Drug-resistant tuberculosis: a persistent global health concern
Drug-resistant tuberculosis (TB) is estimated to cause 13% of all antimicrobial resistance-attributable deaths worldwide and is driven by both ongoing resistance acquisition and person-to-person transmission. Poor outcomes are exacerbated by late diagnosis and inadequate access to effective treatmen...
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| Published in | Nature reviews. Microbiology Vol. 22; no. 10; pp. 617 - 635 |
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| Main Authors | , , , , , , , , , , |
| Format | Journal Article |
| Language | English |
| Published |
London
Nature Publishing Group UK
01.10.2024
Nature Publishing Group |
| Subjects | |
| Online Access | Get full text |
| ISSN | 1740-1526 1740-1534 1740-1534 |
| DOI | 10.1038/s41579-024-01025-1 |
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| Abstract | Drug-resistant tuberculosis (TB) is estimated to cause 13% of all antimicrobial resistance-attributable deaths worldwide and is driven by both ongoing resistance acquisition and person-to-person transmission. Poor outcomes are exacerbated by late diagnosis and inadequate access to effective treatment. Advances in rapid molecular testing have recently improved the diagnosis of TB and drug resistance. Next-generation sequencing of
Mycobacterium tuberculosis
has increased our understanding of genetic resistance mechanisms and can now detect mutations associated with resistance phenotypes. All-oral, shorter drug regimens that can achieve high cure rates of drug-resistant TB within 6–9 months are now available and recommended but have yet to be scaled to global clinical use. Promising regimens for the prevention of drug-resistant TB among high-risk contacts are supported by early clinical trial data but final results are pending. A person-centred approach is crucial in managing drug-resistant TB to reduce the risk of poor treatment outcomes, side effects, stigma and mental health burden associated with the diagnosis. In this Review, we describe current surveillance of drug-resistant TB and the causes, risk factors and determinants of drug resistance as well as the stigma and mental health considerations associated with it. We discuss recent advances in diagnostics and drug-susceptibility testing and outline the progress in developing better treatment and preventive therapies.
In this Review, Pai and colleagues examine the global landscape of drug-resistant tuberculosis, exploring its epidemiology, causes, risk factors, stigma and associated mental health burden as well as discussing the most recent developments in diagnostics, treatment and preventive regimens. |
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| AbstractList | Drug-resistant tuberculosis (TB) is estimated to cause 13% of all antimicrobial resistance-attributable deaths worldwide and is driven by both ongoing resistance acquisition and person-to-person transmission. Poor outcomes are exacerbated by late diagnosis and inadequate access to effective treatment. Advances in rapid molecular testing have recently improved the diagnosis of TB and drug resistance. Next-generation sequencing of Mycobacterium tuberculosis has increased our understanding of genetic resistance mechanisms and can now detect mutations associated with resistance phenotypes. All-oral, shorter drug regimens that can achieve high cure rates of drug-resistant TB within 6–9 months are now available and recommended but have yet to be scaled to global clinical use. Promising regimens for the prevention of drug-resistant TB among high-risk contacts are supported by early clinical trial data but final results are pending. A person-centred approach is crucial in managing drug-resistant TB to reduce the risk of poor treatment outcomes, side effects, stigma and mental health burden associated with the diagnosis. In this Review, we describe current surveillance of drug-resistant TB and the causes, risk factors and determinants of drug resistance as well as the stigma and mental health considerations associated with it. We discuss recent advances in diagnostics and drug-susceptibility testing and outline the progress in developing better treatment and preventive therapies.In this Review, Pai and colleagues examine the global landscape of drug-resistant tuberculosis, exploring its epidemiology, causes, risk factors, stigma and associated mental health burden as well as discussing the most recent developments in diagnostics, treatment and preventive regimens. Drug-resistant tuberculosis (TB) is estimated to cause 13% of all antimicrobial resistance-attributable deaths worldwide and is driven by both ongoing resistance acquisition and person-to-person transmission. Poor outcomes are exacerbated by late diagnosis and inadequate access to effective treatment. Advances in rapid molecular testing have recently improved the diagnosis of TB and drug resistance. Next-generation sequencing of Mycobacterium tuberculosis has increased our understanding of genetic resistance mechanisms and can now detect mutations associated with resistance phenotypes. All-oral, shorter drug regimens that can achieve high cure rates of drug-resistant TB within 6-9 months are now available and recommended but have yet to be scaled to global clinical use. Promising regimens for the prevention