ConKit: a python interface to contact predictions

Recent advances in protein residue contact prediction algorithms have led to the emergence of many new methods and a variety of file formats. We present ConKit , an open source, modular and extensible Python interface which allows facile conversion between formats and provides an interface to analys...

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Bibliographic Details
Published inBioinformatics (Oxford, England) Vol. 33; no. 14; pp. 2209 - 2211
Main Authors Simkovic, Felix, Thomas, Jens M H, Rigden, Daniel J
Format Journal Article
LanguageEnglish
Published England Oxford University Press 15.07.2017
Subjects
Algorithms
Amino Acid Sequence
Applications Notes
Proteins - chemistry
Sequence Alignment
Software
User-Computer Interface
Online AccessGet full text
ISSN1367-4803
1367-4811
1367-4811
DOI10.1093/bioinformatics/btx148

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Summary:Recent advances in protein residue contact prediction algorithms have led to the emergence of many new methods and a variety of file formats. We present ConKit , an open source, modular and extensible Python interface which allows facile conversion between formats and provides an interface to analyses of sequence alignments and sets of contact predictions. ConKit is available via the Python Package Index. The documentation can be found at http://www.conkit.org . ConKit is licensed under the BSD 3-Clause. hlfsimko@liverpool.ac.uk or drigden@liverpool.ac.uk. Supplementary data are available at Bioinformatics online.
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ISSN:1367-4803
1367-4811
1367-4811
DOI:10.1093/bioinformatics/btx148