The Effects of Captivity on the Mammalian Gut Microbiome
Recent studies increasingly note the effect of captivity or the built environment on the microbiome of humans and other animals. As symbiotic microbes are essential to many aspects of biology (e.g., digestive and immune functions), it is important to understand how lifestyle differences can impact t...
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| Published in | Integrative and comparative biology Vol. 57; no. 4; pp. 690 - 704 |
|---|---|
| Main Authors | , , , , , , , , , , , , , , , , , , |
| Format | Journal Article |
| Language | English |
| Published |
England
Oxford University Press
01.10.2017
Oxford University Press (OUP) |
| Subjects | |
| Online Access | Get full text |
| ISSN | 1540-7063 1557-7023 1557-7023 |
| DOI | 10.1093/icb/icx090 |
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| Abstract | Recent studies increasingly note the effect of captivity or the built environment on the microbiome of humans and other animals. As symbiotic microbes are essential to many aspects of biology (e.g., digestive and immune functions), it is important to understand how lifestyle differences can impact the microbiome, and, consequently, the health of hosts. Animals living in captivity experience a range of changes that may influence the gut bacteria, such as diet changes, treatments, and reduced contact with other individuals, species and variable environmental substrates that act as sources of bacterial diversity. Thus far, initial results from previous studies point to a pattern of decreased bacterial diversity in captive animals. However, these studies are relatively limited in the scope of species that have been examined. Here we present a dataset that includes paired wild and captive samples from mammalian taxa across six Orders to investigate generalizable patterns of the effects captivity on mammalian gut bacteria. In comparing the wild to the captive condition, our results indicate that alpha diversity of the gut bacteria remains consistent in some mammalian hosts (bovids, giraffes, anteaters, and aardvarks), declines in the captive condition in some hosts (canids, primates, and equids), and increases in the captive condition in one host taxon (rhinoceros). Differences in gut bacterial beta diversity between the captive and wild state were observed for most of the taxa surveyed, except the even-toed ungulates (bovids and giraffes). Additionally, beta diversity variation was also strongly influenced by host taxonomic group, diet type, and gut fermentation physiology. Bacterial taxa that demonstrated larger shifts in relative abundance between the captive and wild states included members of the Firmicutes and Bacteroidetes. Overall, the patterns that we observe will inform a range of disciplines from veterinary practice to captive breeding efforts for biological conservation. Furthermore, bacterial taxa that persist in the captive state provide unique insight into symbiotic relationships with the host. |
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| AbstractList | Recent studies increasingly note the effect of captivity or the built environment on the microbiome of humans and other animals. As symbiotic microbes are essential to many aspects of biology (e.g., digestive and immune functions), it is important to understand how lifestyle differences can impact the microbiome, and, consequently, the health of hosts. Animals living in captivity experience a range of changes that may influence the gut bacteria, such as diet changes, treatments, and reduced contact with other individuals, species and variable environmental substrates that act as sources of bacterial diversity. Thus far, initial results from previous studies point to a pattern of decreased bacterial diversity in captive animals. However, these studies are relatively limited in the scope of species that have been examined. Here we present a dataset that includes paired wild and captive samples from mammalian taxa across six Orders to investigate generalizable patterns of the effects captivity on mammalian gut bacteria. In comparing the wild to the captive condition, our results indicate that alpha diversity of the gut bacteria remains consistent in some mammalian hosts (bovids, giraffes, anteaters, and