Pedobacter aquicola sp. nov., isolated from freshwater

A non-motile, pink-pigmented bacterial strain designated IMCC25679 T , was isolated from freshwater Lake Chungju of Korea. Phylogenetic trees based on 16S rRNA gene sequences showed that the strain IMCC25679 T formed a lineage within the genus Pedobacter . The strain IMCC25679 T was closely related...

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Published inThe journal of microbiology Vol. 56; no. 7; pp. 478 - 484
Main Authors Joung, Yochan, Jang, Hye-jin, Park, Miri, Song, Jaeho, Cho, Jang-Cheon
Format Journal Article
LanguageEnglish
Published Seoul The Microbiological Society of Korea 01.07.2018
Springer Nature B.V
한국미생물학회
Subjects
Bacterial Typing Techniques
Base Composition
Biomedical and Life Sciences
Deoxyribonucleic acid
DNA
DNA, Bacterial - genetics
Fatty acids
Fatty Acids - analysis
Fresh Water - microbiology
Freshwater
Freshwater lakes
Gene sequencing
Inland water environment
Lakes
Life Sciences
Lipids
Microbiological strains
Microbiology
New species
Nucleotide sequence
nucleotide sequences
Pedobacter
Pedobacter - chemistry
Pedobacter - classification
Pedobacter - genetics
Pedobacter - isolation & purification
Phosphatidylethanolamine
Phosphatidylethanolamines
Phylogeny
Quinones
Republic of Korea
ribosomal DNA
ribosomal RNA
RNA, Ribosomal, 16S - genetics
rRNA 16S
Sequence Analysis, DNA
sequence homology
South Korea
sphingolipids
Sphingolipids - analysis
Vitamin K 2 - analysis
생물학
South Korea
16S rRNA gene sequences
polyphasic analysis
freshwater
sp. nov
Pedobacter aquatica sp. nov
Online AccessGet full text
ISSN1225-8873
1976-3794
1976-3794
DOI10.1007/s12275-018-7499-3

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Abstract A non-motile, pink-pigmented bacterial strain designated IMCC25679 T , was isolated from freshwater Lake Chungju of Korea. Phylogenetic trees based on 16S rRNA gene sequences showed that the strain IMCC25679 T formed a lineage within the genus Pedobacter . The strain IMCC25679 T was closely related to Pedobacter daechungensis Dae 13 T (96.4% sequence similarity), Pedobacter rivuli HME8457 T (95.3%) and Pedobacter lentus DS-40 T (94.3%). The major fatty acids of IMCC- 25679 T were iso-C 15:0 , iso-C 16:0 and summed feature 3 (comprising C 16:1 ω 6 c and/or C 16:1 ω 7 c ). The major respiratory quinone was MK-7. The major polar lipids were phosphatidylethanolamine (PE), an unidentified sphingolipid (SL), an unidentified aminolipid (AL) and three unidentified polar lipids (PL). The DNA G + C content of IMCC25679 T was 32.2 mol%. Based on the evidence presented in this study, the strain IMCC25679 T represents a novel species within the genus Pedobacter , with the proposed name Pedobacter aquicola , sp. nov. The type strain is IMCC25679 T (= KACC 19486 T = NBRC113131 T ).
AbstractList A non-motile, pink-pigmented bacterial strain designated IMCC25679T, was isolated from freshwater Lake Chungju of Korea. Phylogenetic trees based on 16S rRNA gene sequences showed that the strain IMCC25679T formed a lineage within the genus Pedobacter. The strain IMCC25679T was closely related to Pedobacter daechungensis Dae 13T (96.4% sequence similarity), Pedobacter rivuli HME8457T (95.3%) and Pedobacter lentus DS-40T (94.3%). The major fatty acids of IMCC- 25679T were iso-C15:0, iso-C16:0 and summed feature 3 (comprising C16:1ω6c and/or C16:1ω7c). The major respiratory quinone was MK-7. The major polar lipids were phosphatidylethanolamine (PE), an unidentified sphingolipid (SL), an unidentified aminolipid (AL) and three unidentified polar lipids (PL). The DNA G + C content of IMCC25679T was 32.2 mol%. Based on the evidence presented in this study, the strain IMCC25679T represents a novel species within the genus Pedobacter, with the proposed name Pedobacter aquicola, sp. nov. The type strain is IMCC25679T (= KACC 19486T = NBRC113131T).A non-motile, pink-pigmented bacterial strain designated IMCC25679T, was isolated from freshwater Lake Chungju of Korea. Phylogenetic trees based on 16S rRNA gene sequences showed that the strain IMCC25679T formed a lineage within the genus Pedobacter. The strain IMCC25679T was closely related to Pedobacter daechungensis Dae 13T (96.4% sequence similarity), Pedobacter rivuli HME8457T (95.3%) and Pedobacter lentus DS-40T (94.3%). The major fatty acids of IMCC- 25679T were iso-C15:0, iso-C16:0 and summed feature 3 (comprising C16:1ω6c and/or C16:1ω7c). The major respiratory quinone was MK-7. The major polar lipids were phosphatidylethanolamine (PE), an unidentified sphingolipid (SL), an unidentified aminolipid (AL) and three unidentified polar lipids (PL). The DNA G + C content of IMCC25679T was 32.2 mol%. Based on the evidence presented in this study, the strain IMCC25679T represents a novel species within the genus Pedobacter, with the proposed name Pedobacter aquicola, sp. nov. The type strain is IMCC25679T (= KACC 19486T = NBRC113131T).
