CellNeighborEX : deciphering neighbor‐dependent gene expression from spatial transcriptomics data - Kim, Hyobin; Kumar, Amit; Lövkvist, Cecilia; Palma, António M; Martin, Patrick; Kim, Junil; Bhoopathi, Praveen; Trevino, Jose; Fisher, Paul; Madan, Esha; Gogna, Rajan; Won, Kyoung Jae (Molecular systems biology, 2023)
Keywords: Animals; Biological activity; Brain; Cell Communication; Cell interactions; Cells; cellular communication; cell–cell interactions; Communication; Embryos; Gap junctions; Gene expression; Gene Expression Profiling; Genes; Ligands; Liver cancer; Liver Neoplasms; Metastases; Method; Methods; Mice; Microenvironments; neighbor‐dependent genes; Receptors; Spatial data; spatial transcriptomics; Transcriptome - genetics; Transcriptomes; Transcriptomics; Tumor Microenvironment; neighbor-dependent genes; cellular communication; spatial transcriptomics; cell-cell interactions