Identifying mRNAs Bound by Human RBMY Protein in the Testis

Rbmy gene encodes a germ-cell specific nuclear RNA-binding protein and is involved in spermatogenesis. To further investigate the specific events of spermatogenesis in which Rbmy plays a role, the target mRNAs of human RBMY protein were isolated and identified. Through the isolating specific nucleic...

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Published inJournal of Reproduction and Development Vol. 57; no. 1; pp. 107 - 112
Main Authors ZHANG, Sizhong, LIANG, Suhua, LIU, Yanyan, ZHAO, Shaozhi, MA, Yongxin, SUN, Huaqin, ZENG, Mei
Format Journal Article
LanguageEnglish
Published Japan THE SOCIETY FOR REPRODUCTION AND DEVELOPMENT 01.02.2011
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ISSN0916-8818
1348-4400
DOI10.1262/jrd.10-092N

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Abstract Rbmy gene encodes a germ-cell specific nuclear RNA-binding protein and is involved in spermatogenesis. To further investigate the specific events of spermatogenesis in which Rbmy plays a role, the target mRNAs of human RBMY protein were isolated and identified. Through the isolating specific nucleic acids associated with proteins (SNAAP) technique, we isolated twenty potential target genes of human RBMY protein from the human testis in the present study. Some of these target genes play important roles during spermatogenesis and have alternative transcripts in the testis. In this study, we focused on the human- related (never in mitosis gene a) kinase 10 (Nek10) gene, which belongs to the Nek protein kinase subfamily. Nek10 has two transcripts, and the results of RT-PCR and Electrophoretic Mobility Shift Assays (EMSA) show that hRBMY protein can only bind to transcript variant 2 of Nek10 and that hRbmy may take part in alternative splicing of Nek10. Isolation and identification of target genes of hRBMY will be helpful to further investigate the biological function of RBMY in spermatogenesis.
AbstractList Rbmy gene encodes a germ-cell specific nuclear RNA-binding protein and is involved in spermatogenesis. To further investigate the specific events of spermatogenesis in which Rbmy plays a role, the target mRNAs of human RBMY protein were isolated and identified. Through the isolating specific nucleic acids associated with proteins (SNAAP) technique, we isolated twenty potential target genes of human RBMY protein from the human testis in the present study. Some of these target genes play important roles during spermatogenesis and have alternative transcripts in the testis. In this study, we focused on the human- related (never in mitosis gene a) kinase 10 (Nek10) gene, which belongs to the Nek protein kinase subfamily. Nek10 has two transcripts, and the results of RT-PCR and Electrophoretic Mobility Shift Assays (EMSA) show that hRBMY protein can only bind to transcript variant 2 of Nek10 and that hRbmy may take part in alternative splicing of Nek10. Isolation and identification of target genes of hRBMY will be helpful to further investigate the biological function of RBMY in spermatogenesis.
Author ZENG, Mei
LIU, Yanyan
ZHANG, Sizhong
SUN, Huaqin
ZHAO, Shaozhi
LIANG, Suhua
MA, Yongxin
Author_xml – sequence: 1
  fullname: ZHANG, Sizhong
  organization: Department of Medical Genetics, State Key Laboratory of Biotherapy, West China Hospital, Sichuan University
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  fullname: LIANG, Suhua
  organization: Biology Group of North Sichuan Medical College
– sequence: 1
  fullname: LIU, Yanyan
  organization: Department of Medical Genetics, State Key Laboratory of Biotherapy, West China Hospital, Sichuan University
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  fullname: ZHAO, Shaozhi
  organization: Department of Medical Genetics, State Key Laboratory of Biotherapy, West China Hospital, Sichuan University
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  fullname: MA, Yongxin
  organization: Department of Medical Genetics, State Key Laboratory of Biotherapy, West China Hospital, Sichuan University
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  fullname: SUN, Huaqin
  organization: Department of Medical Genetics, State Key Laboratory of Biotherapy, West China Hospital, Sichuan University
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  fullname: ZENG, Mei
  organization: Biology Group of North Sichuan Medical College
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16. Bourgeois CF, Lejeune F, Stévenin J. Broad specificity of SR (serine/arginine) proteins in the regulation of alternative splicing of premessenger RNA. Prog Nucleic Acid Res Mol Bio 2004; 78: 37-88.
