Global Integrated Genomic and Transcriptomic Analyses of MYB Transcription Factor Superfamily in C3 Model Plant Oryza sativa (L.) Unravel Potential Candidates Involved in Abiotic Stress Signaling
Plant transcription factors (TFs) are significant players in transcriptional regulations, signal transduction, and constitute an integral part of signaling networks. MYB TFs are major TF superfamilies that play pivotal roles in regulation of transcriptional reprogramming, physiological processes, an...
Saved in:
| Published in | Frontiers in genetics Vol. 13; p. 946834 |
|---|---|
| Main Authors | , , , , , , , |
| Format | Journal Article |
| Language | English |
| Published |
Frontiers Media S.A
08.07.2022
|
| Subjects | |
| Online Access | Get full text |
| ISSN | 1664-8021 1664-8021 |
| DOI | 10.3389/fgene.2022.946834 |
Cover
| Abstract | Plant transcription factors (TFs) are significant players in transcriptional regulations, signal transduction, and constitute an integral part of signaling networks. MYB TFs are major TF superfamilies that play pivotal roles in regulation of transcriptional reprogramming, physiological processes, and abiotic stress (AbS) responses. To explore the understanding of MYB TFs, genome and transcriptome-wide identification was performed in the C3 model plant,
Oryza sativa
(
OsMYB
). This study retrieved 114
OsMYB
TFs that were computationally analyzed for their expression profiling, gene organization,
cis
-acting elements, and physicochemical properties. Based on the microarray datasets, six
OsMYB
genes which were sorted out and identified by a differential expression pattern were noted in various tissues. Systematic expression profiling of
OsMYB
TFs showed their meta-differential expression of different AbS treatments, spatio-temporal gene expression of various tissues and their growth in the field, and gene expression profiling in responses to phytohormones. In addition, the circular ideogram of
OsMYB
genes in related C4 grass plants conferred the gene synteny. Protein–protein interactions of these genes revealed the molecular crosstalk of
OsMYB
TFs. Transcriptional analysis (qPCR) of six
OsMYB
players in response to drought and salinity stress suggested the involvement in individual and combined AbS responses. To decipher how these
OsMYB
play functional roles in AbS dynamics, further research is a prerequisite. |
|---|---|
| AbstractList | Plant transcription factors (TFs) are significant players in transcriptional regulations, signal transduction, and constitute an integral part of signaling networks. MYB TFs are major TF superfamilies that play pivotal roles in regulation of transcriptional reprogramming, physiological processes, and abiotic stress (AbS) responses. To explore the understanding of MYB TFs, genome and transcriptome-wide identification was performed in the C3 model plant, Oryza sativa (OsMYB). This study retrieved 114 OsMYB TFs that were computationally analyzed for their expression profiling, gene organization, cis-acting elements, and physicochemical properties. Based on the microarray datasets, six OsMYB genes which were sorted out and identified by a differential expression pattern were noted in various tissues. Systematic expression profiling of OsMYB TFs showed their meta-differential expression of different AbS treatments, spatio-temporal gene expression of various tissues and their growth in the field, and gene expression profiling in responses to phytohormones. In addition, the circular ideogram of OsMYB genes in related C4 grass plants conferred the gene synteny. Protein–protein interactions of these genes revealed the molecular crosstalk of OsMYB TFs. Transcriptional analysis (qPCR) of six OsMYB players in response to drought and salinity stress suggested the involvement in individual and combined AbS responses. To decipher how these OsMYB play functional roles in AbS dynamics, further research is a prerequisite. Plant transcription factors (TFs) are significant players in transcriptional regulations, signal transduction, and constitute an integral part of signaling networks. MYB TFs are major TF superfamilies that play pivotal roles in regulation of transcriptional reprogramming, physiological processes, and abiotic stress (AbS) responses. To explore the understanding of MYB TFs, genome and transcriptome-wide identification was performed in the C3 model plant, Oryza sativa (OsMYB). This study retrieved 114 OsMYB TFs that were computationally analyzed for their expression profiling, gene organization, cis-acting elements, and physicochemical properties. Based on the microarray datasets, six OsMYB genes which were sorted out and identified by a differential expression pattern were