A non-motile, pink-pigmented bacterial strain designated IMCC25679T, was isolated from freshwater Lake Chungju of Korea. Phylogenetic trees based on 16S rRNA gene sequences showed that the strain IMCC25679T formed a lineage within the genus Pedobacter. The strain IMCC25679T was closely related to Pedobacter daechungensis Dae 13T (96.4% sequence similarity), Pedobacter rivuli HME8457T (95.3%) and Pedobacter lentus DS-40T (94.3%). The major fatty acids of IMCC- 25679T were iso-C15:0, iso-C16:0 and summed feature 3 (comprising C16:1ω6c and/or C16:1ω7c). The major respiratory quinone was MK-7. The major polar lipids were phosphatidylethanolamine (PE), an unidentified sphingolipid (SL), an unidentified aminolipid (AL) and three unidentified polar lipids (PL). The DNA G + C content of IMCC25679T was 32.2 mol%. Based on the evidence presented in this study, the strain IMCC25679T represents a novel species within the genus Pedobacter, with the proposed name Pedobacter aquicola, sp. nov. The type strain is IMCC25679T (= KACC 19486T = NBRC113131T).
A non-motile, pink-pigmented bacterial strain designated IMCC25679T, was isolated from freshwater Lake Chungju of Korea. Phylogenetic trees based on 16S rRNA gene sequences showed that the strain IMCC25679T formed a lineage within the genus Pedobacter. The strain IMCC25679T was closely related to Pedobacter daechungensis Dae 13T (96.4% sequence similarity), Pedobacter rivuli HME8457T (95.3%) and Pedobacter lentus DS-40T (94.3%). The major fatty acids of IMCC- 25679T were iso-C15:0, iso-C16:0 and summed feature 3 (comprising C16:1 ω6c and/or C16:1 ω7c). The major respiratory quinone was MK-7. The major polar lipids were phosphatidylethanolamine (PE), an unidentified sphingolipid (SL), an unidentified aminolipid (AL) and three unidentified polar lipids (PL). The DNA G + C content of IMCC25679T was 32.2 mol%. Based on the evidence presented in this study, the strain IMCC25679T represents a novel species within the genus Pedobacter, with the proposed name Pedobacter aquicola, sp. nov. The type strain is IMCC25679T (= KACC 19486T = NBRC113131T). KCI Citation Count: 7
A non-motile, pink-pigmented bacterial strain designated IMCC25679ᵀ, was isolated from freshwater Lake Chungju of Korea. Phylogenetic trees based on 16S rRNA gene sequences showed that the strain IMCC25679ᵀ formed a lineage within the genus Pedobacter. The strain IMCC25679ᵀ was closely related to Pedobacter daechungensis Dae 13ᵀ (96.4% sequence similarity), Pedobacter rivuli HME8457ᵀ (95.3%) and Pedobacter lentus DS-40ᵀ (94.3%). The major fatty acids of IMCC- 25679ᵀ were iso-C₁₅:₀, iso-C₁₆:₀ and summed feature 3 (comprising C₁₆:₁ω6c and/or C₁₆:₁ω7c). The major respiratory quinone was MK-7. The major polar lipids were phosphatidylethanolamine (PE), an unidentified sphingolipid (SL), an unidentified aminolipid (AL) and three unidentified polar lipids (PL). The DNA G + C content of IMCC25679ᵀ was 32.2 mol%. Based on the evidence presented in this study, the strain IMCC25679ᵀ represents a novel species within the genus Pedobacter, with the proposed name Pedobacter aquicola, sp. nov. The type strain is IMCC25679ᵀ (= KACC 19486ᵀ = NBRC113131ᵀ).
A non-motile, pink-pigmented bacterial strain designated IMCC25679 T , was isolated from freshwater Lake Chungju of Korea. Phylogenetic trees based on 16S rRNA gene sequences showed that the strain IMCC25679 T formed a lineage within the genus Pedobacter . The strain IMCC25679 T was closely related to Pedobacter daechungensis Dae 13 T (96.4% sequence similarity), Pedobacter rivuli HME8457 T (95.3%) and Pedobacter lentus DS-40 T (94.3%). The major fatty acids of IMCC- 25679 T were iso-C 15:0 , iso-C 16:0 and summed feature 3 (comprising C 16:1 ω 6 c and/or C 16:1 ω 7 c ). The major respiratory quinone was MK-7. The major polar lipids were phosphatidylethanolamine (PE), an unidentified sphingolipid (SL), an unidentified aminolipid (AL) and three unidentified polar lipids (PL). The DNA G + C content of IMCC25679 T was 32.2 mol%. Based on the evidence presented in this study, the strain IMCC25679 T represents a novel species within the genus Pedobacter , with the proposed name Pedobacter aquicola , sp. nov. The type strain is IMCC25679 T (= KACC 19486 T = NBRC113131 T ).