2. Hecht NB. The making of a spermatozoon: a molecular perspective. Dev Genet 1995; 16: 95-103.
7. Chai NN, Zhou HY, Hernandez J, Najmabadi H, Bhasin S, Yen PH. Structure and organization of the RBMY genes on the human Y chromosome: transposition and amplification of an ancestral autosomal hnRNPG gene. Genomics 1998; 49: 283-289.
1. Willison K, Ashworth A. Mammalian spermatogenic gene expression. Trends Genet 1987; 3: 351-355.
5. Tiepolo L, Zuffardi O. Localisation of factors controlling spermatogenesis in the non-fluorecent portion of the human Y chromosome long arm. Hum Genet 1976; 34: 119-124.
4. Eddy EM, O'Brien DA. Gene expression during mammalian meiosis. Curr Top Dev Biol 1998; 37: 141-200.
13. Mahadevaiah SK, Odorisio T, Elliott DJ, Rattigan A, Szot M, Laval SH. Mouse homologues of the human AZF candidate gene RBM are expressed in spermatogonia and spermatids, and map to a Y chromosome deletion interval associated with a high incidence of sperm abnormalities. Hum Mol Genet 1998; 7: 715-727.
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15. Elliott DJ. The role of potential splicing factors including RBMY, RBMX, hnRNPG-T and STAR proteins in spermatogenesis. Int J Androl 2004; 27: 328-334.
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28. Maniatis T, Tasic B. Alternative pre-mRNA splicing and proteome expansion in metazoan. Nature 2002; 418: 236-243.
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32. Kan Z, Garrett-Engele PW, Johnson JM, Castle JC. Evolutionarily conserved and diverged alternative splicing events show different expression and functional profiles. Nucleic Acids Res 2005; 33: 5659-5666.
37. Skrisovska L, Bourgeois CF, Stefl R, Grellscheid SN, Kister L, Wenter P. The testis-specific human protein RBMY recognizes RNA through a novel mode of interaction. EMBO Reports 2007; 8: 372-379.
9. Delbridge ML, Disteche CM, Graves JAM, Lingenfelte PA. The candidate spermatogenesis gene RBMY has a homologue on the human X chromosome. Nat Genet 1999; 22: 223-224.
8. Skaletsky H, Kuroda-Kawaguchi T, Minx PJ, Cordum HS, Hillier L, Brown LG. The male-specific region of the human Y chromosome is a mosaic of discrete sequence classes. Nature 2003; 423: 825-837.
12. Delbridge ML, Harry JL, Toder R, Ma K, Chandley AC, Graves JAM. A human candidate spermatogenesis gene, RBM1, is conserved and amplified on the marsupial Y chromosome. Nat Genet 1997; 15: 131-136.
6. Ma K, Sharkey A, Bichmore WA, Hill RE, Prosser EJ, Speed RM. A Y chromosome gene family with RNA-binding protein homology: candidates for the azoospermia factor AZF controlling human spermatogenesis. Cell 1993; 75: 1287-1295.
31. Boue S, Letunic I, Bork P. Alternative splicing and evolution. Bioessays 2003; 25: 1031-1034.
20. Jiao X, Triffilis P, Kiledjian M. Identification of target messenger RNA substrates for the murine deleted in azoospermia-like RNA-binding protein. Biol Reprod 2002; 66: 475-485.
18. Trifillis P, Kiledjian M, Day N. Finding the right RNA: identification of cellular mRNA substrates for RNA-binding proteins. RNA 1999; 5: 1071-1082.
