Taxonomic reorganization of family Partitiviridae and other recent progress in partitivirus research
•Family Partitiviridae has undergone a taxonomic reorganization.•Four new genera of fungal or plant partitiviruses have been added to the family.•The three former genera of fungal or plant partitiviruses have been eliminated.•Other recent progress of note in partitivirus research is summarized.•Part...
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| Published in | Virus research Vol. 188; pp. 128 - 141 |
|---|---|
| Main Authors | , , , , , , |
| Format | Journal Article |
| Language | English |
| Published |
Netherlands
Elsevier B.V
08.08.2014
|
| Subjects | |
| Online Access | Get full text |
| ISSN | 0168-1702 1872-7492 1872-7492 |
| DOI | 10.1016/j.virusres.2014.04.007 |
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| Abstract | •Family Partitiviridae has undergone a taxonomic reorganization.•Four new genera of fungal or plant partitiviruses have been added to the family.•The three former genera of fungal or plant partitiviruses have been eliminated.•Other recent progress of note in partitivirus research is summarized.•Partitivirus effects on their hosts appear not to be cryptic in many cases.
Phylogenetic analyses have prompted a taxonomic reorganization of family Partitiviridae (encapsidated, bisegmented dsRNA viruses that infect plants, fungi, or protozoa), the focus of this review. After a brief introduction to partitiviruses, the taxonomic changes are discussed, including replacement of former genera Partitivirus, Alphacryptovirus, and Betacryptovirus, with new genera Alphapartitivirus, Betapartitivirus, Gammapartitivirus, and Deltapartitivirus, as well as redistribution of species among these new genera. To round out the review, other recent progress of note in partitivirus research is summarized, including discoveries of novel partitivirus sequences by metagenomic approaches and mining of sequence databases, determinations of fungal partitivirus particle structures, demonstrations of fungal partitivirus transmission to new fungal host species, evidence for other aspects of partitivirus–host interactions and host effects, and identification of other fungal or plant viruses with some similarities to partitiviruses. Some outstanding questions are also discussed. |
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| AbstractList | Phylogenetic analyses have prompted a taxonomic reorganization of family Partitiviridae (encapsidated, bisegmented dsRNA viruses that infect plants, fungi, or protozoa), the focus of this review. After a brief introduction to partitiviruses, the taxonomic changes are discussed, including replacement of former genera Partitivirus, Alphacryptovirus, and Betacryptovirus, with new genera Alphapartitivirus, Betapartitivirus, Gammapartitivirus, and Deltapartitivirus, as well as redistribution of species among these new genera. To round out the review, other recent progress of note in partitivirus research is summarized, including discoveries of novel partitivirus sequences by metagenomic approaches and mining of sequence databases, determinations of fungal partitivirus particle structures, demonstrations of fungal partitivirus transmission to new fungal host species, evidence for other aspects of partitivirus-host interactions and host effects, and identification of other fungal or plant viruses with some similarities to partitiviruses. Some outstanding questions are also discussed. Phylogenetic analyses have prompted a taxonomic reorganization of family Partitiviridae (encapsidated, bisegmented dsRNA viruses that infect plants, fungi, or protozoa), the focus of this review. After a brief introduction to partitiviruses, the taxonomic changes are discussed, including replacement of former genera Partitivirus, Alphacryptovirus, and Betacryptovirus, with new genera Alphapartitivirus, Betapartitivirus, Gammapartitivirus, and Deltapartitivirus, as well as redistribution of species among these new genera. To round out the review, other recent progress of note in partitivirus research is summarized, including discoveries of novel partitivirus sequences by metagenomic approaches and mining of sequence databases, determinations of fungal partitivirus particle structures, demonstrations of fungal partitivirus transmission to new fungal host species, evidence for other aspects of partitivirus-host interactions and host effects, and identification of other fungal or plant viruses with some similarities to partitiviruses. Some outstanding questions are also discussed.Phylogenetic analyses have prompted a taxonomic reorganization of family Partitiviridae (encapsidated, bisegmented dsRNA viruses that infect plants, fungi, or protozoa), the focus of this review. After a brief introduction to partitiviruses, the taxonomic changes are discussed, including replacement of former genera Partitivirus, Alphacryptovirus, and Betacryptovirus, with new genera Alphapartitivirus, Betapartitivirus, Gammapartitivirus, and Deltapartitivirus, as well as redistribution of species among these new genera. To round out the review, other recent progress of note in partitivirus research is summarized, including discoveries of novel partitivirus sequences by metagenomic approaches and mining of sequence databases, determinations of fungal partitivirus particle structures, demonstrations of fungal partitivirus transmission to new fungal host species, evidence for other aspects of partitivirus-host interactions and host effects, and identification of other fungal or plant viruses with some similarities to partitiviruses. Some outstanding questions are also discussed. •Family Partitiviridae has undergone a taxonomic reorganization.