aardvarks), declines in the captive condition in some hosts (canids, primates, and equids), and increases in the captive condition in one host taxon (rhinoceros). Differences in gut bacterial beta diversity between the captive and wild state were observed for most of the taxa surveyed, except the even-toed ungulates (bovids and giraffes). Additionally, beta diversity variation was also strongly influenced by host taxonomic group, diet type, and gut fermentation physiology. Bacterial taxa that demonstrated larger shifts in relative abundance between the captive and wild states included members of the Firmicutes and Bacteroidetes. Overall, the patterns that we observe will inform a range of disciplines from veterinary practice to captive breeding efforts for biological conservation. Furthermore, bacterial taxa that persist in the captive state provide unique insight into symbiotic relationships with the host. Recent studies increasingly note the effect of captivity or the built environment on the microbiome of humans and other animals. As symbiotic microbes are essential to many aspects of biology (e.g., digestive and immune functions), it is important to understand how lifestyle differences can impact the microbiome, and, consequently, the health of hosts. Animals living in captivity experience a range of changes that may influence the gut bacteria, such as diet changes, treatments, and reduced contact with other individuals, species and variable environmental substrates that act as sources of bacterial diversity. Thus far, initial results from previous studies point to a pattern of decreased bacterial diversity in captive animals. However, these studies are relatively limited in the scope of species that have been examined. Here we present a dataset that includes paired wild and captive samples from mammalian taxa across six Orders to investigate generalizable patterns of the effects captivity on mammalian gut bacteria. In comparing the wild to the captive condition, our results indicate that alpha diversity of the gut bacteria remains consistent in some mammalian hosts (bovids, giraffes, anteaters, and aardvarks), declines in the captive condition in some hosts (canids, primates, and equids), and increases in the captive condition in one host taxon (rhinoceros). Differences in gut bacterial beta diversity between the captive and wild state were observed for most of the taxa surveyed, except the even-toed ungulates (bovids and giraffes). Additionally, beta diversity variation was also strongly influenced by host taxonomic group, diet type, and gut fermentation physiology. Bacterial taxa that demonstrated larger shifts in relative abundance between the captive and wild states included members of the Firmicutes and Bacteroidetes. Overall, the patterns that we observe will inform a range of disciplines from veterinary practice to captive breeding efforts for biological conservation. Furthermore, bacterial taxa that persist in the captive state provide unique insight into symbiotic relationships with the host.Recent studies increasingly note the effect of captivity or the built environment on the microbiome of humans and other animals. As symbiotic microbes are essential to many aspects of biology (e.g., digestive and immune functions), it is important to understand how lifestyle differences can impact the microbiome, and, consequently, the health of hosts. Animals living in captivity experience a range of changes that may influence the gut bacteria, such as diet changes, treatments, and reduced contact with other individuals, species and variable environmental substrates that act as sources of bacterial diversity. Thus far, initial results from previous studies point to a pattern of decreased bacterial diversity in captive animals. However, these studies are relatively limited in the scope of species that have been examined. Here we present a dataset that includes paired wild and captive samples from mammalian taxa across six Orders to investigate generalizable patterns of the effects captivity on mammalian gut bacteria. In comparing the wild to the captive condition, our results indicate that alpha diversity of the gut bacteria remains consistent in some mammalian hosts (bovids, giraffes, anteaters, and aardvarks), declines in the captive condition