of drug-resistant TB among high-risk contacts are supported by early clinical trial data but final results are pending. A person-centred approach is crucial in managing drug-resistant TB to reduce the risk of poor treatment outcomes, side effects, stigma and mental health burden associated with the diagnosis. In this Review, we describe current surveillance of drug-resistant TB and the causes, risk factors and determinants of drug resistance as well as the stigma and mental health considerations associated with it. We discuss recent advances in diagnostics and drug-susceptibility testing and outline the progress in developing better treatment and preventive therapies. Drug-resistant tuberculosis (TB) is estimated to cause 13% of all antimicrobial resistance-attributable deaths worldwide and is driven by both ongoing resistance acquisition and person-to-person transmission. Poor outcomes are exacerbated by late diagnosis and inadequate access to effective treatment. Advances in rapid molecular testing have recently improved the diagnosis of TB and drug resistance. Next-generation sequencing of Mycobacterium tuberculosis has increased our understanding of genetic resistance mechanisms and can now detect mutations associated with resistance phenotypes. All-oral, shorter drug regimens that can achieve high cure rates of drug-resistant TB within 6-9 months are now available and recommended but have yet to be scaled to global clinical use. Promising regimens for the prevention of drug-resistant TB among high-risk contacts are supported by early clinical trial data but final results are pending. A person-centred approach is crucial in managing drug-resistant TB to reduce the risk of poor treatment outcomes, side effects, stigma and mental health burden associated with the diagnosis. In this Review, we describe current surveillance of drug-resistant TB and the causes, risk factors and determinants of drug resistance as well as the stigma and mental health considerations associated with it. We discuss recent advances in diagnostics and drug-susceptibility testing and outline the progress in developing better treatment and preventive therapies.Drug-resistant tuberculosis (TB) is estimated to cause 13% of all antimicrobial resistance-attributable deaths worldwide and is driven by both ongoing resistance acquisition and person-to-person transmission. Poor outcomes are exacerbated by late diagnosis and inadequate access to effective treatment. Advances in rapid molecular testing have recently improved the diagnosis of TB and drug resistance. Next-generation sequencing of Mycobacterium tuberculosis has increased our understanding of genetic resistance mechanisms and can now detect mutations associated with resistance phenotypes. All-oral, shorter drug regimens that can achieve high cure rates of drug-resistant TB within 6-9 months are now available and recommended but have yet to be scaled to global clinical use. Promising regimens for the prevention of drug-resistant TB among high-risk contacts are supported by early clinical trial data but final results are pending. A person-centred approach is crucial in managing drug-resistant TB to reduce the risk of poor treatment outcomes, side effects, stigma and mental health burden associated with the diagnosis. In this Review, we describe current surveillance of drug-resistant TB and the causes, risk factors and determinants of drug resistance as well as the stigma and mental health considerations associated with it. We discuss recent advances in diagnostics and drug-susceptibility testing and outline the progress in developing better treatment and preventive therapies. Drug-resistant tuberculosis (TB) is estimated to cause 13% of all antimicrobial resistance-attributable deaths worldwide and is driven by both ongoing resistance acquisition and person-to-person transmission. Poor outcomes are exacerbated by late diagnosis and inadequate access to effective treatment. Advances in rapid molecular testing have recently improved the diagnosis of TB and drug resistance. Next-generation sequencing of Mycobacterium tuberculosis has increased our understanding of genetic resistance mechanisms and can now detect mutations associated with resistance phenotypes. All-oral, shorter drug regimens that can achieve high cure rates of drug-resistant TB within 6–9 months are now available and recommended but have yet to be scaled to global clinical use. Promising regimens for the prevention of drug-resistant TB among high-risk contacts are supported by early clinical trial data but final results are pending. A person-centred approach is crucial in managing drug-resistant TB to reduce the risk of poor treatment outcomes, side effects, stigma and mental health burden associated with the diagnosis. In this Review, we describe current surveillance of drug-resistant TB and the causes, risk factors and determinants of drug resistance as well as the stigma and mental health considerations associated with it. We discuss recent advances in diagnostics and drug-susceptibility testing and outline the progress in developing better treatment and preventive therapies. In this Review, Pai and colleagues examine the global landscape of drug-resistant tuberculosis, exploring its epidemiology, causes, risk factors, stigma and associated mental health burden as well as discussing the most recent developments in diagnostics, treatment and preventive regimens. |
