Bayesian exponential random graph modeling of whole-brain structural networks across lifespan

Descriptive neural network analyses have provided important insights into the organization of structural and functional networks in the human brain. However, these analyses have limitations for inter-subject or between-group comparisons in which network sizes and edge densities may differ, such as i...

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Published inNeuroImage (Orlando, Fla.) Vol. 135; pp. 79 - 91
Main Authors Sinke, Michel R.T., Dijkhuizen, Rick M., Caimo, Alberto, Stam, Cornelis J., Otte, Willem M.
Format Journal Article
LanguageEnglish
Published United States Elsevier Inc 15.07.2016
Elsevier Limited
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Online AccessGet full text
ISSN1053-8119
1095-9572
1095-9572
DOI10.1016/j.neuroimage.2016.04.066

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Abstract Descriptive neural network analyses have provided important insights into the organization of structural and functional networks in the human brain. However, these analyses have limitations for inter-subject or between-group comparisons in which network sizes and edge densities may differ, such as in studies on neurodevelopment or brain diseases. Furthermore, descriptive neural network analyses lack an appropriate generic null model and a unifying framework. These issues may be solved with an alternative framework based on a Bayesian generative modeling approach, i.e. Bayesian exponential random graph modeling (ERGM), which explains an observed network by the joint contribution of local network structures or features (for which we chose neurobiologically meaningful constructs such as connectedness, local clustering or global efficiency). We aimed to identify how these local network structures (or features) are evolving across the life-span, and how sensitive these features are to random and targeted lesions. To that aim we applied Bayesian exponential random graph modeling on structural networks derived from whole-brain diffusion tensor imaging-based tractography of 382 healthy adult subjects (age range: 20.2–86.2years), with and without lesion simulations. Networks were successfully generated from four local network structures that resulted in excellent goodness-of-fit, i.e. measures of connectedness, local clustering, global efficiency and intrahemispheric connectivity. We found that local structures (i.e. connectedness, local clustering and global efficiency), which give rise to the global network topology, were stable even after lesion simulations across the lifespan, in contrast to overall descriptive network changes – e.g. lower network density and higher clustering – during aging, and despite clear effects of hub damage on network topologies. Our study demonstrates the potential of Bayesian generative modeling to characterize the underlying network structures that drive the brain's global network topology at different developmental stages and/or under pathological conditions. •Bayesian ERGM can characterize brain networks based on a few local structures.•Local structures that shape the global network topology are stable across lifespan.•Local network structures are robust to simulated random and hub node damage.
AbstractList Descriptive neural network analyses have provided important insights into the organization of structural and functional networks in the human brain. However, these analyses have limitations for inter-subject or between-group comparisons in which network sizes and edge densities may differ, such as in studies on neurodevelopment or brain diseases. Furthermore, descriptive neural network analyses lack an appropriate generic null model and a unifying framework. These issues may be solved with an alternative framework based on a Bayesian generative modeling approach, i.e. Bayesian exponential random graph modeling (ERGM), which explains an observed network by the joint contribution of local network structures or features (for which we chose neurobiologically meaningful constructs such as connectedness, local clustering or global efficiency). We aimed to identify how these local network structures (or features) are evolving across the life-span, and how sensitive these features are to random and targeted lesions. To that aim we applied Bayesian exponential random graph modeling on structural networks derived from whole-brain diffusion tensor imaging-based tractography of 382 healthy adult subjects (age range: 20.2-86.2years), with and without lesion simulations. Networks were successfully generated from four local network structures that resulted in excellent goodness-of-fit, i.e. measures of connectedness, local clustering, global efficiency and intrahemispheric connectivity. We found that local structures (i.e. connectedness, local clustering and global efficiency), which give rise to the global network topology, were stable even after lesion simulations across the lifespan, in contrast to overall descriptive network changes - e.g. lower network density and higher clustering - during aging, and despite clear effects of hub damage on network topologies. Our study demonstrates the potential of Bayesian generative modeling to characterize the underlying network structures that drive the brain's global network topology at different developmental stages and/or under pathological conditions.
Descriptive neural network analyses have provided important insights into the organization of structural and functional networks in the human brain. However, these analyses have limitations for inter-subject or between-group comparisons in which network sizes and edge densities may differ, such as in studies on neurodevelopment or brain diseases. Furthermore, descriptive neural network analyses lack an appropriate generic null model and a unifying framework. These issues may be solved with an alternative framework based on a Bayesian generative modeling approach, i.e. Bayesian exponential random graph modeling (ERGM), which explains an observed network by the joint contribution of local network structures or features (for which we chose neurobiologically meaningful constructs such as connectedness, local clustering or global efficiency). We aimed to identify how these local network structures (or features) are evolving across the life-span, and how sensitive these features are to random and targeted lesions. To that aim we applied Bayesian exponential random graph modeling on structural networks derived from whole-brain diffusion tensor imaging-based tractography of 382 healthy adult subjects (age range: 20.2–86.2years), with and without lesion simulations. Networks were successfully generated from four local network structures that resulted in excellent goodness-of-fit, i.e. measures of connectedness, local clustering, global efficiency and intrahemispheric connectivity. We found that local structures (i.e. connectedness, local clustering and global efficiency), which give rise to the global network topology, were stable even after lesion simulations across the lifespan, in contrast to overall descriptive network changes – e.g. lower network density and higher clustering – during aging, and despite clear effects of hub damage on network topologies. Our study demonstrates the potential of Bayesian generative modeling to characterize the underlying network structures that drive the brain's global network topology at different developmental stages and/or under pathological conditions. •Bayesian ERGM can characterize brain networks based on a few local structures.•Local structures that shape the global network topology are stable across lifespan.•Local network structures are robust to simulated random and hub node damage.
Author Stam, Cornelis J.
Sinke, Michel R.T.
Caimo, Alberto
Dijkhuizen, Rick M.
Otte, Willem M.
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Keywords Bayesian statistics
Tractography
Generative network analysis
P model
Aging
Connectome
Diffusion tensor imaging
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SSID ssj0009148
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Snippet Descriptive neural network analyses have provided important insights into the organization of structural and functional networks in the human brain. However,...
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SubjectTerms Adult
Adults
Age
Aged
Aged, 80 and over
Aging
Bayes Theorem
Bayesian statistics
Brain - anatomy & histology
Brain - physiology
Connectome
Connectome - methods
Diffusion Magnetic Resonance Imaging
Diffusion Tensor Imaging
Efficiency
Generative network analysis
Growth models
Humans
Image Processing, Computer-Assisted
Middle Aged
Models, Neurological
Neural networks
Neural Pathways - anatomy & histology
Neural Pathways - physiology
Older people
P model
Signal Processing, Computer-Assisted
Studies
Tractography
Young Adult
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Title Bayesian exponential random graph modeling of whole-brain structural networks across lifespan
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https://dx.doi.org/10.1016/j.neuroimage.2016.04.066
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