noted in various tissues. Systematic expression profiling of OsMYB TFs showed their meta-differential expression of different AbS treatments, spatio-temporal gene expression of various tissues and their growth in the field, and gene expression profiling in responses to phytohormones. In addition, the circular ideogram of OsMYB genes in related C4 grass plants conferred the gene synteny. Protein-protein interactions of these genes revealed the molecular crosstalk of OsMYB TFs. Transcriptional analysis (qPCR) of six OsMYB players in response to drought and salinity stress suggested the involvement in individual and combined AbS responses. To decipher how these OsMYB play functional roles in AbS dynamics, further research is a prerequisite.Plant transcription factors (TFs) are significant players in transcriptional regulations, signal transduction, and constitute an integral part of signaling networks. MYB TFs are major TF superfamilies that play pivotal roles in regulation of transcriptional reprogramming, physiological processes, and abiotic stress (AbS) responses. To explore the understanding of MYB TFs, genome and transcriptome-wide identification was performed in the C3 model plant, Oryza sativa (OsMYB). This study retrieved 114 OsMYB TFs that were computationally analyzed for their expression profiling, gene organization, cis-acting elements, and physicochemical properties. Based on the microarray datasets, six OsMYB genes which were sorted out and identified by a differential expression pattern were noted in various tissues. Systematic expression profiling of OsMYB TFs showed their meta-differential expression of different AbS treatments, spatio-temporal gene expression of various tissues and their growth in the field, and gene expression profiling in responses to phytohormones. In addition, the circular ideogram of OsMYB genes in related C4 grass plants conferred the gene synteny. Protein-protein interactions of these genes revealed the molecular crosstalk of OsMYB TFs. Transcriptional analysis (qPCR) of six OsMYB players in response to drought and salinity stress suggested the involvement in individual and combined AbS responses. To decipher how these OsMYB play functional roles in AbS dynamics, further research is a prerequisite. Plant transcription factors (TFs) are significant players in transcriptional regulations, signal transduction, and constitute an integral part of signaling networks. MYB TFs are major TF superfamilies that play pivotal roles in regulation of transcriptional reprogramming, physiological processes, and abiotic stress (AbS) responses. To explore the understanding of MYB TFs, genome and transcriptome-wide identification was performed in the C3 model plant, Oryza sativa ( OsMYB ). This study retrieved 114 OsMYB TFs that were computationally analyzed for their expression profiling, gene organization, cis -acting elements, and physicochemical properties. Based on the microarray datasets, six OsMYB genes which were sorted out and identified by a differential expression pattern were noted in various tissues. Systematic expression profiling of OsMYB TFs showed their meta-differential expression of different AbS treatments, spatio-temporal gene expression of various tissues and their growth in the field, and gene expression profiling in responses to phytohormones. In addition, the circular ideogram of OsMYB genes in related C4 grass plants conferred the gene synteny. Protein–protein interactions of these genes revealed the molecular crosstalk of OsMYB TFs. Transcriptional analysis (qPCR) of six OsMYB players in response to drought and salinity stress suggested the involvement in individual and combined AbS responses. To decipher how these OsMYB play functional roles in AbS dynamics, further research is a prerequisite. |
| Author | Satish, Lakkakula Chen, Jen-Tsung Jeyasri, Rajendran Selvaraj, Anthonymuthu Shin, Hyunsuk Ramesh, Manikandan Wu, Qiang-Sheng Muthuramalingam, Pandiyan |
| AuthorAffiliation | 3 Department of GreenBio Science , Gyeongsang National University , Jinju , South Korea 2 Department of Horticultural Science , Gyeongsang National University , Jinju , South Korea 4 Department of Physiology and Biophysics, University of California, Irvine , Irvine , CA , United States 5 Department of Life Sciences , National University of Kaohsiung , Kaohsiung , Taiwan 7 College of Horticulture and Gardening , Yangtze University , Jingzhou , China 1 Department of Biotechnology, Science Campus, Alagappa University , Karaikudi , India 6 Department of Biotechnology Engineering , Ben-Gurion University of the Negev , Beer Sheva , Israel |
