Parallel comparison of Illumina RNA-Seq and Affymetrix microarray platforms on transcriptomic profiles generated from 5-aza-deoxy-cytidine treated HT-29 colon cancer cells and simulated datasets - Xu, Xiao; Zhang, Yuanhao; Williams, Jennie; Antoniou, Eric; McCombie, W Richard; Wu, Song; Zhu, Wei; Davidson, Nicholas O; Denoya, Paula; Li, Ellen (BMC bioinformatics, 2013)
Keywords: Algorithms; Azacitidine; Bias; Bioinformatics; Biomedical and Life Sciences; Colon; Colonic Neoplasms - genetics; Computational Biology/Bioinformatics; Computer Appl. in Life Sciences; Correlation analysis; Correlation coefficient; DNA methylation; Gene expression; Gene Expression Profiling - methods; Genomes; HT29 Cells; Humans; Laboratories; Life Sciences; Medical research; Meetings; Methodology; Methodology Article; Methods; Microarrays; Oligonucleotide Array Sequence Analysis - methods; Polymerase chain reaction; Regression Analysis; RNA, Neoplasm - genetics; Sensitivity and Specificity; Sequence Analysis, RNA - methods; Differentially Express Gene; Differentially Express Gene List; Platform Comparison; Fixed Bias; Proportional Bias