| Author | Rodrigues, Camilla Vambe, Debrah Pai, Madhukar Abd El Aziz, Mirna S. Enkh-Amgalan, Handaa Furin, Jennifer Farhat, Maha Denkinger, Claudia M. Ghanem, Marwan Cox, Helen Ugarte-Gil, Cesar |
| Author_xml | – sequence: 1 givenname: Maha orcidid: 0000-0002-3871-5760 surname: Farhat fullname: Farhat, Maha organization: Department of Biomedical Informatics, Harvard Medical School, Division of Pulmonary and Critical Care Medicine, Massachusetts General Hospital – sequence: 2 givenname: Helen surname: Cox fullname: Cox, Helen organization: Institute of Infectious Disease and Molecular Medicine, Wellcome Centre for Infectious Disease Research and Division of Medical Microbiology, University of Cape Town – sequence: 3 givenname: Marwan surname: Ghanem fullname: Ghanem, Marwan organization: Department of Biomedical Informatics, Harvard Medical School – sequence: 4 givenname: Claudia M. surname: Denkinger fullname: Denkinger, Claudia M. organization: Division of Infectious Disease and Tropical Medicine, Heidelberg University Hospital, German Center for Infection Research (DZIF), partner site Heidelberg University Hospital – sequence: 5 givenname: Camilla surname: Rodrigues fullname: Rodrigues, Camilla organization: P.D. Hinduja Hospital and Medical Research Centre – sequence: 6 givenname: Mirna S. surname: Abd El Aziz fullname: Abd El Aziz, Mirna S. organization: Division of Infectious Disease and Tropical Medicine, Heidelberg University Hospital – sequence: 7 givenname: Handaa surname: Enkh-Amgalan fullname: Enkh-Amgalan, Handaa – sequence: 8 givenname: Debrah surname: Vambe fullname: Vambe, Debrah organization: National TB Control Programme – sequence: 9 givenname: Cesar surname: Ugarte-Gil fullname: Ugarte-Gil, Cesar organization: School of Public and Population Health, University of Texas Medical Branch – sequence: 10 givenname: Jennifer surname: Furin fullname: Furin, Jennifer organization: Department of Global Health and Social Medicine, Harvard Medical School – sequence: 11 givenname: Madhukar orcidid: 0000-0003-3667-4536 surname: Pai fullname: Pai, Madhukar email: madhukar.pai@mcgill.ca organization: McGill International TB Centre, McGill University |
| BackLink | https://www.ncbi.nlm.nih.gov/pubmed/38519618$$D View this record in MEDLINE/PubMed |
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| Cites_doi | 10.1186/s13073-019-0660-8 10.1146/annurev-pharmtox-061008-103123 10.1371/journal.pmed.1003008 10.1016/S0140-6736(21)02724-0 10.1016/S1473-3099(21)00470-9 10.1186/s12879-020-05157-6 10.1056/NEJMoa1800474 10.1093/cid/cix128 10.1016/S0140-6736(06)69573-1 10.1056/NEJMoa0907847 10.1136/bmjgh-2019-002280 10.1183/13993003.01075-2016 10.1038/ng.2743 10.1183/09031936.05.00111304 10.1093/cid/ciac528 10.1016/S1473-3099(20)30732-5 10.1371/journal.pone.0152933 10.1038/s41564-023-01365-3 10.1038/s41564-022-01130-y 10.1038/s41467-022-31236-0 10.1093/cid/ciy727 10.1073/pnas.0907925106 10.3389/fmicb.2019.00216 10.1164/rccm.202012-4333OC 10.1128/JCM.00009-18 10.1016/S2213-2600(15)00458-0 10.1016/S0140-6736(19)30308-3 10.1128/jcm.01086-22 10.1371/journal.pmed.1002653 10.1136/bmjgh-2017-000333 10.3389/fpubh.2023.1117101 10.1056/NEJMc1413930 10.1183/13993003.01354-2017 10.4269/ajtmh.15-0166 10.1371/journal.pone.0146642 10.1016/S2213-2600(17)30079-6 10.1136/bmj.k2738 10.1186/s13063-021-05491-3 10.1038/ng.2878 10.1164/rccm.201908-1576OC 10.1073/pnas.2301394120 10.1093/cid/ciz491 10.1371/journal.pone.0171800 10.1128/JCM.00666-18 10.1016/S2213-2600(15)00466-X 10.1183/13993003.01786-2021 10.1093/jac/dkaa136 10.1183/13993003.00543-2016 10.1128/JCM.02483-16 10.1016/S1473-3099(21)00452-7 10.5588/ijtld.23.0031 10.1164/rccm.201909-1874ST 10.4103/ijmr.IJMR_2557_19 10.1080/17441692.2020.1855460 10.1099/mic.0.26902-0 10.1128/AAC.01164-21 10.5588/ijtld.16.0788 10.1136/bmjopen-2020-043050 10.1513/AnnalsATS.201509-632PS 10.1038/s41467-022-29832-1 10.1128/JCM.02168-20 10.1186/s13073-022-01054-6 10.1128/AAC.00905-13 10.1371/journal.pone.0226507 10.1016/S2214-109X(15)00100-X 10.1038/nm0696-662 10.1093/jac/dkq120 10.1016/S2666-5247(21)00175-0 10.1186/s13104-018-3789-4 10.1093/femsre/fux011 10.1016/S1473-3099(16)30418-2 10.1371/journal.pone.0197737 10.1101/2021.09.23.21263991 10.5588/ijtld.20.0952 10.1093/infdis/jir658 10.1086/513945 10.1183/13993003.01528-2018 10.1186/s13063-018-3070-0 10.1146/annurev.pharmtox.45.120403.100120 10.1371/journal.ppat.1010705 10.1183/13993003.00526-2021 10.1128/AAC.01948-20 10.1183/09031936.00111812 10.1016/S2666-5247(20)30060-4 10.1056/NEJMoa2119430 10.1016/S0140-6736(22)01883-9 10.1073/pnas.93.23.13212 10.1016/j.jns.2020.116719 10.1136/bmjgh-2022-009657 10.1016/S2666-5247(20)30195-6 10.1371/journal.pmed.1002754 10.1111/j.1365-2958.2008.06365.x 10.1371/journal.pmed.1002149 10.1136/bmjgh-2017-000515 10.1038/s41598-020-73759-w 10.1016/S2213-2600(18)30235-2 10.1371/journal.pone.0087262 10.1186/s12879-017-2389-6 10.1186/s12879-016-1920-5 10.5588/pha.18.0047 10.1038/ng.3767 10.1371/journal.pone.0147397 10.1093/bioinformatics/btx801 10.1371/journal.pmed.1001880 10.1128/JCM.01885-20 10.1136/bmjgh-2020-003438 10.3390/pathogens11101189 10.1016/j.cmi.2017.05.026 10.1183/13993003.00724-2015 10.3390/tropicalmed8020104 10.1016/S0140-6736(22)02078-5 10.1016/j.ebiom.2019.04.016 10.1016/S1473-3099(17)30691-6 10.1186/s13073-021-00953-4 