| AuthorAffiliation_xml | – name: 1 Department of Biotechnology, Science Campus, Alagappa University , Karaikudi , India – name: 5 Department of Life Sciences , National University of Kaohsiung , Kaohsiung , Taiwan – name: 6 Department of Biotechnology Engineering , Ben-Gurion University of the Negev , Beer Sheva , Israel – name: 7 College of Horticulture and Gardening , Yangtze University , Jingzhou , China – name: 2 Department of Horticultural Science , Gyeongsang National University , Jinju , South Korea – name: 3 Department of GreenBio Science , Gyeongsang National University , Jinju , South Korea – name: 4 Department of Physiology and Biophysics, University of California, Irvine , Irvine , CA , United States |
| Author_xml | – sequence: 1 givenname: Pandiyan surname: Muthuramalingam fullname: Muthuramalingam, Pandiyan – sequence: 2 givenname: Rajendran surname: Jeyasri fullname: Jeyasri, Rajendran – sequence: 3 givenname: Anthonymuthu surname: Selvaraj fullname: Selvaraj, Anthonymuthu – sequence: 4 givenname: Hyunsuk surname: Shin fullname: Shin, Hyunsuk – sequence: 5 givenname: Jen-Tsung surname: Chen fullname: Chen, Jen-Tsung – sequence: 6 givenname: Lakkakula surname: Satish fullname: Satish, Lakkakula – sequence: 7 givenname: Qiang-Sheng surname: Wu fullname: Wu, Qiang-Sheng – sequence: 8 givenname: Manikandan surname: Ramesh fullname: Ramesh, Manikandan |
| BookMark | eNp9ks1uEzEQx1eoiJbQB-DmYzkkeNf2rveCVCIaIqUqUtoDJ2vWOw6uNnawnUjh9XgxnKRCLQd8sTUf__mNZ94WZ847LIr3JZ0wJtuPZoUOJxWtqknLa8n4q-KirGs-lrQqz569z4vLGB9pPrxljPE3xTkTsmG8rS6K37PBdzCQuUu4CpCwJzN0fm01AdeT-wAu6mA36Wi6djDsI0biDbn9_vmZ23pHbkAnH8hyu8FgYG2HPbGOTBm59T0O5NsALpG7sP8FJEKyOyBXi8kH8uAC7A5-n9Alm2GmubTtM0zMXDs_7DJVVrrurE-ZYpkCxkiWdpVxrFu9K14bGCJePt2j4uHmy_3063hxN5tPrxdjzXmVxoJCLSU2jGkuWCM1a6hpQTSmagQi64Vg0lSt7ABlx3jdNJqjabVBw_KDjYr5Sbf38Kg2wa4h7JUHq44GH1YKQgYcUHWUGsDatDU0HHkJgnLEtqmE0ELSOmt9Omlttt0ae507DzC8EH3pcfaHWvmdahkVMo9xVFw9CQT_c4sxqbWNGof8yei3UVV1m7umJZc5tDyF6uBjDGj-limpOuySOu6SOuySOu1Szmn-ydE2wWHMmcYO_8n8A1Wn0-4 |
| CitedBy_id | crossref_primary_10_1038_s41467_024_53611_9 crossref_primary_10_3390_ijms25179205 crossref_primary_10_3390_su141610174 crossref_primary_10_3390_plants14060865 crossref_primary_10_1016_j_plaphy_2024_109419 crossref_primary_10_3390_ijms24129813 |
| Cites_doi | 10.1371/journal.pone.0052030 10.1007/s00299-010-0956-z 10.1101/gr.092759.109 10.1093/pcp/pcq196 10.1007/s13562-018-0440-3 10.1080/07391102.2020.1747548 10.1093/bioinformatics/btu817 10.1093/pcp/pcs070 10.1007/978-3-030-06118-0_12 10.1016/j.tplants.2004.12.012 10.1105/tpc.110.074609 10.1080/15592324.2015.1117723 10.1105/tpc.006130 10.1093/nar/27.1.297 10.1093/jxb/erq442 10.1126/science.290.5499.2105 10.3389/fpls.2015.00895 10.3389/fpls.2015.00748 10.1385/1-59259-890-0:571 10.1038/nature03895 10.1104/pp.104.04356210.1046/j.1365-313x.2003.01708.x 10.3389/fpls.2014.00170 10.1038/cr.2009.123 10.1093/nar/gkt1016 10.1371/journal.pone.0033748 10.1093/database/bat027 10.1093/nar/gkw937 10.1038/s41598-018-27703-8 10.1016/j.plantsci.2013.12.007 10.1016/j.ijbiomac.2020.07.143 10.3389/fpls.2017.00537 10.1186/1471-2164-13-544 10.1146/annurev-arplant-042809-112116 10.1104/pp.107.098061 10.1016/j.tplants.2005.11.002 10.1104/pp.106.094532 10.1007/s11103-018-0761-6 10.1104/pp.108.128579 10.1038/369661a0 10.1074/jbc.m403171200 10.1104/pp.104.900188 10.3389/fpls.2017.00759 10.1038/srep37025 10.1186/1471-2229-14-158 10.1007/s12298-013-0179-1 10.4172/jrr.1000e104 10.1590/1678-4324-2017160352 10.1093/nar/gkq1085 10.1093/nar/gkm259 10.1186/1939-8433-5-17 10.1134/s0006297909010015 10.1371/journal.pone.0099368 10.1093/nar/gks1125 10.3389/fpls.2015.01157 10.1002/9783527632930.ch14 10.3390/plants10071472 10.1016/j.tplants.2010.06.005 10.1007/s11105-012-0464-0 10.1105/tpc.111.083485 10.1016/j.ygeno.2019.06.006 10.3390/ijms160715811 10.1111/j.1365-313X.2010.04124.x 10.3906/tar-2102-5 10.1126/scisignal.2005051 10.1016/j.envexpbot.2014.06.014 10.1007/s12041-012-0201-3 10.1007/s12210-018-0702-y 10.1006/meth.2001.1262 |
| ContentType | Journal Article |
| Copyright | Copyright © 2022 Muthuramalingam, Jeyasri, Selvaraj, Shin, Chen, Satish, Wu and Ramesh. Copyright © 2022 Muthuramalingam, Jeyasri, Selvaraj, Shin, Chen, Satish, Wu and Ramesh. 2022 Muthuramalingam, Jeyasri, Selvaraj, Shin, Chen, Satish, Wu and Ramesh |
| Copyright_xml | – notice: Copyright © 2022 Muthuramalingam, Jeyasri, Selvaraj, Shin, Chen, Satish, Wu and Ramesh. – notice: Copyright © 2022 Muthuramalingam, Jeyasri, Selvaraj, Shin, Chen, Satish, Wu and Ramesh. 2022 Muthuramalingam, Jeyasri, Selvaraj, Shin, Chen, Satish, Wu and Ramesh |
| DBID | AAYXX CITATION 7X8 5PM DOA |
| DOI | 10.3389/fgene.2022.946834 |
| DatabaseName | CrossRef MEDLINE - Academic PubMed Central (Full Participant titles) DOAJ (Directory of Open Access Journals) |