in some hosts (canids, primates, and equids), and increases in the captive condition in one host taxon (rhinoceros). Differences in gut bacterial beta diversity between the captive and wild state were observed for most of the taxa surveyed, except the even-toed ungulates (bovids and giraffes). Additionally, beta diversity variation was also strongly influenced by host taxonomic group, diet type, and gut fermentation physiology. Bacterial taxa that demonstrated larger shifts in relative abundance between the captive and wild states included members of the Firmicutes and Bacteroidetes. Overall, the patterns that we observe will inform a range of disciplines from veterinary practice to captive breeding efforts for biological conservation. Furthermore, bacterial taxa that persist in the captive state provide unique insight into symbiotic relationships with the host. Synopsis Recent studies increasingly note the effect of captivity or the built environment on the microbiome of humans and other animals. As symbiotic microbes are essential to many aspects of biology (e.g., digestive and immune functions), it is important to understand how lifestyle differences can impact the microbiome, and, consequently, the health of hosts. Animals living in captivity experience a range of changes that may influence the gut bacteria, such as diet changes, treatments, and reduced contact with other individuals, species and variable environmental substrates that act as sources of bacterial diversity. Thus far, initial results from previous studies point to a pattern of decreased bacterial diversity in captive animals. However, these studies are relatively limited in the scope of species that have been examined. Here we present a dataset that includes paired wild and captive samples from mammalian taxa across six Orders to investigate generalizable patterns of the effects captivity on mammalian gut bacteria. In comparing the wild to the captive condition, our results indicate that alpha diversity of the gut bacteria remains consistent in some mammalian hosts (bovids, giraffes, anteaters, and aardvarks), declines in the captive condition in some hosts (canids, primates, and equids), and increases in the captive condition in one host taxon (rhinoceros). Differences in gut bacterial beta diversity between the captive and wild state were observed for most of the taxa surveyed, except the even-toed ungulates (bovids and giraffes). Additionally, beta diversity variation was also strongly influenced by host taxonomic group, diet type, and gut fermentation physiology. Bacterial taxa that demonstrated larger shifts in relative abundance between the captive and wild states included members of the Firmicutes and Bacteroidetes. Overall, the patterns that we observe will inform a range of disciplines from veterinary practice to captive breeding efforts for biological conservation. Furthermore, bacterial taxa that persist in the captive state provide unique insight into symbiotic relationships with the host. |
| Author | McKenzie, Valerie J. Di Fiore, Anthony Link, Andres Feh, Claudia Prest, Tiffany L. Mendelson, Joseph R. Oliverio, Angela M. Kowalewski, Martin Avenant, Nico L. Knight, Rob Metcalf, Jessica L. Amato, Katherine R. Seguin-Orlando, Andaine Sanders, Jon Orlando, Ludovic Delsuc, Frédéric Korpita, Timothy M. Song, Se Jin Alexiev, Alexandra |
| AuthorAffiliation | 1 Department of Ecology and Evolutionary Biology, University of Colorado at Boulder, CO, USA 4 Department of Anthropology, Northwestern University, IL, USA 7 Department of Mammalogy, National Museum, Bloemfontein, South Africa 5 Department of Animal Sciences, Colorado State University, CO, USA 11 Centre for GeoGenetics, Natural History Museum of Denmark, University of Copenhagen, Denmark 16 Center for Microbiome Innovation, University of California at San Diego, La Jolla, CA, USA 6 National Scientific and Technical Research Council (CONICET), Estacion Biologica Corrientes, Argentina 9 Departamento de Ciencias Biologicas, Universidad de Los Andes, Bogotá, Colombia 10 Department of Anthropology, University of Texas Austin, TX, USA 8 Centre for Environmental Management, University of the Free State, Bloemfontein, South Africa 12 National High-Throughput DNA Sequencing Center, University of Copenhagen, Denmark 14 Zoo Atlanta, GA, USA 2 Department of Pediatrics and Computer Science & Engineering, Unive |