10.1128/AAC.49.2.708-720.2005 10.1136/bmjopen-2019-033945 10.2471/BLT.12.104588 10.1128/AAC.01871-17 10.1128/AAC.00320-06 10.1038/s41564-018-0218-3 10.1128/JCM.02775-15 10.3390/ph16060784 10.1371/journal.pone.0048599 10.1038/s41598-019-48401-z 10.1111/mmi.12476 10.1164/rccm.200206-626OC 10.1093/infdis/jix335 10.3389/fpsyt.2022.869647 10.1371/journal.pone.0071867 10.1128/AAC.02191-12 10.1136/bmjgh-2021-005250 10.1073/pnas.0505446102 10.21037/atm.2019.07.28 10.1093/jac/dkx506 10.1056/NEJMoa2104535 10.1038/s41579-019-0218-1 10.1371/journal.pone.0015735 10.1183/13993003.00621-2021 10.1056/NEJMoa2105470 10.1128/JCM.00646-21 10.1016/j.dialog.2023.100115 10.1128/JCM.00686-18 10.1016/j.jinf.2018.10.004 10.1073/pnas.1907631116 10.3389/fphar.2022.955050 10.1186/s13073-022-01076-0 10.1016/S0140-6736(13)62073-5 10.2807/1560-7917.ES.2019.24.12.1800392 10.1016/S1473-3099(18)30222-6 10.1016/S1473-3099(12)70277-3 10.1038/s41467-019-10110-6 10.1186/s13063-022-06793-w 10.1074/jbc.M505727200 10.1093/jac/dkt358 10.1016/S1473-3099(16)30407-8 10.1093/cid/cir406 10.1136/bmj.l5894 10.1016/S0140-6736(18)31644-1 10.1128/jcm.02362-21 10.1038/s41467-023-44325-5 10.1016/S2666-5247(21)00144-0 10.1080/00365540152029954 10.1183/13993003.00982-2019 10.1136/thoraxjnl-2018-211616 10.5588/pha.22.0041 10.1128/AAC.01063-06 10.1128/JCM.00486-15 10.1016/S2352-4642(18)30068-3 10.1086/605559 10.1128/spectrum.03991-22 10.1016/S1473-3099(21)00811-2 10.1164/rccm.202107-1779OC 10.1016/S2214-109X(18)30458-3 10.1183/13993003.00246-2018 10.1016/S0140-6736(95)91090-5 10.1164/rccm.201510-2091OC 10.1093/molbev/msad131 10.1164/rccm.202304-0670VP 10.1056/NEJMoa2117166 10.1093/cid/cis353 10.1038/s41598-017-17705-3 10.1016/j.chembiol.2016.05.011 10.1186/s13756-021-00975-y 10.3201/eid1710.110105 10.1016/S1473-3099(19)30307-X 10.1093/jacamr/dlac029 10.1016/j.ijmm.2008.07.001 10.1128/AAC.00092-19 10.1126/science.1167498 10.1183/13993003.00626-2020 10.1038/s41591-021-01417-3 10.1111/j.1365-3156.2009.02316.x 10.1016/j.ijid.2013.06.006 10.1016/j.ebiom.2020.102747 10.1038/s41467-023-37719-y 10.1155/2021/8817442 10.1080/17441692.2014.934266 10.1056/NEJMc2103049 10.1016/S2214-109X(22)00113-9 10.1128/JCM.02314-20 10.5588/ijtld.17.0357 10.1021/jacs.6b12541 10.1056/NEJMoa1901814 10.1016/j.jgar.2023.05.001 10.1038/s41467-020-15516-1 10.7554/eLife.61805 10.1186/s12879-021-05884-4 10.1165/rcmb.2019-0178LE 10.1097/PAT.0000000000000235 10.1093/jac/dkz048 10.1016/S2666-5247(21)00301-3 10.1371/journal.pone.0217219 10.1126/science.abq2787 10.1101/gr.128678.111 10.1016/S0140-6736(75)91426-9 10.1101/2022.01.04.22268645 |
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| References | Van Rie (CR192) 2022; 23 Houben, Glynn (CR87) 2009; 14 Gan, Ng, Ngeow (CR175) 2023; 16 Goig (CR191) 2020; 1 Subbaraman, Jhaveri, Nathavitharana (CR32) 2020; 19 Cao (CR166) 2021; 59 Gopal (CR268) 2020; 11 CR159 Cohen (CR6) 2019; 74 Mallick, Nair, Abbew, Van Deun, Decroo (CR48) 2022; 4 Mailaender (CR109) 2004; 150 Theron (CR160) 2014; 383 Dean (CR31) 2020; 17 CR153 Dippenaar (CR180) 2022; 60 Maugans (CR223) 2023; 27 Oga-Omenka (CR145) 2020; 5 (CR176) 2018; 379 Thomas (CR250) 2016; 11 Cox (CR195) 2022; 60 Peto, Pratt, Harrington, LoBue, Armstrong (CR1) 2009; 49 CR172 Nathavitharana (CR169) 2017; 49 Zifodya (CR156) 2021; 2021 Cohen (CR54) 2015; 12 Zhang (CR8) 2005; 45 Subbaraman (CR35) 2016; 13 Ektefaie, Dixit, Freschi, Farhat (CR56) 2021; 2 Vilchèze (CR265) 2005; 49 Mahomed, Mlisana, Cele, Naidoo (CR186) 2020; 20 Pradhan (CR243) 2022; 13 Fox (CR237) 2020; 10 Yoon (CR161) 2012; 7 Oliveira (CR80) 2020; 10 Chen (CR129) 2019; 43 Churchyard (CR163) 2015; 3 An, Lin, Yang, Wang, Wang (CR174) 2023; 34 Kerubo, Amukoye, Niemann, Kariuki (CR79) 2016; 16 Engelthaler (CR141) 2019; 61 Guglielmetti (CR218) 2021; 22 Nahid (CR273) 2019; 200 Yu (CR149) 2023; 61 Ismail (CR30) 2018; 18 Becerra (CR60) 2019; 367 Paleckyte, Dissanayake, Mpagama, Lipman, McHugh (CR83) 2021; 10 Soboka (CR98) 2021; 11 De Vos (CR167) 2021; 59 Daniels (CR37) 2017; 2 CR152 Pasipanodya, Srivastava, Gumbo (CR65) 2012; 55 Rifat (CR256) 2020; 65 CR271 Penn-Nicholson (CR165) 2022; 22 Ndjeka (CR203) 2022; 22 Safi (CR258) 2013; 45 CR148 Vashakidze (CR73) 2009; 13 Farhat (CR124) 2019; 10 O’Donnell (CR95) 2011; 17 CR142 CR143 Sommerland (CR248) 2017; 21 Madsen (CR111) 2005; 280 Ng (CR182) 2018; 56 Dookie, Rambaran, Padayatchi, Mahomed, Naidoo (CR52) 2018; 73 CR240 McQuaid, Horton, Dean, Knight, White (CR94) 2020; 56 CR232 CR233 CR231 Ahmad, Ahuja, Akkerman (CR18) 2018; 392 CR238 Pym (CR200) 2016; 47 CR239 Kadura (CR120) 2020; 75 Susanto (CR246) 2023; 2 Mekonnen, Azagew (CR99) 2018; 11 Kim (CR147) 2005; 25 Ismail (CR173) 2021; 2 Huang (CR235) 2020; 202 Ndjeka (CR202) 2018; 52 Farhat (CR272) 2019; 74 Murray (CR23) 2022; 399 Urrego (CR78) 2015; 93 Plinke (CR257) 2010; 65 Miotto (CR255) 2017; 50 Skrahina (CR77) 2013; 91 Kwong, McCallum, Sintchenko, Howden (CR196) 2015; 47 Brown (CR189) 2015; 53 Kendall, Fofana, Dowdy (CR58) 2015; 3 Gomathi (CR158) 2020; 152 Jenkins (CR81) 2013; 42 Cox (CR70) 2021; 2 Casali (CR102) 2012; 22 CR14 Daftary, Frick, Venkatesan, Pai (CR242) 2017; 2 Sharling, Marks, Goodman, Chorba, Mase (CR29) 2019; 70 CR12 CR214 CR10 CR212 Furin, Cox, Pai (CR230) 2019; 393 CR213 Behr, Edelstein, Ramakrishnan (CR92) 2018; 362 CR210 CR211 Escombe (CR84) 2010; 14 Lomtadze (CR90) 2009; 13 Lee (CR91) 2020; 20 CR219 CR216 CR217 