11. Elliott DJ, Ma K, Kerr SM, Thakrar R, Speed R, Chandley AC. An RBM homologue maps to the mouse Y chromosome and is expressed in germ cell. Hum Mol Genet 1996; 5: 869-874.
25. Maruyama O, Nishimor H, Kataqiri T, Miki Y, Ueno A, Nakamura Y. Cloning of TCFL5 encoding a novel human basic helix-loop-helix motif protein that is specifically expressed in primary spermatocytes at the pachytene stage. Cytogenet Cell Genet 1998; 82: 41-45.
22. Mei Z, Sun HQ, Chen S, Xinyang W, Yuan Y, Yunqiang L. Identification of target messenger RNA substrates for mouse RBMY. Mol Hum Reprod 2008; 14: 331-336.
14. Jungmin L, Jinpyo H, Euisu K, Kyungjin K, Soo WK. Developmental stage-specific expression of RBM suggests its involvement in early phase of spematogenesis. Mol Hum Reprod 2004; 10: 259-264.
27. Greenbaum MP, Yan W, Wu MH. TEX14 is essential for intercellular bridges and fertility in male mice. Proc Nat Acad Sci USA 2006; 103: 4982-4987.
35. Hecht NB. Molecular mechanisms of male germ cell differentiation. BioEssays 1998; 20: 555-561.
3. Sassone-Corsi P. Transcriptional checkpoints determining the fate of male germ cell. Cell 1997; 88: 163-166.
26. Siep M, Sleddens-Linkels E, Mulders S, Van EH, Wassenaar E, Van CWA. Basic helix-loop-helix transcription factor Tcfl5 interacts with the Calmegin gene promoter in mouse spermatogenesis. Nucleic Acids Res 2004; 32: 6425-6436.
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34. Natacha D, Cyril FB, Fabrice L, Yilei L, Ingrid EE, David JE, James S. Human RBMY regulates germline-specific splicing events by modulating the function of the serine/arginine-rich proteins 9G8 and Tra2-β. J Cell Sci 2010; 123: 40-50.
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References_xml – reference: 22. Mei Z, Sun HQ, Chen S, Xinyang W, Yuan Y, Yunqiang L. Identification of target messenger RNA substrates for mouse RBMY. Mol Hum Reprod 2008; 14: 331-336.
– reference: 9. Delbridge ML, Disteche CM, Graves JAM, Lingenfelte PA. The candidate spermatogenesis gene RBMY has a homologue on the human X chromosome. Nat Genet 1999; 22: 223-224.
– reference: 37. Skrisovska L, Bourgeois CF, Stefl R, Grellscheid SN, Kister L, Wenter P. The testis-specific human protein RBMY recognizes RNA through a novel mode of interaction. EMBO Reports 2007; 8: 372-379.
– reference: 29. Black DL. Mechanism of alternative pre-messenger RNA splicing. Annu Rev Biochem 2003; 72: 291-336.
– reference: 24. Adelman CA, Petrini JHJ. ZIP4H (TEX11) Deficiency in the mouse impairs meiotic double strand break repair and the regulation of crossing over. Plos Genet 2008; 4: e1000042.
– reference: 4. Eddy EM, O'Brien DA. Gene expression during mammalian meiosis. Curr Top Dev Biol 1998; 37: 141-200.
– reference: 11. Elliott DJ, Ma K, Kerr SM, Thakrar R, Speed R, Chandley AC. An RBM homologue maps to the mouse Y chromosome and is expressed in germ cell. Hum Mol Genet 1996; 5: 869-874.
– reference: 21. King PH. RNA-binding analyses of Huc and HuD with the VEGF and c-myc 3-untranslated regions using a novel ELISA-based assay. Nucleic Acids Res 2000; 28: E20.