| DatabaseTitle | CrossRef MEDLINE - Academic |
| DatabaseTitleList | MEDLINE - Academic CrossRef |
| Database_xml | – sequence: 1 dbid: DOA name: DOAJ Directory of Open Access Journals url: https://www.doaj.org/ sourceTypes: Open Website |
| DeliveryMethod | fulltext_linktorsrc |
| Discipline | Biology |
| DocumentTitleAlternate | Muthuramalingam et al |
| EISSN | 1664-8021 |
| ExternalDocumentID | oai_doaj_org_article_b00fae6f96a74e41a504ee97255c5806 PMC9305833 10_3389_fgene_2022_946834 |
| GroupedDBID | 53G 5VS 9T4 AAFWJ AAKDD AAYXX ACGFS ACXDI ADBBV ADRAZ AFPKN ALMA_UNASSIGNED_HOLDINGS AOIJS BAWUL BCNDV CITATION DIK EMOBN GROUPED_DOAJ GX1 HYE KQ8 M48 M~E OK1 PGMZT RNS RPM 7X8 5PM |
| ID | FETCH-LOGICAL-c442t-50a688e733c45378c370f9a57f275ee3d5538f298bae8b34677c4ef9cfef34ef3 |
| IEDL.DBID | M48 |
| ISSN | 1664-8021 |
| IngestDate | Wed Aug 27 01:30:28 EDT 2025 Thu Aug 21 18:21:47 EDT 2025 Fri Sep 05 06:57:33 EDT 2025 Thu Apr 24 23:08:16 EDT 2025 Tue Jul 01 04:09:49 EDT 2025 |
| IsDoiOpenAccess | true |
| IsOpenAccess | true |
| IsPeerReviewed | true |
| IsScholarly | true |
| Language | English |
| License | This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
| LinkModel | DirectLink |
| MergedId | FETCHMERGED-LOGICAL-c442t-50a688e733c45378c370f9a57f275ee3d5538f298bae8b34677c4ef9cfef34ef3 |
| Notes | ObjectType-Article-1 SourceType-Scholarly Journals-1 ObjectType-Feature-2 content type line 23 Reviewed by: Phanikanth Jogam, Kakatiya University, India Sezai Ercisli, Atatürk University, Turkey This article was submitted to Plant Genomics, a section of the journal Frontiers in Genetics Edited by: Karthikeyan Adhimoolam, Jeju National University, South Korea |
| OpenAccessLink | http://journals.scholarsportal.info/openUrl.xqy?doi=10.3389/fgene.2022.946834 |
| PMID | 35873492 |
| PQID | 2694420148 |
| PQPubID | 23479 |
| ParticipantIDs | doaj_primary_oai_doaj_org_article_b00fae6f96a74e41a504ee97255c5806 pubmedcentral_primary_oai_pubmedcentral_nih_gov_9305833 proquest_miscellaneous_2694420148 crossref_primary_10_3389_fgene_2022_946834 crossref_citationtrail_10_3389_fgene_2022_946834 |
| ProviderPackageCode | CITATION AAYXX |
| PublicationCentury | 2000 |
| PublicationDate | 2022-07-08 |
| PublicationDateYYYYMMDD | 2022-07-08 |
| PublicationDate_xml | – month: 07 year: 2022 text: 2022-07-08 day: 08 |
| PublicationDecade | 2020 |
| PublicationTitle | Frontiers in genetics |
| PublicationYear | 2022 |
| Publisher | Frontiers Media S.A |
| Publisher_xml | – name: Frontiers Media S.A |
| References | Muthuramalingam (B40); 164 Yilmaz (B65) 2009; 149 Cominelli (B10) 2009; 19 Udvardi (B59) 2007; 144 Muthuramalingam (B41); 8 Xie (B62) 2010; 22 Jin (B28) 2014; 42 Krzywinski (B32) 2009; 19 Sharoni (B55) 2011; 52 Yang (B64) 2014; 14 Gasteiger (B16) 2005 Mittler (B36) 2006; 11 Priya (B48) 2013 Wani (B61); 29 Deeba (B12) 2017; 60 Szklarczyk (B58) 2017; 45 Du (B13) 2009; 74 Muthuramalingam (B42) 2017; 8 Dubos (B14) 2010; 15 Breviario (B8) 2013; 2 Zhang (B68) 2012; 7 Bansal (B7) 2012 El-kereamy (B15) 2012; 7 Sato (B53) 2013; 41 Pandey (B47) 2017; 8 Sadiq (B51) 2020 Higo (B21) 1999; 27 Liang (B34) 2017; 7 Zhao (B69) 2014; 7 Horton (B23) 2007; 35 Hou (B24) 2012; 30 Abe (B1) 2003; 15 (B26) 2005; 436 Hadiarto (B18) 2011; 30 Livak (B35) 2001; 25 Hirayama (B22) 2010; 61 Noda (B46) 1994; 369 Sato (B52) 2010; 39 Dai (B11) 2007; 143 Nakashima (B44) 2014; 5 Hu (B25) 2015; 31 Araki (B5) 2004; 279 Kayihan (B30) 2021; 45 Hichri (B20) 2011; 62 Ambawat (B4) 2013; 19 Hernandez-Garcia (B19) 2014 Muthuramalingam (B38); 112 Akhtar (B3) 2012; 91 Smita (B57) 2015; 6 Katiyar (B29) 2012; 13 Singh (B56) 2015; 6 Wani (B60); 97 Cao (B9) 2012; 5 Muthuramalingam (B39) 2021; 39 Baldoni (B6) 2015; 16 Yu (B66) 2014; 9 Komaki (B31) 2012; 53 Riechmann (B49) 2000; 290 Yamaguchi-Shinozaki (B63) 2005; 10 Jeyasri (B27) 2021; 10 Muthuramalingam (B43); 27 Ahmad (B2) 2019 Zhang (B67) 2015; 6 Mittler (B37) 2010; 61 Grennan (B17) 2006; 140 Li (B33) 2015; 114 Narusaka (B45) 2003; 34 Roy (B50) 2016; 11 Seo (B54) 2011; 23 |
