ChEAP: ChIP-exo analysis pipeline and the investigation of Escherichia coli RpoN protein-DNA interactions - Bang, Ina; Khanh Nong, Linh; Young Park, Joon; Thi Le, Hoa; Mok Lee, Sang; Kim, Donghyuk (Computational and structural biotechnology journal, 2023)
Keywords: Analysis pipeline; bioinformatics; biotechnology; ChIP-exo; chromatin immunoprecipitation; computer software; data collection; Escherichia coli; Escherichia coli K12; Internet; Python; RpoN; Sigma factor; sigma factors; Sigmulon; TRN; TF; Colab; SNR; Escherichia coli; Sigma factor; RpoN; Sigmulon; ChIP; Analysis pipeline; ChIP-exo; ChEAP; TF, Transcription Factors; ChEAP, ChIP-exo Analysis Pipeline; ChIP, Chromatin Immunoprecipitation; Colab, Google Colaboratory; TRN, Transcriptional Regulatory Network; SNR, Signal-to-Noise Ratio