| AuthorAffiliation_xml | – name: 3 Institut des Sciences de l’Evolution, Université de Montpellier, UMR 5554, CNRS, IRD, EPHE, France – name: 12 National High-Throughput DNA Sequencing Center, University of Copenhagen, Denmark – name: 7 Department of Mammalogy, National Museum, Bloemfontein, South Africa – name: 15 School of Biological Sciences, Georgia Institute of Technology, GA, USA – name: 14 Zoo Atlanta, GA, USA – name: 8 Centre for Environmental Management, University of the Free State, Bloemfontein, South Africa – name: 2 Department of Pediatrics and Computer Science & Engineering, University of California at San Diego, CA, USA – name: 16 Center for Microbiome Innovation, University of California at San Diego, La Jolla, CA, USA – name: 1 Department of Ecology and Evolutionary Biology, University of Colorado at Boulder, CO, USA – name: 6 National Scientific and Technical Research Council (CONICET), Estacion Biologica Corrientes, Argentina – name: 11 Centre for GeoGenetics, Natural History Museum of Denmark, University of Copenhagen, Denmark – name: 10 Department of Anthropology, University of Texas Austin, TX, USA – name: 13 Association pour le cheval de Przewalski: TAKH, Station Biologique de la Tour du Valat, Arles 13200, France – name: 5 Department of Animal Sciences, Colorado State University, CO, USA – name: 4 Department of Anthropology, Northwestern University, IL, USA – name: 9 Departamento de Ciencias Biologicas, Universidad de Los Andes, Bogotá, Colombia |
| Author_xml | – sequence: 1 givenname: Valerie J. surname: McKenzie fullname: McKenzie, Valerie J. organization: Department of Ecology and Evolutionary Biology, University of Colorado at Boulder, CO, USA – sequence: 2 givenname: Se Jin surname: Song fullname: Song, Se Jin organization: Department of Pediatrics and Computer Science & Engineering, University of California at San Diego, CA, USA – sequence: 3 givenname: Frédéric surname: Delsuc fullname: Delsuc, Frédéric organization: Institut des Sciences de l’Evolution, Université de Montpellier, UMR 5554, CNRS, IRD, EPHE, France – sequence: 4 givenname: Tiffany L. surname: Prest fullname: Prest, Tiffany L. organization: Department of Ecology and Evolutionary Biology, University of Colorado at Boulder, CO, USA – sequence: 5 givenname: Angela M. surname: Oliverio fullname: Oliverio, Angela M. organization: Department of Ecology and Evolutionary Biology, University of Colorado at Boulder, CO, USA – sequence: 6 givenname: Timothy M. surname: Korpita fullname: Korpita, Timothy M. organization: Department of Ecology and Evolutionary Biology, University of Colorado at Boulder, CO, USA – sequence: 7 givenname: Alexandra surname: Alexiev fullname: Alexiev, Alexandra organization: Department of Ecology and Evolutionary Biology, University of Colorado at Boulder, CO, USA – sequence: 8 givenname: Katherine R. surname: Amato fullname: Amato, Katherine R. organization: Department of Anthropology, Northwestern University, IL, USA – sequence: 9 givenname: Jessica L. surname: Metcalf fullname: Metcalf, Jessica L. organization: Department of Animal Sciences, Colorado State University, CO, USA – sequence: 10 givenname: Martin surname: Kowalewski fullname: Kowalewski, Martin organization: National Scientific and Technical Research Council (CONICET), Estacion Biologica Corrientes, Argentina – sequence: 11 givenname: Nico L. surname: Avenant fullname: Avenant, Nico L. organization: Department of Mammalogy, National Museum, Bloemfontein, South Africa – sequence: 12 givenname: Andres surname: Link fullname: Link, Andres organization: Departamento de Ciencias Biologicas, Universidad de Los Andes, Bogotá, Colombia – sequence: 13 givenname: Anthony surname: Di Fiore fullname: Di Fiore, Anthony organization: Department of Anthropology, University of Texas Austin, TX, USA – sequence: 14 givenname: Andaine surname: Seguin-Orlando fullname: Seguin-Orlando, Andaine organization: National High-Throughput DNA Sequencing Center, University of Copenhagen, Denmark – sequence: 15 givenname: Claudia surname: Feh fullname: Feh, Claudia organization: Association pour le cheval de Przewalski: TAKH, Station Biologique de la Tour du Valat, Arles 13200, France – sequence: 16 givenname: Ludovic surname: Orlando fullname: Orlando, Ludovic organization: National Scientific and Technical Research Council (CONICET), Estacion Biologica Corrientes, Argentina – sequence: 17 givenname: Joseph R. surname: Mendelson fullname: Mendelson, Joseph R. organization: Zoo Atlanta, GA, USA – sequence: 18 givenname: Jon surname: Sanders fullname: Sanders, Jon organization: Department of Pediatrics and Computer Science & Engineering, University of California at San Diego, CA, USA – sequence: 19 givenname: Rob surname: Knight fullname: Knight, Rob organization: Department of Pediatrics and Computer Science & Engineering, University of California at San Diego, CA, USA |
| BackLink | https://www.ncbi.nlm.nih.gov/pubmed/28985326$$D View this record in MEDLINE/PubMed https://sde.hal.science/hal-01773252$$DView record in HAL |
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| Cites_doi | 10.1111/mec.12501 10.1038/nature16504 10.1128/mSystems.00046-16 10.1126/science.aab3958 10.1007/978-3-642-38954-2_131 10.1099/ijs.0.008169-0 10.1016/j.cub.2016.04.016 10.1111/1758-2229.12118 10.1038/ncomms4654 10.1038/ismej.2012.8 10.1038/ismej.2013.200 10.1038/nature12820 10.7554/eLife.05224 10.1371/journal.pone.0092193 10.1098/rspb.2016.1553 10.1073/pnas.1521835113 10.1073/pnas.1005963107 10.1016/B978-141604047-7.50058-0 10.1371/journal.pone.0170051 10.1038/nmeth.f.303 10.1126/science.1198719 10.1186/s40168-016-0181-2 10.1038/nature11053 10.1136/gutjnl-2011-301012 10.1126/science.1155725 10.1073/pnas.1218525110 10.1126/sciadv.1600946 10.1016/j.cell.2014.09.053 10.1126/science.1208344 10.1038/srep14567 10.1016/j.cell.2016.02.037 10.1258/002367784780865397 10.1890/13-1917.1 10.1128/mSystems.00191-16 |
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| References | De Filippo ( key 20180530100834_icx090-B10) 2010; 107 Sun ( key 20180530100834_icx090-B33) 2014; 74 Clauss ( key 20180530100834_icx090-B7) 2008 Muegge ( key 20180530100834_icx090-B27) 2011; 332 Amato ( key 20180530100834_icx090-B1) 2017 Ormerod ( key 20180530100834_icx090-B45) 2016; 4 Amir ( key 20180530100834_icx090-B2) 2017; 2 Sonnenburg ( key 20180530100834_icx090-B32) 2016; 529 Wilman ( key 20180530100834_icx090-B39) 2014; 95 Yatsunenko ( key 20180530100834_icx090-B41) 2012; 486 Wu ( key 20180530100834_icx090-B40) 2011; 334 Tucker ( key 20180530100834_icx090-B35) 1984; 18 Schnorr ( key 20180530100834_icx090-B30) 2014; 5 Wickham ( key 20180530100834_icx090-B38) 2009 Kubasova ( key 20180530100834_icx090-B21) 2017; 12 McFall-Ngai ( key 20180530100834_icx090-B25) 2013; 110 Evans ( key 20180530100834_icx090-B13) 2014; 9 Hird ( key 20180530100834_icx090-B17) 1984; 34 Rosenberg ( key 20180530100834_icx090-B29) 2014 Henderson ( key 20180530100834_icx090-B16) 2015; 5 Oksanen ( key 20180530100834_icx090-B28) 2016 Serino ( key 20180530100834_icx090-B31) 2012; 61 Kohl ( key 20180530100834_icx090-B20) 2014; 6 Caporaso ( key 20180530100834_icx090-B5) 2010; 7 Loudon ( key 20180530100834_icx090-B24) 2014; 8 Van Opstal ( key 20180530100834_icx090-B37) 2015; 349 Estrada ( key 20180530100834_icx090-B12) 2017; 3 Taylor ( key 20180530100834_icx090-B34) 2013; 1 Clark ( key 20180530100834_icx090-B6) 2016; 4 Clayton ( key 20180530100834_icx090-B8) 2016; 113 Tung ( key 20180530100834_icx090-B36) 2015; 4 Biagi ( key 20180530100834_icx090-B3) 2016; 26 Delsuc ( key 20180530100834_icx090-B11) 2014; 23 Fischbach ( key 20180530100834_icx090-B14) 2016; 164 Hyde ( key 20180530100834_icx090-B18) 2016; 1 Kueneman ( key 20180530100834_icx090-B22) 2016; 283 Ley ( key 20180530100834_icx090-B23) 2008; 320 Caporaso ( key 20180530100834_icx090-B4) 2012; 6 Morotomi ( key 20180530100834_icx090-B26) 2009; 59 Goodrich ( key 20180530100834_icx090-B15) 2014; 159 IUCN ( key 20180530100834_icx090-B19) 2016 David ( key 20180530100834_icx090-B9) 2014; 505 27822543 - mSystems. 2016 Aug 2;1(4) 28085934 - PLoS One. 2017 Jan 13;12 (1):e0170051 23391737 - Proc Natl Acad Sci U S A. 2013 Feb 26;110(9):3229-36 21885731 - Science. 2011 Oct 7;334(6052):105-8 24596293 - Environ Microbiol Rep. 2014 Apr;6(2):191-5 20383131 - Nat Methods. 2010 May;7(5):335-6 24736369 - Nat Commun. 2014 Apr 15;5:3654 24670791 - PLoS One. 2014 Mar 26;9(3):e92193 22110050 - Gut. 2012 Apr;61(4):543-53 25417156 - Cell. 2014 Nov 6;159(4):789-99 25774601 - Elife. 2015 Mar 16;4:null 26762459 - Nature. 