A non-motile, pink-pigmented bacterial strain designated IMCC25679 , was isolated from freshwater Lake Chungju of Korea. Phylogenetic trees based on 16S rRNA gene sequences showed that the strain IMCC25679 formed a lineage within the genus Pedobacter. The strain IMCC25679 was closely related to Pedobacter daechungensis Dae 13 (96.4% sequence similarity), Pedobacter rivuli HME8457 (95.3%) and Pedobacter lentus DS-40 (94.3%). The major fatty acids of IMCC- 25679 were iso-C , iso-C and summed feature 3 (comprising C ω6c and/or C ω7c). The major respiratory quinone was MK-7. The major polar lipids were phosphatidylethanolamine (PE), an unidentified sphingolipid (SL), an unidentified aminolipid (AL) and three unidentified polar lipids (PL). The DNA G + C content of IMCC25679 was 32.2 mol%. Based on the evidence presented in this study, the strain IMCC25679 represents a novel species within the genus Pedobacter, with the proposed name Pedobacter aquicola, sp. nov. The type strain is IMCC25679 (= KACC 19486 = NBRC113131 ).
Author Song, Jaeho
Jang, Hye-jin
Cho, Jang-Cheon
Joung, Yochan
Park, Miri
Author_xml – sequence: 1
  givenname: Yochan
  surname: Joung
  fullname: Joung, Yochan
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  organization: Department of Biological Science, Inha University
– sequence: 2
  givenname: Hye-jin
  surname: Jang
  fullname: Jang, Hye-jin
  organization: Department of Biological Science, Inha University
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  surname: Park
  fullname: Park, Miri
  organization: Department of Biological Science, Inha University
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  surname: Song
  fullname: Song, Jaeho
  organization: Department of Biological Science, Inha University
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  givenname: Jang-Cheon
  surname: Cho
  fullname: Cho, Jang-Cheon
  organization: Department of Biological Science, Inha University
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1976-3794
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IsScholarly true
Issue 7
Keywords 16S rRNA gene sequences
polyphasic analysis
freshwater
sp. nov
Pedobacter aquatica sp. nov
Language English
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PMID 29948823
PQID 2055368397
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PageCount 7
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crossref_primary_10_1007_s12275_018_7499_3
crossref_citationtrail_10_1007_s12275_018_7499_3
springer_journals_10_1007_s12275_018_7499_3
ProviderPackageCode CITATION
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PublicationCentury 2000
PublicationDate 20180700
2018-7-00
2018-Jul
20180701
2018-07
PublicationDateYYYYMMDD 2018-07-01
PublicationDate_xml – month: 7
  year: 2018
  text: 20180700
PublicationDecade 2010
PublicationPlace Seoul
PublicationPlace_xml – name: Seoul
– name: Korea (South)
PublicationTitle The journal of microbiology
PublicationTitleAbbrev J Microbiol
PublicationTitleAlternate J Microbiol
PublicationYear 2018
Publisher The Microbiological Society of Korea
Springer Nature B.V
한국미생물학회
Publisher_xml – name: The Microbiological Society of Korea
– name: Springer Nature B.V
– name: 한국미생물학회
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Snippet A non-motile, pink-pigmented bacterial strain designated IMCC25679 T , was isolated from freshwater Lake Chungju of Korea. Phylogenetic trees based on 16S rRNA...
A non-motile, pink-pigmented bacterial strain designated IMCC25679 , was isolated from freshwater Lake Chungju of Korea. Phylogenetic trees based on 16S rRNA...
A non-motile, pink-pigmented bacterial strain designated IMCC25679T, was isolated from freshwater Lake Chungju of Korea. Phylogenetic trees based on 16S rRNA...
A non-motile, pink-pigmented bacterial strain designated IMCC25679ᵀ, was isolated from freshwater Lake Chungju of Korea. Phylogenetic trees based on 16S rRNA...
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SubjectTerms Bacterial Typing Techniques
Base Composition
Biomedical and Life Sciences
Deoxyribonucleic acid
DNA
DNA, Bacterial - genetics
Fatty acids
Fatty Acids - analysis
Fresh Water - microbiology
Freshwater
Freshwater lakes
Gene sequencing
Inland water environment
Lakes
Life Sciences
Lipids
Microbiological strains
Microbiology
New species
Nucleotide sequence
nucleotide sequences
Pedobacter
Pedobacter - chemistry
Pedobacter - classification
Pedobacter - genetics
Pedobacter - isolation & purification
Phosphatidylethanolamine
Phosphatidylethanolamines
Phylogeny
Quinones
Republic of Korea
ribosomal DNA
ribosomal RNA
RNA, Ribosomal, 16S - genetics
rRNA 16S
Sequence Analysis, DNA
sequence homology
South Korea
sphingolipids
Sphingolipids - analysis
Vitamin K 2 - analysis
생물학
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Title Pedobacter aquicola sp. nov., isolated from freshwater
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