– reference: 23. Yang F, Eckardt S, Leu NA, McLaughlin KJ, Wang PJ. Mouse TEX15 is essential for DNA double-strand break repair and chromosomal synapsis during male meiosis. J Cell Biol 2008; 180: 673-679.
– reference: 10. Ehrmann I, Dalgliesh C, Tsaousi A, Paronetto MP, Heinrich B, Kist R. Haploinsufficiency of the germ cell-specific nuclear RNA binding protein hnRNP G-T prevents functional spermatogenesis in the mouse. Hum Mol Genet 2008; 17: 2803-2818.
– reference: 7. Chai NN, Zhou HY, Hernandez J, Najmabadi H, Bhasin S, Yen PH. Structure and organization of the RBMY genes on the human Y chromosome: transposition and amplification of an ancestral autosomal hnRNPG gene. Genomics 1998; 49: 283-289.
– reference: 34. Natacha D, Cyril FB, Fabrice L, Yilei L, Ingrid EE, David JE, James S. Human RBMY regulates germline-specific splicing events by modulating the function of the serine/arginine-rich proteins 9G8 and Tra2-β. J Cell Sci 2010; 123: 40-50.
– reference: 12. Delbridge ML, Harry JL, Toder R, Ma K, Chandley AC, Graves JAM. A human candidate spermatogenesis gene, RBM1, is conserved and amplified on the marsupial Y chromosome. Nat Genet 1997; 15: 131-136.
– reference: 26. Siep M, Sleddens-Linkels E, Mulders S, Van EH, Wassenaar E, Van CWA. Basic helix-loop-helix transcription factor Tcfl5 interacts with the Calmegin gene promoter in mouse spermatogenesis. Nucleic Acids Res 2004; 32: 6425-6436.
– reference: 13. Mahadevaiah SK, Odorisio T, Elliott DJ, Rattigan A, Szot M, Laval SH. Mouse homologues of the human AZF candidate gene RBM are expressed in spermatogonia and spermatids, and map to a Y chromosome deletion interval associated with a high incidence of sperm abnormalities. Hum Mol Genet 1998; 7: 715-727.
– reference: 33. Joan R, Aaron G, Jennifer C, Joseph A. Active Nerc2 protein kinase concentrates at centrosomes early in mitosis and is necessary for proper spindle assembly. Mol Bio Cell 2005; 16: 4827-4840.
– reference: 36. Grizzi F, Chiriva IM, Franceschini B, Hemonat PL, Soda G, Lim SH. Immunolocalization of sperm protein 17 in human testis and ejaculated spermatozoa. J Histochem Cytochem 2003; 51: 1245-1248.
– reference: 28. Maniatis T, Tasic B. Alternative pre-mRNA splicing and proteome expansion in metazoan. Nature 2002; 418: 236-243.
– reference: 17. Elliott DJ, Bourgeois CF, Klink A, Stevenin J, Cooke HJA. Mammalian germ cell-specific RNA-binding protein interacts with ubiquitously expressed proteins involved in splice site selection. Proc Nat Acad Sci USA 2000; 97: 5717-5722.
– reference: 35. Hecht NB. Molecular mechanisms of male germ cell differentiation. BioEssays 1998; 20: 555-561.
– reference: 6. Ma K, Sharkey A, Bichmore WA, Hill RE, Prosser EJ, Speed RM. A Y chromosome gene family with RNA-binding protein homology: candidates for the azoospermia factor AZF controlling human spermatogenesis. Cell 1993; 75: 1287-1295.
– reference: 16. Bourgeois CF, Lejeune F, Stévenin J. Broad specificity of SR (serine/arginine) proteins in the regulation of alternative splicing of premessenger RNA. Prog Nucleic Acid Res Mol Bio 2004; 78: 37-88.
– reference: 25. Maruyama O, Nishimor H, Kataqiri T, Miki Y, Ueno A, Nakamura Y. Cloning of TCFL5 encoding a novel human basic helix-loop-helix motif protein that is specifically expressed in primary spermatocytes at the pachytene stage. Cytogenet Cell Genet 1998; 82: 41-45.