2016 Jan 14;529(7585):212-5 22699611 - Nature. 2012 May 09;486(7402):222-7 28116351 - Sci Adv. 2017 Jan 18;3(1):e1600946 24336217 - Nature. 2014 Jan 23;505(7484):559-63 24118574 - Mol Ecol. 2014 Mar;23(6):1301-17 26967294 - Cell. 2016 Mar 10;164(6):1288-1300 28124727 - Microb Ecol. 2017 Jul;74(1):250-258 28289731 - mSystems. 2017 Mar 7;2(2) 6513506 - Lab Anim Sci. 1984 Oct;34(5):465-70 6439947 - Lab Anim. 1984 Oct;18(4):351-8 27573830 - Proc Natl Acad Sci U S A. 2016 Sep 13;113(37):10376-81 20679230 - Proc Natl Acad Sci U S A. 2010 Aug 17;107(33):14691-6 26449758 - Sci Rep. 2015 Oct 09;5:14567 26359393 - Science. 2015 Sep 11;349(6253):1172-3 24335825 - ISME J. 2014 Apr;8(4):830-40 22402401 - ISME J. 2012 Aug;6(8):1621-4 19567577 - Int J Syst Evol Microbiol. 2009 Aug;59(Pt 8):1895-900 21596990 - Science. 2011 May 20;332(6032):970-4 27185560 - Curr Biol. 2016 Jun 6;26(11):1480-5 27388460 - Microbiome. 2016 Jul 07;4(1):36 27655769 - Proc Biol Sci. 2016 Sep 28;283(1839) 18497261 - Science. 2008 Jun 20;320(5883):1647-51 |
| References_xml | – volume: 23 start-page: 1301 year: 2014 ident: key 20180530100834_icx090-B11 article-title: Convergence of gut microbiomes in myrmecophagous mammals publication-title: Mol Ecol doi: 10.1111/mec.12501 – volume: 529 start-page: 212 year: 2016 ident: key 20180530100834_icx090-B32 article-title: Diet-induced extinctions in the gut microbiota compound over generations publication-title: Nature doi: 10.1038/nature16504 – volume: 1 start-page: e00046 year: 2016 ident: key 20180530100834_icx090-B18 article-title: The oral and skin microbiomes of captive Komodo Dragons are significantly shared with their habitat publication-title: mSystems doi: 10.1128/mSystems.00046-16 – volume-title: vegan: Community ecology package year: 2016 ident: key 20180530100834_icx090-B28 – volume: 349 start-page: 1172 year: 2015 ident: key 20180530100834_icx090-B37 article-title: Rethinking heritability of the microbiome publication-title: Science doi: 10.1126/science.aab3958 – start-page: 825 volume-title: The prokaryotes year: 2014 ident: key 20180530100834_icx090-B29 doi: 10.1007/978-3-642-38954-2_131 – volume: 59 start-page: 1895 year: 2009 ident: key 20180530100834_icx090-B26 article-title: Paraprevotella clara gen. nov., sp. nov. and Paraprevotella xylaniphila sp. nov., members of the family “Prevotellaceae” isolated from human faeces publication-title: Int J Syst Evol Microbiol doi: 10.1099/ijs.0.008169-0 – volume: 1 start-page: 7 year: 2013 ident: key 20180530100834_icx090-B34 article-title: Feeding practices for captive greater kudus (Tragelaphus strepsiceros) in UK collections as compared to diets of free-ranging specimens publication-title: J Zoo Aqua Res – volume: 26 start-page: 1480 year: 2016 ident: key 20180530100834_icx090-B3 article-title: Gut microbiota and extreme longevity publication-title: Curr Biol doi: 10.1016/j.cub.2016.04.016 – volume: 6 start-page: 191 year: 2014 ident: key 20180530100834_icx090-B20 article-title: Wild‐caught rodents retain a majority of their natural gut microbiota upon entrance into captivity publication-title: Env Microbiol Rep doi: 10.1111/1758-2229.12118 – volume: 5 year: 2014 ident: key 20180530100834_icx090-B30 article-title: Gut microbiome of the Hadza hunter-gatherers publication-title: Nat Commun doi: 10.1038/ncomms4654 – volume: 6 start-page: 1621 year: 2012 ident: key 20180530100834_icx090-B4 article-title: Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms publication-title: ISME J doi: 10.1038/ismej.2012.8 – volume: 8 start-page: 830 year: 2014 ident: key 20180530100834_icx090-B24 article-title: Microbial community dynamics and effect of environmental microbial reservoirs on red-backed salamanders (Plethodon cinereus) publication-title: ISME J doi: 10.1038/ismej.2013.200 – volume: 505 start-page: 559 year: 2014 ident: key 20180530100834_icx090-B9 article-title: Diet rapidly and reproducibly alters the human gut microbiome publication-title: Nature doi: 10.1038/nature12820 – volume: 4 start-page: e05224. year: 2015 ident: key 20180530100834_icx090-B36 article-title: Social networks predict gut microbiome composition in wild baboons publication-title: Elife doi: 10.7554/eLife.05224 – volume: 9 start-page: e92193. year: 2014 ident: key 20180530100834_icx090-B13 