Furin, Tommasi, Garcia-Prats (CR227) 2018; 2 Sibandze (CR193) 2022; 14 Demers (CR42) 2021; 21 Reeves (CR266) 2013; 57 Jiang (CR55) 2023; 11 Zhao (CR204) 2019; 68 Yee (CR15) 2003; 167 Gegia, Winters, Benedetti, Soolingen, Menzies (CR229) 2017; 17 Pankhurst (CR177) 2016; 4 CR27 CR26 Seddon (CR236) 2018; 19 Stagg (CR19) 2019; 54 CR25 Wang (CR71) 2023; 11 Li (CR106) 2022; 7 Wong (CR270) 2013; 57 CR22 CR21 Yang (CR131) 2018; 34 CR226 CR20 CR221 Villegas (CR28) 2016; 11 CR101 CR222 CR220 Grant (CR260) 2016; 23 Hang (CR72) 2013; 8 Willby (CR171) 2018; 62 Green (CR130) 2022; 13 Spitaleri, Ghodousi, Miotto, Cirillo (CR127) 2019; 7 Schnippel (CR201) 2018; 6 Boehme (CR11) 2010; 363 McKay, Castellanos, Ebell, Whalen, Handel (CR67) 2019; 14 Nyang’wa (CR198) 2022; 387 Dheda (CR86) 2017; 5 Patankar (CR224) 2023; 208 As’hab, Keliat, Wardani (CR249) 2022; 11 Loiseau (CR104) 2023; 14 Udwadia, Furin (CR251) 2019; 16 El Halabi (CR62) 2021; 21 Gygli (CR103) 2021; 27 Migliori (CR36) 2021; 58 Jacobson (CR144) 2017; 64 Conradie (CR197) 2020; 382 Walker (CR125) 2022; 3 Azimi (CR46) 2022; 13 Mesfin (CR75) 2018; 13 Vargas (CR139) 2021; 10 Zaunbrecher, Sikes, Metchock, Shinnick, Posey (CR254) 2009; 106 Farhat (CR118) 2016; 194 Sanchez-Padilla (CR181) 2015; 372 CR43 Torrea (CR151) 2019; 9 Cohen, Manson, Desjardins, Abeel, Earl (CR5) 2019; 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91 Morris (CR108) 2005; 102 Doyle (CR190) 2018; 56 Iyer (CR194) 2023; 13 Ghodousi (CR126) 2019; 63 Andersson, Nicoloff, Hjort (CR138) 2019; 17 Wang, Cassidy, Sacchettini (CR112) 2006; 50 Dorman (CR154) 2018; 18 Esmail (CR206) 2022; 205 CR179 Srivastava, Ayyagari, Dhole, Nyati, Dwivedi (CR259) 2009; 299 Meaza (CR168) 2017; 17 CR178 Tagliani (CR184) 2017; 7 Turkova (CR225) 2022; 386 Liu (CR267) 2019; 10 Chambers, Kocagoz, Sipit, Turner, Hopewell (CR113) 1998; 26 Naidoo (CR34) 2017; 216 Boffa (CR39) 2021; 6 Odone (CR63) 2016; 11 Donald, Sirge (CR114) 2001; 33 Pradipta, Forsman, Bruchfeld, Hak, Alffenaar (CR89) 2018; 77 Goodall (CR207) 2022; 400 Yang (CR59) 2017; 17 Chesov (CR47) 2022; 59 Kherabi, Tunesi, Kay, Guglielmetti (CR234) 2022; 11 Safi (CR133) 2019; 116 Padmapriyadarsini (CR199) 2022; 76 Daniels, Kwan, Pai (CR38) 2019; 16 Zhang, Dhandayuthapani, Deretic (CR263) 1996; 93 Omar, Ismail, Ndjeka, Kaniga, Ismail (CR44) 2022; 386 Ismail (CR45) 2022; 22 Jenkins, Yuen (CR49) 2018; 22 Green (CR122) 2023; 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| References_xml | – volume: 11 year: 2019 ident: CR5 article-title: Deciphering drug resistance in using whole-genome sequencing: progress, promise, and challenges publication-title: Genome Med. doi: 10.1186/s13073-019-0660-8 – ident: CR22 – volume: 49 start-page: 427 year: 2009 end-page: 453 ident: CR107 article-title: Mycobacterial subversion of chemotherapeutic reagents and host defense tactics: challenges in tuberculosis drug development publication-title: Annu. Rev. Pharmacol. Toxicol. doi: 10.1146/annurev-pharmtox-061008-103123 – volume: 17 year: 2020 ident: CR31 article-title: Prevalence and genetic profiles of isoniazid resistance in tuberculosis patients: a multicountry analysis of cross-sectional data publication-title: PLoS Med. doi: 10.1371/journal.pmed.1003008 – volume: 399 start-page: 629 year: 2022 end-page: 655 ident: CR23 article-title: Global burden of bacterial antimicrobial resistance in 2019: a systematic analysis publication-title: Lancet doi: 10.1016/S0140-6736(21)02724-0 – volume: 22 start-page: 496 year: 2022 end-page: 506 ident: CR45 article-title: Assessment of epidemiological and genetic characteristics and clinical outcomes of resistance to bedaquiline in patients treated for rifampicin-resistant tuberculosis: a cross-sectional and longitudinal study publication-title: Lancet Infect. Dis. doi: 10.1016/S1473-3099(21)00470-9 – volume: 20 year: 2020 ident: CR91 article-title: Age-stratified anti-tuberculosis drug resistance profiles in South Korea: a multicenter retrospective study publication-title: BMC Infect. Dis. doi: 10.1186/s12879-020-05157-6 – volume: 379 start-page: 1403 year: 2018 end-page: 1415 ident: CR176 article-title: Prediction of susceptibility to first-line tuberculosis drugs by DNA sequencing publication-title: N. Engl. J. Med. doi: 10.1056/NEJMoa1800474 – volume: 64 start-page: 1502 year: 2017 end-page: 1508 ident: CR144 article-title: Implications of failure to routinely diagnose resistance to second-line drugs in patients with rifampicin-resistant tuberculosis on Xpert MTB/RIF: a multisite observational study publication-title: Clin. Infect. Dis. doi: 10.1093/cid/cix128 – volume: 368 start-page: 1575 year: 2006 end-page: 1580 ident: CR96 article-title: Extensively drug-resistant tuberculosis as a cause of death in patients co-infected with tuberculosis and HIV in a rural area of South Africa publication-title: Lancet doi: 10.1016/S0140-6736(06)69573-1 – volume: 363 start-page: 1005 year: 2010 end-page: 1015 ident: CR11 article-title: Rapid molecular detection of tuberculosis and rifampin resistance publication-title: N. Engl. J. Med. doi: 10.1056/NEJMoa0907847 – volume: 5 year: 2020 ident: CR145 article-title: Factors influencing diagnosis and treatment initiation for multidrug-resistant/rifampicin-resistant tuberculosis in six sub-Saharan African countries: a mixed-methods systematic review publication-title: BMJ Glob. Health doi: 