– reference: 20. Jiao X, Triffilis P, Kiledjian M. Identification of target messenger RNA substrates for the murine deleted in azoospermia-like RNA-binding protein. Biol Reprod 2002; 66: 475-485.
– reference: 2. Hecht NB. The making of a spermatozoon: a molecular perspective. Dev Genet 1995; 16: 95-103.
– reference: 8. Skaletsky H, Kuroda-Kawaguchi T, Minx PJ, Cordum HS, Hillier L, Brown LG. The male-specific region of the human Y chromosome is a mosaic of discrete sequence classes. Nature 2003; 423: 825-837.
– reference: 19. Paronetto MP, Achsel T, Massiello A, Chalfant CE, Sette C. The RNA-binding protein Sam68 modulates the alternative splicing of Bcl-x. J Cell Biol 2007; 7: 929-939.
– reference: 1. Willison K, Ashworth A. Mammalian spermatogenic gene expression. Trends Genet 1987; 3: 351-355.
– reference: 15. Elliott DJ. The role of potential splicing factors including RBMY, RBMX, hnRNPG-T and STAR proteins in spermatogenesis. Int J Androl 2004; 27: 328-334.
– reference: 14. Jungmin L, Jinpyo H, Euisu K, Kyungjin K, Soo WK. Developmental stage-specific expression of RBM suggests its involvement in early phase of spematogenesis. Mol Hum Reprod 2004; 10: 259-264.
– reference: 30. Stetefeld J, Ruegg MA. Structural and functional diversity generated by alternative mRNA splicing. Trends Biochem Sci 2005; 30: 515-521.
– reference: 31. Boue S, Letunic I, Bork P. Alternative splicing and evolution. Bioessays 2003; 25: 1031-1034.
– reference: 18. Trifillis P, Kiledjian M, Day N. Finding the right RNA: identification of cellular mRNA substrates for RNA-binding proteins. RNA 1999; 5: 1071-1082.
– reference: 5. Tiepolo L, Zuffardi O. Localisation of factors controlling spermatogenesis in the non-fluorecent portion of the human Y chromosome long arm. Hum Genet 1976; 34: 119-124.
– reference: 3. Sassone-Corsi P. Transcriptional checkpoints determining the fate of male germ cell. Cell 1997; 88: 163-166.
– reference: 27. Greenbaum MP, Yan W, Wu MH. TEX14 is essential for intercellular bridges and fertility in male mice. Proc Nat Acad Sci USA 2006; 103: 4982-4987.
– reference: 32. Kan Z, Garrett-Engele PW, Johnson JM, Castle JC. Evolutionarily conserved and diverged alternative splicing events show different expression and functional profiles. Nucleic Acids Res 2005; 33: 5659-5666.
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Snippet Rbmy gene encodes a germ-cell specific nuclear RNA-binding protein and is involved in spermatogenesis. To further investigate the specific events of...
SourceID pubmed
crossref
jstage
SourceType Index Database
Enrichment Source
Publisher
StartPage 107
SubjectTerms Alternative Splicing
Electrophoretic Mobility Shift Assay
Gene Expression Profiling
Humans
Male
Nek10
NIMA-Related Kinases
Nuclear Proteins - metabolism
Protein Binding
Protein-Serine-Threonine Kinases - genetics
Protein-Serine-Threonine Kinases - metabolism
Rbmy gene
Recombinant Fusion Proteins - metabolism
Reverse Transcriptase Polymerase Chain Reaction
RNA, Messenger - isolation & purification
RNA, Messenger - metabolism
RNA-binding protein
RNA-Binding Proteins - metabolism
SNAAP technique
Spermatogenesis
Testis - metabolism
Title Identifying mRNAs Bound by Human RBMY Protein in the Testis
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https://www.ncbi.nlm.nih.gov/pubmed/21422736
Volume 57
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