Artificial intelligence and algorithmic computational pathology: an introduction with renal allograft examples

• Published in: Histopathology Vol. 78; no. 6; pp. 791 - 804
• Main Authors: Farris, Alton B, Vizcarra, Juan, Amgad, Mohamed, Cooper, Lee A D, Gutman, David, Hogan, Julien
• Format: Journal Article
• Language: English
• Published: England Wiley Subscription Services, Inc 01.05.2021
• Subjects: Algorithms; Allografts - pathology; Artificial Intelligence; Atrophy; Classification; Computer applications; Deep learning; digital pathology; Fibrosis; Humans; Hypotheses; image analysis; Image processing; Image Processing, Computer-Assisted; Inflammation; Kidney - pathology; Kidney Diseases - pathology; Kidney Diseases - surgery; Kidney Transplantation; Learning algorithms; Machine Learning; Neural networks; Pathology; renal transplant pathology; Segmentation; machine learning; digital pathology; image analysis; renal transplant pathology; artificial intelligence
• ISSN: 0309-0167; 1365-2559; 1365-2559
• DOI: 10.1111/his.14304

Whole slide imaging, which is an important technique in the field of digital pathology, has recently been the subject of increased interest and avenues for utilisation, and with more widespread whole slide image (WSI) utilisation, there will also be increased interest in and implementation of image analysis (IA) techniques. IA includes artificial intelligence (AI) and targeted or hypothesis‐driven algorithms. In the overall pathology field, the number of citations related to these topics has increased in recent years. Renal pathology is one anatomical pathology subspecialty that has utilised WSIs and IA algorithms; it can be argued that renal transplant pathology could be particularly suited for whole slide imaging and IA, as renal transplant pathology is frequently classified by use of the semiquantitative Banff classification of renal allograft pathology. Hypothesis‐driven/targeted algorithms have been used in the past for the assessment of a variety of features in the kidney (e.g. interstitial fibrosis, tubular atrophy, inflammation); in recent years, the amount of research has particularly increased in the area of AI/machine learning for the identification of glomeruli, for histological segmentation, and for other applications. Deep learning is the form of machine learning that is most often used for such AI approaches to the ‘big data’ of pathology WSIs, and deep learning methods such as artificial neural networks (ANNs)/convolutional neural networks (CNNs) are utilised. Unsupervised and supervised AI algorithms can be employed to accomplish image or semantic classification. In this review, AI and other IA algorithms applied to WSIs are discussed, and examples from renal pathology are covered, with an emphasis on renal transplant pathology.