Complete Genome Sequencing of Tick-Borne Encephalitis Virus Directly from Clinical Samples: Comparison of Shotgun Metagenomic and Targeted Amplicon-Based Sequencing - Zakotnik, Samo; Knap, Nataša; Bogovič, Petra; Zorec, Tomaž Mark; Poljak, Mario; Strle, Franc; Avšič-Županc, Tatjana; Korva, Miša (Viruses, 2022)
Keywords: amplicons; Analysis; Arachnids; Base Sequence; clinical samples; Design; Diagnosis; Disease; DNA primers; DNA sequencing; Encephalitis; Encephalitis Viruses, Tick-Borne - genetics; Encephalitis, Tick-Borne - diagnosis; Ethics; Fatalities; Genes, Viral; Genetic aspects; genome; Genomes; Humans; Illnesses; Infections; Laboratory animals; Meningitis; Meningoencephalitis; Metagenomics; Mutation; Nervous system; next-generation sequencing (NGS); Nucleotide sequencing; Oligonucleotides; pathogenesis; patients; Risk factors; Severe acute respiratory syndrome coronavirus 2; Tick-borne encephalitis; Tick-borne encephalitis virus; Viral genetics; Viral infections; Viruses; West Nile virus; Whole Genome Sequencing; Slovenia; Asia; Europe; whole genome sequencing; amplicons; metagenomics; next-generation sequencing (NGS); clinical samples; tick-borne encephalitis virus