraints is deleted to resolve the conflicts. Availability and implementation: LPmerge is on CRAN at http://cran.r-project.org/web/packages/LPmerge. Contact: endelman@wisc.edu Supplementary information: Supplementary data are available at Bioinformatics online. |
| Author | Endelman, Jeffrey B. Plomion, Christophe |
| Author_xml | – sequence: 1 givenname: Jeffrey B. surname: Endelman fullname: Endelman, Jeffrey B. – sequence: 2 givenname: Christophe surname: Plomion fullname: Plomion, Christophe |
| BackLink | https://www.ncbi.nlm.nih.gov/pubmed/24532720$$D View this record in MEDLINE/PubMed https://hal.inrae.fr/hal-02637910$$DView record in HAL |
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| Cites_doi | 10.1287/ijoc.13.3.210.12632 10.1534/g3.112.002428 10.1109/TCBB.2010.35 10.3835/plantgenome2011.08.0023 10.1186/1471-2164-7-206 10.1371/journal.pone.0041213 10.1016/0304-3975(94)00254-G 10.1186/1471-2164-12-407 10.1371/journal.pone.0047864 |
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| References | Amaldi (2023012710545212200_btu091-B1) 1995; 147 Khan (2023012710545212200_btu091-B5) 2012; 7 Gautami (2023012710545212200_btu091-B4) 2012; 7 Endelman (2023012710545212200_btu091-B3) 2011; 12 Muñoz-Amatriaín (2023012710545212200_btu091-B6) 2011; 4 Van Ooijen (2023012710545212200_btu091-B8) 2006 Chinneck (2023012710545212200_btu091-B2) 2001; 13 Wu (2023012710545212200_btu091-B10) 2011; 8 Ronin (2023012710545212200_btu091-B7) 2012; 2 Wenzl (2023012710545212200_btu091-B9) 2006; 7 |
| References_xml | – volume: 13 start-page: 210 year: 2001 ident: 2023012710545212200_btu091-B2 article-title: Fast heuristics for the maximum feasible subsystem problem publication-title: INFORMS J. Comput. doi: 10.1287/ijoc.13.3.210.12632 – volume: 2 start-page: 537 year: 2012 ident: 2023012710545212200_btu091-B7 article-title: Two-phase analysis in consensus genetic mapping publication-title: G3 (Bethesda) doi: 10.1534/g3.112.002428 – volume: 8 start-page: 381 year: 2011 ident: 2023012710545212200_btu091-B10 article-title: Accurate construction of consensus genetic maps via integer linear programming publication-title: IEEE/ACM Trans. Comput. Biol. Bioinform. doi: 10.1109/TCBB.2010.35 – volume: 4 start-page: 238 year: 2011 ident: 2023012710545212200_btu091-B6 article-title: An improved consensus linkage map of barley based on flow-sorted chromosomes and single nucleotide polymorphism markers publication-title: Plant Genome doi: 10.3835/plantgenome2011.08.0023 – volume: 7 start-page: 206 year: 2006 ident: 2023012710545212200_btu091-B9 article-title: A high-density consensus map of barley linking DArT markers to SSR, RFLP and STS loci and agricultural traits publication-title: BMC Genomics doi: 10.1186/1471-2164-7-206 – volume: 7 start-page: e41213 year: 2012 ident: 2023012710545212200_btu091-B4 article-title: An international reference consensus genetic map with 897 marker loci based on 11 mapping populations for tetraploid groundnut (Arachis hypogaea L.) publication-title: PLoS One doi: 10.1371/journal.pone.0041213 – volume: 147 start-page: 181 year: 1995 ident: 2023012710545212200_btu091-B1 article-title: The complexity and approximability of finding maximum feasible subsystems of linear relations publication-title: Theor. Comput. Sci. doi: 10.1016/0304-3975(94)00254-G – volume: 12 start-page: 407 year: 2011 ident: 2023012710545212200_btu091-B3 article-title: New algorithm improves fine structure of the barley consensus SNP map publication-title: BMC Genomics doi: 10.1186/1471-2164-12-407 – volume: 7 start-page: e47864 year: 2012 ident: 2023012710545212200_btu091-B5 article-title: A multi-population consensus genetic map reveals inconsistent marker order among maps likely attributed to structural variations in the apple genome publication-title: PLoS One doi: 10.1371/journal.pone.0047864 – volume-title: JoinMap 4: software for the calculation of genetic linkage maps in experimental populations year: 2006 ident: 2023012710545212200_btu091-B8 |
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| SubjectTerms | Algorithms Chromosome Mapping - methods Genetic Linkage Genetics Life Sciences Linear programming Linkages MAP (programming language) Markers Order disorder Populations Programming, Linear Software |
| Title | LPmerge: an R package for merging genetic maps by linear programming |
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