article-title: Exercise prevents weight gain and alters the gut microbiota in a mouse model of high fat diet-induced obesity publication-title: PLoS One doi: 10.1371/journal.pone.0092193 – volume: 283 start-page: 20161553. year: 2016 ident: key 20180530100834_icx090-B22 article-title: Probiotic treatment restores protection against lethal fungal infection lost during amphibian captivity publication-title: Proc R Soc Lond B Biol Sci doi: 10.1098/rspb.2016.1553 – volume: 113 start-page: 10376 year: 2016 ident: key 20180530100834_icx090-B8 article-title: Captivity humanizes the primate microbiome publication-title: Proc Natl Acad Sci U S A doi: 10.1073/pnas.1521835113 – volume: 74 year: 2014 ident: key 20180530100834_icx090-B33 article-title: Decaying cyanobacteria decrease N2O emissions related to diversity of intestinal denitrifiers of Chironomus plumosus publication-title: J Limnol – volume: 107 start-page: 14691 year: 2010 ident: key 20180530100834_icx090-B10 article-title: Impact of diet in shaping gut microbiota revealed by a comparative study in children from Europe and rural Africa publication-title: Proc Natl Acad Sci U S A doi: 10.1073/pnas.1005963107 – start-page: 444 volume-title: Zoo and Wild Animal Medicine: Current Therapy year: 2008 ident: key 20180530100834_icx090-B7 doi: 10.1016/B978-141604047-7.50058-0 – volume: 12 start-page: e0170051. year: 2017 ident: key 20180530100834_icx090-B21 article-title: Housing systems influence gut microbiota composition of sows but not of their piglets publication-title: PLoS One doi: 10.1371/journal.pone.0170051 – year: 2016 ident: key 20180530100834_icx090-B19 – volume: 7 start-page: 335 year: 2010 ident: key 20180530100834_icx090-B5 article-title: QIIME allows analysis of high-throughput community sequencing data publication-title: Nat Methods doi: 10.1038/nmeth.f.303 – volume: 332 start-page: 970 year: 2011 ident: key 20180530100834_icx090-B27 article-title: Diet drives convergence in gut microbiome functions across mammalian phylogeny and within humans publication-title: Science doi: 10.1126/science.1198719 – volume: 4 start-page: 36 year: 2016 ident: key 20180530100834_icx090-B45 article-title: Genomic characterization of the uncultured Bacteroidales family S24-7 inhabiting the guts of homeothermic animals publication-title: Microbiome doi: 10.1186/s40168-016-0181-2 – start-page: 1 year: 2017 ident: key 20180530100834_icx090-B1 article-title: Patterns in gut microbiota similarity associated with degree of sociality among sex classes of a neotropical primate publication-title: Microb Ecol – volume: 486 start-page: 222 year: 2012 ident: key 20180530100834_icx090-B41 article-title: Human gut microbiome viewed across age and geography publication-title: Nature doi: 10.1038/nature11053 – volume: 61 start-page: 543 year: 2012 ident: key 20180530100834_icx090-B31 article-title: Metabolic adaptation to a high-fat diet is associated with a change in the gut microbiota publication-title: Gut doi: 10.1136/gutjnl-2011-301012 – volume: 320 start-page: 1647 year: 2008 ident: key 20180530100834_icx090-B23 article-title: Evolution of mammals and their gut microbes publication-title: Science doi: 10.1126/science.1155725 – volume: 110 start-page: 3229 year: 2013 ident: key 20180530100834_icx090-B25 article-title: Animals in a bacterial world, a new imperative for the life sciences publication-title: Proc Natl Acad Sci U S A doi: 10.1073/pnas.1218525110 – volume: 4 start-page: 183 year: 2016 ident: key 20180530100834_icx090-B6 article-title: Survey of feeding practices, body condition and faeces consistency in captive ant-eating mammals in the UK publication-title: J Zoo Aqua Res – volume: 3 start-page: e1600946 year: 2017 ident: key 20180530100834_icx090-B12 article-title: Impending extinction crisis of the world’s primates: why primates matter publication-title: Sci Adv doi: 10.1126/sciadv.1600946 – year: 2009 ident: key 20180530100834_icx090-B38 – volume: 34 start-page: 465 year: 1984 ident: key 20180530100834_icx090-B17 article-title: Diarrhea in nonhuman primates: a survey of primate colonies for incidence rates and clinical opinion publication-title: Lab Anim Sci – volume: 159 start-page: 789 year: 2014 ident: key 20180530100834_icx090-B15 article-title: Human genetics shape the gut microbiome publication-title: Cell doi: 10.1016/j.cell.2014.09.053 – volume: 334 start-page: 105 year: 2011 ident: key 20180530100834_icx090-B40 article-title: Linking long-term dietary patterns with gut microbial enterotypes publication-title: Science doi: 10.1126/science.1208344 – volume: 5 start-page: 14567. year: 2015 ident: key 20180530100834_icx090-B16 article-title: Rumen microbial community composition varies with diet and host, but a core microbiome is found across a wide geographical range publication-title: Sci Rep doi: 10.1038/srep14567 – volume: 164 start-page: 1288 year: 2016 ident: key 20180530100834_icx090-B14 article-title: Signaling in host-associated microbial communities publication-title: Cell doi: 10.1016/j.cell.2016.02.037 – volume: 18 start-page: 351 year: 1984 ident: key 20180530100834_icx090-B35 article-title: A survey of the pathology of marmosets (Callithrix jacchus) under experiment publication-title: Lab Anim doi: 10.1258/002367784780865397 – volume: 95 start-page: 2027. year: 2014 ident: key 20180530100834_icx090-B39 article-title: EltonTraits 1.0: species level foraging attributes of the world’s birds and mammals publication-title: Ecology doi: 10.1890/13-1917.1 – volume: 2 start-page: e00191 year: 2017 ident: key 20180530100834_icx090-B2 article-title: Deblur rapidly resolves single-nucleotide community sequence patterns publication-title: mSystems doi: 10.1128/mSystems.00191-16 – reference: 22699611 - Nature. 2012 May 09;486(7402):222-7 – reference: 28124727 - Microb Ecol. 2017 Jul;74(1):250-258 – reference: 26762459 - Nature. 2016 Jan 14;529(7585):212-5 – reference: 27655769 - Proc Biol Sci. 2016 Sep 28;283(1839): – reference: 24670791 - PLoS One. 2014 Mar 26;9(3):e92193 – reference: 22402401 - ISME J. 2012 Aug;6(8):1621-4 – reference: 23391737 - Proc Natl Acad Sci U S A. 2013 Feb 26;110(9):3229-36 – reference: 6439947 - Lab Anim. 1984 Oct;18(4):351-8 – reference: 26967294 - Cell. 2016 Mar 10;164(6):1288-1300 – reference: 27822543 - mSystems. 2016 Aug 2;1(4): – reference: 27185560 - Curr Biol. 2016 Jun 6;26(11):1480-5 – reference: 24596293 - Environ Microbiol Rep. 2014 Apr;6(2):191-5 – reference: 26359393 - Science. 2015 Sep 11;349(6253):1172-3 – reference: 28085934 - PLoS One. 2017 Jan 13;12 (1):e0170051 – reference: 20383131 - Nat Methods. 2010 May;7(5):335-6 – reference: 26449758 - Sci Rep. 2015 Oct 09;5:14567 – reference: 25417156 - Cell. 2014 Nov 6;159(4):789-99 – reference: 24335825 - ISME J. 2014 Apr;8(4):830-40 – reference: 27388460 - Microbiome. 2016 Jul 07;4(1):36 – reference: 22110050 - Gut. 2012 Apr;61(4):543-53 – reference: 21885731 - Science. 2011 Oct 7;334(6052):105-8 – reference: 25774601 - Elife. 2015 Mar 16;4:null – reference: 27573830 - Proc Natl Acad Sci U S A. 2016 Sep 13;113(37):10376-81 – reference: 24118574 - Mol Ecol. 2014 Mar;23(6):1301-17 – reference: 18497261 - Science. 2008 Jun 20;320(5883):1647-51 – reference: 28289731 - mSystems. 2017 Mar 7;2(2): – reference: 21596990 - Science. 2011 May 20;332(6032):970-4 – reference: 20679230 - Proc Natl Acad Sci U S A. 2010 Aug 17;107(33):14691-6 – reference: 24336217 - Nature. 2014 Jan 23;505(7484):559-63 – reference: 24736369 - Nat Commun. 2014 Apr 15;5:3654 – reference: 19567577 - Int J Syst Evol Microbiol. 2009 Aug;59(Pt 8):1895-900 – reference: 6513506 - Lab Anim Sci. 1984 Oct;34(5):465-70 – reference: 28116351 - Sci Adv. 2017 Jan 18;3(1):e1600946 |
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| Snippet | Recent studies increasingly note the effect of captivity or the built environment on the microbiome of humans and other animals. As symbiotic microbes are... Synopsis Recent studies increasingly note the effect of captivity or the built environment on the microbiome of humans and other animals. As symbiotic microbes... |
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| SubjectTerms | Animals Animals, Zoo - microbiology Bacteria - classification Bacterial Physiological Phenomena Biodiversity and Ecology Biodiversité Environmental Sciences Evolution Gastrointestinal Microbiome Interactions entre organismes Mammals - microbiology With a Little Help from My Friends: Microbial Partners in Integrative and Comparative Biology (SICB wide) |
| Title | The Effects of Captivity on the Mammalian Gut Microbiome |
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