10.1136/bmjgh-2019-002280 – volume: 49 start-page: 1601075 year: 2017 ident: CR169 article-title: Accuracy of line probe assays for the diagnosis of pulmonary and multidrug-resistant tuberculosis: a systematic review and meta-analysis publication-title: Eur. Respir. J. doi: 10.1183/13993003.01075-2016 – volume: 45 start-page: 1190 year: 2013 end-page: 1197 ident: CR258 article-title: Evolution of high-level ethambutol-resistant tuberculosis through interacting mutations in decaprenylphosphoryl-β-D-arabinose biosynthetic and utilization pathway genes publication-title: Nat. Genet. doi: 10.1038/ng.2743 – volume: 25 start-page: 564 year: 2005 end-page: 569 ident: CR147 article-title: Drug-susceptibility testing in tuberculosis: methods and reliability of results publication-title: Eur. Respir. J. doi: 10.1183/09031936.05.00111304 – volume: 76 start-page: e938 year: 2022 end-page: e946 ident: CR199 article-title: Bedaquiline, delamanid, linezolid and clofazimine for treatment of pre-extensively drug-resistant tuberculosis publication-title: Clin. Infect. Dis. doi: 10.1093/cid/ciac528 – volume: 21 start-page: 1175 year: 2021 end-page: 1183 ident: CR62 article-title: Measuring health-care delays among privately insured patients with tuberculosis in the USA: an observational cohort study publication-title: Lancet Infect. Dis. doi: 10.1016/S1473-3099(20)30732-5 – volume: 11 year: 2016 ident: CR28 article-title: Prevalence, risk factors, and treatment outcomes of isoniazid- and rifampicin-mono-resistant pulmonary tuberculosis in Lima, Peru publication-title: PLoS ONE doi: 10.1371/journal.pone.0152933 – ident: CR178 – volume: 8 start-page: 756 year: 2023 end-page: 759 ident: CR252 article-title: Transforming tuberculosis diagnosis publication-title: Nat. Microbiol. doi: 10.1038/s41564-023-01365-3 – volume: 7 start-page: 766 year: 2022 end-page: 779 ident: CR106 article-title: CRISPRi chemical genetics and comparative genomics identify genes mediating drug potency in publication-title: Nat. Microbiol. doi: 10.1038/s41564-022-01130-y – volume: 13 year: 2022 ident: CR130 article-title: A convolutional neural network highlights mutations relevant to antimicrobial resistance in publication-title: Nat. Commun. doi: 10.1038/s41467-022-31236-0 – volume: 68 start-page: 1522 year: 2019 end-page: 1529 ident: CR204 article-title: Improved treatment outcomes with bedaquiline when substituted for second-line injectable agents in multidrug-resistant tuberculosis: a retrospective cohort study publication-title: Clin. Infect. Dis. doi: 10.1093/cid/ciy727 – volume: 106 start-page: 20004 year: 2009 end-page: 20009 ident: CR254 article-title: Overexpression of the chromosomally encoded aminoglycoside acetyltransferase eis confers kanamycin resistance in publication-title: Proc. Natl Acad. Sci. USA doi: 10.1073/pnas.0907925106 – volume: 10 start-page: 216 year: 2019 ident: CR267 article-title: Mutations in efflux pump Rv1258c (tap) cause resistance to pyrazinamide, isoniazid, and streptomycin in publication-title: Front. Microbiol. doi: 10.3389/fmicb.2019.00216 – volume: 205 start-page: 233 year: 2022 end-page: 241 ident: CR61 article-title: Tuberculosis pathways to care and transmission of multidrug resistance in India publication-title: Am. J. Respir. Crit. Care Med. doi: 10.1164/rccm.202012-4333OC – volume: 56 start-page: e00009-18 year: 2018 ident: CR183 article-title: Next-generation sequencing for characterizing drug resistance-conferring genes from clinical isolates in the Ukraine publication-title: J. Clin. Microbiol. doi: 10.1128/JCM.00009-18 – ident: CR213 – volume: 3 start-page: 963 year: 2015 end-page: 972 ident: CR58 article-title: Burden of transmitted multidrug resistance in epidemics of tuberculosis: a transmission modelling analysis publication-title: Lancet Respir. Med. doi: 10.1016/S2213-2600(15)00458-0 – ident: CR179 – volume: 393 start-page: 1642 year: 2019 end-page: 1656 ident: CR230 article-title: Tuberculosis publication-title: Lancet doi: 10.1016/S0140-6736(19)30308-3 – volume: 61 start-page: e01086-22 year: 2023 ident: CR149 article-title: Performance evaluation of the BACTEC MGIT 960 system for rifampin drug-susceptibility testing of using the current WHO critical concentration publication-title: J. Clin. Microbiol. doi: 10.1128/jcm.01086-22 – volume: 15 year: 2018 ident: CR40 article-title: Variations in the quality of tuberculosis care in urban India: a cross-sectional, standardized patient study in two cities publication-title: PLoS Med. doi: 10.1371/journal.pmed.1002653 – ident: CR10 – volume: 2 year: 2017 ident: CR37 article-title: Use of standardised patients to assess quality of healthcare in Nairobi, Kenya: a pilot, cross-sectional study with international comparisons publication-title: BMJ Glob. Health doi: 10.1136/bmjgh-2017-000333 – ident: CR27 – volume: 11 start-page: 1117101 year: 2023 ident: CR71 article-title: Epidemiological characteristics and risk factors of multidrug-resistant tuberculosis in Luoyang, China publication-title: Front. Public Health doi: 10.3389/fpubh.2023.1117101 – volume: 372 start-page: 1181 year: 2015 end-page: 1182 ident: CR181 article-title: Detection of drug-resistant tuberculosis by Xpert MTB/RIF in Swaziland publication-title: N. Engl. J. Med. doi: 10.1056/NEJMc1413930 – volume: 50 start-page: 1701354 year: 2017 ident: CR255 article-title: A standardised