Avoiding the pitfalls of gene set enrichment analysis with SetRank - Simillion, Cedric; Liechti, Robin; Lischer, Heidi E.L.; Ioannidis, Vassilios; Bruggmann, Rémy (BMC bioinformatics, 2017)
Keywords: Algorithms; Annotations; Benchmarks; Bias; Binding sites; Bioinformatics; Biomedical and Life Sciences; Brain - metabolism; Computational Biology - methods; Computational Biology/Bioinformatics; Computer Appl. in Life Sciences; Databases, Genetic; Gene expression; Gene Expression Profiling; Gene set enrichment analysis; Genome, Human; Genomics; Humans; Life Sciences; Lists; Methodology; Methodology Article; Methods; Microarrays; Models, Theoretical; Neoplasms - genetics; Ontology; Proteins; Reproducibility of Results; Sensitivity and Specificity; Transcriptome analysis; Pathway analysis; Web interface; Sample source bias; GSEA; Gene set enrichment analysis; Algorithm; Functional genomics; R package