| References_xml | – volume: 7 start-page: e52030 year: 2012 ident: B15 article-title: The Rice R2R3-MYB Transcription Factor OsMYB55 Is Involved in the Tolerance to High Temperature and Modulates Amino Acid Metabolism publication-title: PLoS One doi: 10.1371/journal.pone.0052030 – volume: 30 start-page: 297 year: 2011 ident: B18 article-title: Progress studies of drought-responsive genes in rice publication-title: Plant Cell Rep. doi: 10.1007/s00299-010-0956-z – volume: 19 start-page: 1639 year: 2009 ident: B32 article-title: Circos: an information aesthetic for comparative genomics publication-title: Genome Res. doi: 10.1101/gr.092759.109 – volume: 52 start-page: 344 year: 2011 ident: B55 article-title: Gene structures, classification and expression models of the AP2/EREBP transcription factor family in rice publication-title: Plant Cell physiology doi: 10.1093/pcp/pcq196 – start-page: 797 volume-title: Plant Ecophysiology and Adaptation under Climate Change: Mechanisms and Perspectives year: 2020 ident: B51 article-title: Adaptive Physiological Responses of Plants under Abiotic Stresses: Role of Phytohormones – volume: 27 start-page: 300 ident: B43 article-title: Genome-wide identification of major transcription factor superfamilies in rice identifies key candidates involved in abiotic stress dynamism publication-title: J. Plant Biochem. Biotechnol. doi: 10.1007/s13562-018-0440-3 – volume: 39 start-page: 2106 year: 2021 ident: B39 article-title: Global transcriptome analysis of novel stress associated protein (SAP) genes expression dynamism of combined abiotic stresses in Oryza sativa (L.) publication-title: J. Biomol. Struct. Dyn. doi: 10.1080/07391102.2020.1747548 – volume: 31 start-page: 1296 year: 2015 ident: B25 article-title: GSDS 2.0: an upgraded gene feature visualization server publication-title: Bioinformatics doi: 10.1093/bioinformatics/btu817 – volume: 53 start-page: 953 year: 2012 ident: B31 article-title: Control of the plant cell cycle by developmental and environmental cues publication-title: Plant Cell Physiology doi: 10.1093/pcp/pcs070 – start-page: 273 volume-title: Plant Abiotic Stress Tolerance year: 2019 ident: B2 article-title: Role of Selective Exogenous Elicitors in Plant Responses to Abiotic Stress Tolerance doi: 10.1007/978-3-030-06118-0_12 – volume: 10 start-page: 88 year: 2005 ident: B63 article-title: Organization of cis-acting regulatory elements in osmotic- and cold-stress-responsive promoters publication-title: Trends Plant Sci. doi: 10.1016/j.tplants.2004.12.012 – volume: 22 start-page: 2306 year: 2010 ident: B62 article-title: Regulation of Cell Proliferation in the Stomatal Lineage by theArabidopsisMYB FOUR LIPS via Direct Targeting of Core Cell Cycle Genes publication-title: Plant Cell doi: 10.1105/tpc.110.074609 – volume: 11 start-page: e1117723 year: 2016 ident: B50 article-title: Function of MYB domain transcription factors in abiotic stress and epigenetic control of stress response in plant genome publication-title: Plant Signal. Behav. doi: 10.1080/15592324.2015.1117723 – volume: 15 start-page: 63 year: 2003 ident: B1 article-title: Arabidopsis AtMYC2 (bHLH) and AtMYB2 (MYB) Function as Transcriptional Activators in Abscisic Acid Signaling publication-title: Plant Cell doi: 10.1105/tpc.006130 – volume: 27 start-page: 297 year: 1999 ident: B21 article-title: Plant cis-acting regulatory DNA elements (PLACE) database: 1999 publication-title: Nucleic Acids Res. doi: 10.1093/nar/27.1.297 – volume: 62 start-page: 2465 year: 2011 ident: B20 article-title: Recent advances in the transcriptional regulation of the flavonoid biosynthetic pathway publication-title: J. Exp. Bot. doi: 10.1093/jxb/erq442 – volume: 290 start-page: 2105 year: 2000 ident: B49 article-title: Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes publication-title: Science doi: 10.1126/science.290.5499.2105 – volume: 6 start-page: 895 year: 2015 ident: B56 article-title: Transcriptional regulation of drought response: a tortuous network of transcriptional factors publication-title: Front. Plant Sci. doi: 10.3389/fpls.2015.00895 – volume: 6 start-page: 748 year: 2015 ident: B67 article-title: The heat shock factor gene family in Salix suchowensis: a genome-wide survey and expression profiling during development and abiotic stresses publication-title: Front. Plant Sci. doi: 10.3389/fpls.2015.00748 – start-page: 571 volume-title: The Proteomics Protocols Handbook year: 2005 ident: B16 article-title: Protein Identification and Analysis Tools on the ExPASy Server doi: 10.1385/1-59259-890-0:571 – volume: 436 start-page: 793 year: 2005 ident: B26 article-title: The map-based sequence of the rice genome publication-title: Nature doi: 10.1038/nature03895 – volume: 34 start-page: 137 year: 2003 ident: B45 article-title: Interaction between two cis-acting elements, ABRE and DRE, in ABA-dependent expression of Arabidopsis rd29A gene in response to dehydration and high-salinity stresses publication-title: Plant J. doi: 10.1104/pp.104.04356210.1046/j.1365-313x.2003.01708.x – volume: 5 start-page: 170 year: 2014 ident: B44 article-title: The transcriptional regulatory network in the drought response and its crosstalk in abiotic stress responses including drought, cold, and heat publication-title: Front. Plant Sci. doi: 10.3389/fpls.2014.00170 – volume: 19 start-page: 1231 year: 2009 ident: B10 