•Four new genera of fungal or plant partitiviruses have been added to the family.•The three former genera of fungal or plant partitiviruses have been eliminated.•Other recent progress of note in partitivirus research is summarized.•Partitivirus effects on their hosts appear not to be cryptic in many cases. Phylogenetic analyses have prompted a taxonomic reorganization of family Partitiviridae (encapsidated, bisegmented dsRNA viruses that infect plants, fungi, or protozoa), the focus of this review. After a brief introduction to partitiviruses, the taxonomic changes are discussed, including replacement of former genera Partitivirus, Alphacryptovirus, and Betacryptovirus, with new genera Alphapartitivirus, Betapartitivirus, Gammapartitivirus, and Deltapartitivirus, as well as redistribution of species among these new genera. To round out the review, other recent progress of note in partitivirus research is summarized, including discoveries of novel partitivirus sequences by metagenomic approaches and mining of sequence databases, determinations of fungal partitivirus particle structures, demonstrations of fungal partitivirus transmission to new fungal host species, evidence for other aspects of partitivirus–host interactions and host effects, and identification of other fungal or plant viruses with some similarities to partitiviruses. Some outstanding questions are also discussed. |
| Author | Nibert, Max L. Maiss, Edgar Ghabrial, Said A. Lesker, Till Suzuki, Nobuhiro Vainio, Eeva J. Jiang, Daohong |
| Author_xml | – sequence: 1 givenname: Max L. surname: Nibert fullname: Nibert, Max L. email: mnibert@hms.harvard.edu organization: Department of Microbiology & Immunobiology, Harvard Medical School, Boston, MA 02115, USA – sequence: 2 givenname: Said A. surname: Ghabrial fullname: Ghabrial, Said A. organization: Department of Plant Pathology, University of Kentucky, Lexington, KY 40546, USA – sequence: 3 givenname: Edgar surname: Maiss fullname: Maiss, Edgar organization: Department of Phytomedicine, Institute of Horticultural Production Systems, Leibniz Universität Hannover, Hannover D-30419, Germany – sequence: 4 givenname: Till surname: Lesker fullname: Lesker, Till organization: Department of Phytomedicine, Institute of Horticultural Production Systems, Leibniz Universität Hannover, Hannover D-30419, Germany – sequence: 5 givenname: Eeva J. surname: Vainio fullname: Vainio, Eeva J. organization: Finnish Forest Research Institute, Vantaa Research Unit, Vantaa, Finland – sequence: 6 givenname: Daohong surname: Jiang fullname: Jiang, Daohong organization: State Key Lab of Agricultural Microbiology, Huazhong Agricultural University, Wuhan, Hubei Province, PR China – sequence: 7 givenname: Nobuhiro surname: Suzuki fullname: Suzuki, Nobuhiro organization: Institute of Plant Science & Resources, Okayama University, Kurashiki, Japan |
| BackLink | https://www.ncbi.nlm.nih.gov/pubmed/24768846$$D View this record in MEDLINE/PubMed |
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| Copyright | 2014 Elsevier B.V. Copyright © 2014 Elsevier B.V. All rights reserved. |
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| Keywords | Partitiviridae Protozoal virus Virus taxonomy Cryptovirus dsRNA virus Plant virus Fungal virus Partitivirus |
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| Snippet | •Family Partitiviridae has undergone a taxonomic reorganization.•Four new genera of fungal or plant partitiviruses have been added to the family.•The three... Phylogenetic analyses have prompted a taxonomic reorganization of family Partitiviridae (encapsidated, bisegmented dsRNA viruses that infect plants, fungi, or... |
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| SubjectTerms | Amoebida - virology Betapartitivirus Cluster Analysis Cryptovirus double-stranded RNA dsRNA virus Fungal virus fungi Fungi - virology Gammapartitivirus hosts metagenomics new genus Partitiviridae Partitivirus Phylogeny Plant virus plant viruses plants (botany) Plants - virology Protozoa Protozoal virus RNA Viruses - classification RNA Viruses - genetics RNA Viruses - isolation & purification Sequence Homology Virology - trends Virus taxonomy |
| Title | Taxonomic reorganization of family Partitiviridae and other recent progress in partitivirus research |
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