article-title: A New Role for Plant R2R3-MYB Transcription Factors in Cell Cycle Regulation publication-title: Cell Res. doi: 10.1038/cr.2009.123 – volume: 42 start-page: D1182 year: 2014 ident: B28 article-title: PlantTFDB 3.0: a portal for the functional and evolutionary study of plant transcription factors publication-title: Nucl. Acids Res. doi: 10.1093/nar/gkt1016 – volume: 7 start-page: e33748 year: 2012 ident: B68 article-title: Identification of gene modules associated with drought response in rice by network-based Analysis publication-title: PLoS One doi: 10.1371/journal.pone.0033748 – year: 2013 ident: B48 article-title: RiceSRTFDB: a database of rice transcription factors containing comprehensive expression, cis-regulatory element and mutant information to facilitate gene function analysis publication-title: Database doi: 10.1093/database/bat027 – volume: 45 start-page: D362 year: 2017 ident: B58 article-title: The STRING database in 2017: quality-controlled protein-protein association networks, made broadly accessible publication-title: Nucleic Acids Res. doi: 10.1093/nar/gkw937 – volume: 8 start-page: 1 ident: B41 article-title: Global analysis of threonine metabolism genes unravel key players in rice to improve the abiotic stress tolerance publication-title: Sci. Rep. doi: 10.1038/s41598-018-27703-8 – start-page: 109 year: 2014 ident: B19 article-title: Identification and validation of promoters and cis-acting regulatory elements publication-title: Plant Sci. doi: 10.1016/j.plantsci.2013.12.007 – volume: 164 start-page: 222 ident: B40 article-title: Integrated transcriptomic and metabolomic analyses of glutamine metabolism genes unveil key players in Oryza sativa (L.) to ameliorate the unique and combined abiotic stress tolerance publication-title: Int. J. Biol. Macromol. doi: 10.1016/j.ijbiomac.2020.07.143 – volume: 8 start-page: 537 year: 2017 ident: B47 article-title: Impact of combined abiotic and biotic stresses on plant growth and avenues for crop improvement by exploiting physio-morphological traits publication-title: Front. plant Sci. doi: 10.3389/fpls.2017.00537 – volume: 13 start-page: 544 year: 2012 ident: B29 article-title: Genome-wide classification and expression analysis of MYB transcription factor families in rice and Arabidopsis publication-title: BMC Genomics doi: 10.1186/1471-2164-13-544 – volume: 61 start-page: 443 year: 2010 ident: B37 article-title: Genetic engineering for modern agriculture: challenges and perspectives publication-title: Annu. Rev. Plant Biol. doi: 10.1146/annurev-arplant-042809-112116 – volume: 144 start-page: 538 year: 2007 ident: B59 article-title: Legume transcription factors: global regulators of plant development and response to the environment publication-title: Plant Physiol. doi: 10.1104/pp.107.098061 – volume: 11 start-page: 15 year: 2006 ident: B36 article-title: Abiotic stress, the field environment and stress combination publication-title: Trends Plant Sci. doi: 10.1016/j.tplants.2005.11.002 – volume: 143 start-page: 1739 year: 2007 ident: B11 article-title: Overexpression of an R1R2R3 MYB Gene, OsMYB3R-2, Increases Tolerance to Freezing, Drought, and Salt Stress in Transgenic Arabidopsis publication-title: Plant Physiol. doi: 10.1104/pp.106.094532 – volume: 97 start-page: 469 ident: B60 article-title: Transcriptional regulation of osmotic stress tolerance in wheat (Triticum aestivum L.) publication-title: Plant Mol. Biol. doi: 10.1007/s11103-018-0761-6 – volume: 149 start-page: 171 year: 2009 ident: B65 article-title: GRASSIUS: A Platform for Comparative Regulatory Genomics across the Grasses publication-title: Plant Physiol. doi: 10.1104/pp.108.128579 – volume: 369 start-page: 661 year: 1994 ident: B46 article-title: Flower colour intensity depends on specialized cell shape controlled by a Myb-related transcription factor publication-title: Nature doi: 10.1038/369661a0 – volume: 279 start-page: 32979 year: 2004 ident: B5 article-title: Mitotic Cyclins Stimulate the Activity of C-myb-like Factors for Transactivation of G2/M Phase-specific Genes in Tobacco publication-title: J. Biol. Chem. doi: 10.1074/jbc.m403171200 – volume: 140 start-page: 1139 year: 2006 ident: B17 article-title: Abiotic stress in rice. An “omic” approach publication-title: Plant Physiol. doi: 10.1104/pp.104.900188 – volume: 8 start-page: 759 year: 2017 ident: B42 article-title: Global transcriptome analysis of combined abiotic stress signaling genes unravels key players in Oryza sativa L.: an In Silico approach publication-title: Front. Plant Sci. doi: 10.3389/fpls.2017.00759 – volume: 7 start-page: 37025 year: 2017 ident: B34 article-title: Analysis of carotenogenic genes promoters and WRKY transcription factors in response to salt stress in Dunaliella bardawil publication-title: Sci. Rep. doi: 10.1038/srep37025 – volume: 14 start-page: 158 year: 2014 ident: B64 article-title: OsMYB103L, an R2R3-MYB transcription factor, influences leaf rolling and mechanical strength in rice (Oryza sativaL.) publication-title: BMC Plant Biol. doi: 10.1186/1471-2229-14-158 – volume: 19 start-page: 307 year: 2013 ident: B4 article-title: MYB Transcription Factor Genes as Regulators for Plant Responses: an Overview publication-title: Physiol. Mol. Biol. Plants doi: 10.1007/s12298-013-0179-1 – volume: 2 year: 2013 ident: B8 article-title: Stress Response in Rice publication-title: J. Rice Res. doi: 10.4172/jrr.1000e104 – volume: 60 year: 2017 ident: B12 article-title: Molecular Characterization of a MYB Protein from Oryza Sativa for its Role in Abiotic Stress Tolerance publication-title: Braz. Arch. Biol. Technol. doi: 10.1590/1678-4324-2017160352 – volume: 39 start-page: D1141 year: 2010 ident: B52 article-title: RiceXPro: a platform for monitoring gene expression in japonica rice grown under natural field conditions publication-title: Nucleic Acids Res. doi: 10.1093/nar/gkq1085 – volume: 35 start-page: W585 year: 2007 ident: B23 article-title: WoLF PSORT: protein localization predictor publication-title: Nucleic Acids Res. doi: 10.1093/nar/gkm259 – volume: 5 start-page: 17 year: 2012 ident: B9 article-title: The Rice Oligonucleotide Array Database: an Atlas of Rice Gene Expression publication-title: Rice doi: 10.1186/1939-8433-5-17 – volume: 74 start-page: 1 year: 2009 ident: B13 article-title: Biochemical and Molecular Characterization of Plant MYB Transcription Factor Family publication-title: Biochem. Mosc. doi: 10.1134/s0006297909010015 – volume: 9 start-page: e99368 year: 2014 ident: B66 article-title: CELLO2GO: a web server for protein subcellular localization prediction with functional gene ontology annotation publication-title: PLoS One doi: 10.1371/journal.pone.0099368 – volume: 41 start-page: D1206 year: 2013 ident: B53 article-title: RiceXPro Version 3.0: Expanding the informatics resource for rice transcriptome publication-title: Nucleic Acids Res. doi: 10.1093/nar/gks1125 – volume: 6 start-page: 1157 year: 2015 ident: B57 article-title: Transcriptional regulatory network analysis of MYB transcription factor family genes in rice publication-title: Front. plant Sci. doi: 10.3389/fpls.2015.01157 – start-page: 321 year: 2012 ident: B7 article-title: Functional Genomics and Computational Biology Tools for Gene Discovery for Abiotic Stress Tolerance publication-title: Improv. Crop Resist. Abiotic Stress doi: 10.1002/9783527632930.ch14 – volume: 10 start-page: 1472 year: 2021 ident: B27 article-title: An Overview of Abiotic Stress in Cereal Crops: Negative Impacts, Regulation, Biotechnology and Integrated Omics publication-title: Plants doi: 10.3390/plants10071472 – volume: 15 start-page: 573 year: 2010 ident: B14 article-title: MYB Transcription Factors in Arabidopsis publication-title: Trends Plant Sci. doi: 10.1016/j.tplants.2010.06.005 – volume: 30 start-page: 1496 year: 2012 ident: B24 article-title: Construction of stress responsive synthetic promoters and analysis of their activity in transgenic Arabidopsis thaliana publication-title: Plant Mol. Biol. Rep. doi: 10.1007/s11105-012-0464-0 – volume: 23 start-page: 1138 year: 2011 ident: B54 article-title: The MYB96 Transcription Factor Regulates Cuticular Wax Biosynthesis under Drought Conditions inArabidopsis publication-title: Plant Cell doi: 10.1105/tpc.111.083485 – volume: 112 start-page: 908 ident: B38 article-title: Global integrated omics expression analyses of abiotic stress signaling HSF transcription factor genes in Oryza sativa L.: An In Silico approach publication-title: Genomics doi: 10.1016/j.ygeno.2019.06.006 – volume: 16 start-page: 15811 year: 2015 ident: B6 article-title: Plant MYB Transcription Factors: Their Role in Drought Response Mechanisms publication-title: Ijms doi: 10.3390/ijms160715811 – volume: 61 start-page: 1041 year: 2010 ident: B22 article-title: Research on plant abiotic stress responses in the post-genome era: past, present and future publication-title: Plant J. doi: 10.1111/j.1365-313X.2010.04124.x – volume: 45 start-page: 411 year: 2021 ident: B30 article-title: Identification and expression profiling of toxic boron-responsive microRNAs and their targets in sensitive and tolerant wheat cultivars publication-title: Turk J Agric doi: 10.3906/tar-2102-5 – volume: 7 start-page: ra53 year: 2014 ident: B69 article-title: The ABA receptor PYL8 promotes lateral root growth by enhancing MYB77-dependent transcription of auxin-responsive genes publication-title: Sci. Signal. doi: 10.1126/scisignal.2005051 – volume: 114 start-page: 80 year: 2015 ident: B33 article-title: MYB transcription factors, active players in abiotic stress signaling publication-title: Environ. Exp. Bot. doi: 10.1016/j.envexpbot.2014.06.014 – volume: 91 start-page: 385 year: 2012 ident: B3 article-title: DREB1/CBF Transcription Factors: Their Structure, Function and Role in Abiotic Stress Tolerance in Plants publication-title: J. Genet. doi: 10.1007/s12041-012-0201-3 – volume: 29 start-page: 709 ident: B61 article-title: Engineering plants for heavy metal stress tolerance publication-title: Rend. Fis. Acc. Lincei doi: 10.1007/s12210-018-0702-y – volume: 25 start-page: 402 year: 2001 ident: B35 article-title: Analysis of Relative Gene Expression Data Using Real-Time Quantitative PCR and the 2−ΔΔCT Method publication-title: Methods doi: 10.1006/meth.2001.1262 |
| SSID | ssj0000493334 |
| Score | 2.338833 |
| Snippet | Plant transcription factors (TFs) are significant players in transcriptional regulations, signal transduction, and constitute an integral part of signaling... |
| SourceID | doaj pubmedcentral proquest crossref |
| SourceType | Open Website Open Access Repository Aggregation Database Enrichment Source Index Database |
| StartPage | 946834 |
| SubjectTerms | abiotic stress comparative mapping Genetics MYB Oryza sativa phytohormone qPCR |
| SummonAdditionalLinks | – databaseName: DOAJ (Directory of Open Access Journals) dbid: DOA link: http://utb.summon.serialssolutions.com/2.0.0/link/0/eLvHCXMwrV1Lb9QwELZQJSQuiKdYoGiQOABSShLb6_jYrlgKonBYViqnyEnG7aIqqXazldq_xx9jxt6tNhe4cIviPCaZ8Xhsz3yfEG-46pe6jU2Mb5pEZXWTuNq5hEYihzZP0WkuFD75Nj6eqy-n-nSH6otzwiI8cPxxTHLoHY69HTujUGVOpwrRGgqFa11EsO3UpjuTqV8x7pVSqriNSbMw-8GTPhgWM88PrBoXUg0GooDXPwgyhymSO2PO9IG4vwkW4TAK-VDcwfaRuBvpI68fi98RsB8-byEfGviEocwYXNtAGIaCUwinIvwIrqDzcPLzaKeZVAPTwLsDs_UlLuOiByxamEhgsrQLYG6jHr4vr28ccP7PlYO3Xw_ewbxl-iJq73pOOyJhJlwnw8sIK5KLfN8VSUVPOqwWHX0FzEJtCswWZzwDaM-eiPn044_JcbIhZUhqpfI-0akbFwUaKWulpSlqaVJvnTY-NxpRNppcqM9tUTksKkl-2NQKva09ekkH8qnYa7sWnwmoKHZssoyajKO4SFcolc1ybzKUsrJ-JNKthsp6g1jOxBkXJc1cWKllUGrJSi2jUkfi_e0tlxGu428XH7Haby9kpO1wguyv3Nhf-S_7G4nXW6MpqWfydotrsVuvSq4RVjmv2I6EGVjT4I3DlnZxHjC-LfnhQsrn_0PEF-Ief3VIMi5eir1-ucZ9CqX66lXoNX8AHK0hbA priority: 102 providerName: Directory of Open Access Journals |
| Title | Global Integrated Genomic and Transcriptomic Analyses of MYB Transcription Factor Superfamily in C3 Model Plant Oryza sativa (L.) Unravel Potential Candidates Involved in Abiotic Stress Signaling |
| URI | https://www.proquest.com/docview/2694420148 https://pubmed.ncbi.nlm.nih.gov/PMC9305833 https://doaj.org/article/b00fae6f96a74e41a504ee97255c5806 |
| Volume | 13 |
| hasFullText | 1 |
| inHoldings | 1 |
| isFullTextHit | |
| isPrint | |
| link | http://utb.summon.serialssolutions.com/2.0.0/link/0/eLvHCXMwjV3db9MwELfGEBIviE9RPiYj8QBIKUlsx_EDQltFNxCDh1KpPEVOcu6KqmS06UT59_jHuHPSaZEmxEsUxYlj53Jf9t39GHtJWb_INibQriwDGRVlYAtrA9REFkwcglWUKHz6JTmZyk8zNdtjO3ir7gOur3XtCE9quloOf_3cvkeGf0ceJ-rbtw4_NVW8jOOhkUkq5A12028XUSRfZ-3_aI1hIdp95iSRKJvjqN3nvL6XnqbyBf17Vmg_hvKKUhrfZXc6a5IftuS_x_agus9utfiS2wfsT1vRn3_c1YQo-TH4PGRuq5J7PeWlhr_U1ieBNa8dP_1-dKUZacfHHpiHTzbnsGpXRfii4iPBCU1tyQn8qOFfV9vfllOA0IXlrz4PX_NpRfhG2F43FJeEgxlRIg2tM6xxXCgcL3BU2NNhvqhxFnzik1f4ZDEnF6GaP2TT8Ydvo5OgQ20ICinjJlChTdIUtBCFVEKnhdChM1ZpF2sFIEqFMtbFJs0tpLlAQa0LCc4UDpzAE_GI7Vd1BY8Zz9G4LKMIm7RFw0nlIKSJYqcjECI3bsDCHYWyoitpTsgaywxdGyJq5omaEVGzlqgD9ubykfO2nse_bj4isl_eSKW4_YV6Nc86zs5QbjkLiTOJ1RJkZFUoAYxGX61QaZgM2IvdT5Mh69J-jK2g3qwzSiKWMS3pDpju_U29N_ZbqsWZLwJuUFCnQjz5j96fsts0KR9knD5j-81qA8_RlGryA78EgcfjWXTgmeUvPzoiww |
| linkProvider | Scholars Portal |
| openUrl | ctx_ver=Z39.88-2004&ctx_enc=info%3Aofi%2Fenc%3AUTF-8&rfr_id=info%3Asid%2Fsummon.serialssolutions.com&rft_val_fmt=info%3Aofi%2Ffmt%3Akev%3Amtx%3Ajournal&rft.genre=article&rft.atitle=Global+Integrated+Genomic+and+Transcriptomic+Analyses+of+MYB+Transcription+Factor+Superfamily+in+C3+Model+Plant+Oryza+sativa+%28L.%29+Unravel+Potential+Candidates+Involved+in+Abiotic+Stress+Signaling&rft.jtitle=Frontiers+in+genetics&rft.au=Muthuramalingam%2C+Pandiyan&rft.au=Jeyasri%2C+Rajendran&rft.au=Selvaraj%2C+Anthonymuthu&rft.au=Shin%2C+Hyunsuk&rft.date=2022-07-08&rft.issn=1664-8021&rft.eissn=1664-8021&rft.volume=13&rft.spage=946834&rft_id=info:doi/10.3389%2Ffgene.2022.946834&rft.externalDBID=NO_FULL_TEXT |
| thumbnail_l | http://covers-cdn.summon.serialssolutions.com/index.aspx?isbn=/lc.gif&issn=1664-8021&client=summon |
| thumbnail_m | http://covers-cdn.summon.serialssolutions.com/index.aspx?isbn=/mc.gif&issn=1664-8021&client=summon |
| thumbnail_s | http://covers-cdn.summon.serialssolutions.com/index.aspx?isbn=/sc.gif&issn=1664-8021&client=summon |