method for interpreting the association between mutations and phenotypic drug resistance in publication-title: Eur. Respir. J. doi: 10.1183/13993003.01354-2017 – volume: 93 start-page: 739 year: 2015 end-page: 746 ident: CR78 article-title: The impact of ventilation and early diagnosis on tuberculosis transmission in Brazilian prisons publication-title: Am. J. Trop. Med. Hyg. doi: 10.4269/ajtmh.15-0166 – volume: 11 year: 2016 ident: CR63 article-title: Acquired and transmitted multidrug resistant tuberculosis: the role of social determinants publication-title: PLoS ONE doi: 10.1371/journal.pone.0146642 – volume: 5 start-page: 291 year: 2017 end-page: 360 ident: CR86 article-title: The epidemiology, pathogenesis, transmission, diagnosis, and management of multidrug-resistant, extensively drug-resistant, and incurable tuberculosis publication-title: Lancet Respir. Med. doi: 10.1016/S2213-2600(17)30079-6 – volume: 362 start-page: k2738 year: 2018 ident: CR92 article-title: Revisiting the timetable of tuberculosis publication-title: BMJ doi: 10.1136/bmj.k2738 – volume: 22 year: 2021 ident: CR218 article-title: Evaluating newly approved drugs for multidrug-resistant tuberculosis (endTB): study protocol for an adaptive, multi-country randomized controlled trial publication-title: Trials doi: 10.1186/s13063-021-05491-3 – volume: 46 start-page: 279 year: 2014 end-page: 286 ident: CR53 article-title: Evolution and transmission of drug-resistant tuberculosis in a Russian population publication-title: Nat. Genet. doi: 10.1038/ng.2878 – volume: 202 start-page: 1159 year: 2020 end-page: 1168 ident: CR235 article-title: Isoniazid preventive therapy in contacts of multidrug-resistant tuberculosis publication-title: Am. J. Respir. Crit. Care Med. doi: 10.1164/rccm.201908-1576OC – volume: 120 year: 2023 ident: CR116 article-title: Phase variation as a major mechanism of adaptation in complex publication-title: Proc. Natl Acad. Sci. USA doi: 10.1073/pnas.2301394120 – volume: 70 start-page: 1596 year: 2019 end-page: 1605 ident: CR29 article-title: Rifampin-resistant tuberculosis in the United States, 1998-2014 publication-title: Clin. Infect. Dis. doi: 10.1093/cid/ciz491 – volume: 12 year: 2017 ident: CR82 article-title: Spatial patterns of multidrug resistant tuberculosis and relationships to socio-economic, demographic and household factors in northwest Ethiopia publication-title: PLoS ONE doi: 10.1371/journal.pone.0171800 – volume: 13 start-page: 68 year: 2009 end-page: 73 ident: CR90 article-title: Prevalence and risk factors for multidrug-resistant tuberculosis in the Republic of Georgia: a population-based study publication-title: Int. J. Tuberc. Lung Dis. – volume: 56 start-page: e00666 year: 2018 end-page: 18 ident: CR190 article-title: Direct whole-genome sequencing of sputum accurately identifies drug-resistant faster than MGIT culture sequencing publication-title: J. Clin. Microbiol. doi: 10.1128/JCM.00666-18 – volume: 4 start-page: 49 year: 2016 end-page: 58 ident: CR177 article-title: Rapid, comprehensive, and affordable mycobacterial diagnosis with whole-genome sequencing: a prospective study publication-title: Lancet Respir. Med. doi: 10.1016/S2213-2600(15)00466-X – volume: 58 start-page: 2101786 year: 2021 ident: CR36 article-title: Gauging the impact of the COVID-19 pandemic on tuberculosis services: a global study publication-title: Eur. Respir. J. doi: 10.1183/13993003.01786-2021 – volume: 75 start-page: 2031 year: 2020 end-page: 2043 ident: CR120 article-title: Systematic review of mutations associated with resistance to the new and repurposed drugs bedaquiline, clofazimine, linezolid, delamanid and pretomanid publication-title: J. Antimicrob. Chemother. doi: 10.1093/jac/dkaa136 – ident: CR148 – volume: 48 start-page: 516 year: 2016 end-page: 525 ident: CR155 article-title: Development, roll-out and impact of Xpert MTB/RIF for tuberculosis: what lessons have we learnt and how can we do better? publication-title: Eur. Respir. J. doi: 10.1183/13993003.00543-2016 – volume: 55 start-page: 1285 year: 2017 end-page: 1298 ident: CR188 article-title: Same-day diagnostic and surveillance data for ttuberculosis via whole-genome sequencing of direct respiratory samples publication-title: J. Clin. Microbiol. doi: 10.1128/JCM.02483-16 – volume: 22 start-page: 242 year: 2022 end-page: 249 ident: CR165 article-title: Detection of isoniazid, fluoroquinolone, ethionamide, amikacin, kanamycin, and capreomycin resistance by the Xpert MTB/XDR assay: a cross-sectional multicentre diagnostic accuracy study publication-title: Lancet Infect. Dis. doi: 10.1016/S1473-3099(21)00452-7 – volume: 27 start-page: 357 year: 2023 end-page: 366 ident: CR223 article-title: Best practices for the care of pregnant people living with TB publication-title: Int. J. Tuberc. Lung Dis. doi: 10.5588/ijtld.23.0031 – volume: 200 start-page: e93 year: 2019 end-page: e142 ident: CR273 article-title: Treatment of drug-resistant tuberculosis. An Official ATS/CDC/ERS/IDSA clinical practice guideline publication-title: Am. J. Respir. Crit. Care Med. doi: 10.1164/rccm.201909-1874ST – volume: 152 start-page: 482 year: 2020 end-page: 489 ident: CR158 article-title: Validation of an indigenous assay for rapid molecular detection of rifampicin resistance in presumptive multidrug-resistant pulmonary tuberculosis patients publication-title: Indian J. Med. Res. doi: 10.4103/ijmr.IJMR_2557_19 – volume: 17 start-page: 210 year: 2022 end-page: 222 ident: CR241 article-title: Behavioural barriers and perceived trade-offs to care-seeking for tuberculosis in the Philippines publication-title: Glob. Public Health doi: 10.1080/17441692.2020.1855460 – volume: 150 start-page: 853 year: 2004 end-page: 864 ident: CR109 article-title: The MspA porin promotes growth and increases antibiotic susceptibility of both and publication-title: Microbiology doi: 10.1099/mic.0.26902-0 – volume: 65 year: 2021 ident: CR117 article-title: Role of epistasis in amikacin, kanamycin, bedaquiline, and clofazimine resistance in complex publication-title: Antimicrob. Agents Chemother. doi: 10.1128/AAC.01164-21 – volume: 21 start-page: S81 year: 2017 end-page: S86 ident: CR248 article-title: Evidence-based interventions to reduce tuberculosis stigma: a systematic review publication-title: Int. J. Tuberc. Lung Dis. doi: 10.5588/ijtld.16.0788 – ident: CR219 – ident: CR220 – volume: 11 year: 2021 ident: CR98 article-title: Substance use disorders and adherence to antituberculosis medications in Southwest Ethiopia: a prospective cohort study publication-title: BMJ Open doi: 10.1136/bmjopen-2020-043050 – volume: 12 start-page: 1749 year: 2015 end-page: 1759 ident: CR16 article-title: Treatment of tuberculosis: a historical perspective publication-title: Ann. Am. Thorac. Soc. doi: 10.1513/AnnalsATS.201509-632PS – volume: 13 year: 2022 ident: CR136 article-title: CinA mediates multidrug tolerance in publication-title: Nat. Commun. doi: 10.1038/s41467-022-29832-1 – volume: 59 start-page: e02168-20 year: 2021 ident: CR167 article-title: Comparative analytical evaluation of four centralized platforms for the detection of complex and resistance to rifampicin and isoniazid publication-title: J. Clin. Microbiol. doi: 10.1128/JCM.02168-20 – ident: CR21 – volume: 14 year: 2022 ident: CR193 article-title: Rapid molecular diagnostics of tuberculosis resistance by targeted stool sequencing publication-title: Genome Med. doi: 10.1186/s13073-022-01054-6 – ident: CR208 – volume: 11 start-page: 2337 year: 2023 ident: CR253 article-title: The 1/4/6x24 campaign to cure tuberculosis quickly publication-title: Nat. Med. – volume: 14 start-page: 1120 year: 2010 end-page: 1126 ident: CR84 article-title: Tuberculosis transmission risk and infection control in a hospital emergency department in Lima, Peru publication-title: Int. J. Tuberc. Lung Dis. – ident: CR231 – volume: 57 start-page: 6311 year: 2013 end-page: 6318 ident: CR270 article-title: Functional role of methylation of G518 of the 16S rRNA 530 loop by GidB in publication-title: Antimicrob. Agents Chemother. doi: 10.1128/AAC.00905-13 – volume: 14 year: 2019 ident: CR100 article-title: Factors predictive of the success of tuberculosis treatment: a systematic review with meta-analysis publication-title: PLoS ONE doi: 10.1371/journal.pone.0226507 – volume: 3 start-page: 450 year: 2015 end-page: 457 ident: CR163 article-title: Xpert MTB/RIF versus sputum microscopy as the initial diagnostic test for tuberculosis: a cluster-randomised trial embedded in South African roll-out of Xpert MTB/RIF publication-title: Lancet Glob. Health doi: 10.1016/S2214-109X(15)00100-X – volume: 2 start-page: 662 year: 1996 end-page: 667 ident: CR269 article-title: Mutations in , a gene encoding pyrazinamidase/nicotinamidase, cause resistance to the antituberculous drug pyrazinamide in tubercle bacillus publication-title: Nat. Med. doi: 10.1038/nm0696-662 – volume: 65 start-page: 1359 year: 2010 end-page: 1367 ident: CR257 article-title: sequence variation among ethambutol-resistant isolates without mutation publication-title: J. Antimicrob. Chemother. doi: 10.1093/jac/dkq120 – volume: 16 start-page: 100109 year: 2019 ident: CR38 article-title: Lessons on the quality of tuberculosis diagnosis from standardized patients in China, India, Kenya, and South publication-title: Afr. J. Clin. Tuberc. Mycobact. Dis. – volume: 2 start-page: e604 year: 2021 end-page: e616 ident: CR173 article-title: Genetic variants and their association with phenotypic resistance to bedaquiline in : a systematic review and individual isolate data analysis publication-title: Lancet Microbe doi: 10.1016/S2666-5247(21)00175-0 – ident: CR214 – ident: CR26 – volume: 11 year: 2018 ident: CR99 article-title: Non-adherence to anti-tuberculosis treatment, reasons and associated factors among TB patients attending at Gondar town health centers, Northwest Ethiopia publication-title: BMC Res. Notes doi: 10.1186/s13104-018-3789-4 – volume: 41 start-page: 354 year: 2017 end-page: 373 ident: CR105 article-title: Antimicrobial resistance in : mechanistic and evolutionary perspectives publication-title: FEMS Microbiol. Rev. doi: 10.1093/femsre/fux011 – ident: CR143 – ident: CR232 – volume: 17 start-page: 275 year: 2017 end-page: 284 ident: CR59 article-title: Transmission of multidrug-resistant in Shanghai, China: a retrospective observational study using whole-genome sequencing and epidemiological investigation publication-title: Lancet Infect. Dis. doi: 10.1016/S1473-3099(16)30418-2 – ident: CR43 – volume: 13 year: 2018 ident: CR75 article-title: Drug-resistance patterns of strains and associated risk factors among multi drug-resistant tuberculosis suspected patients from Ethiopia publication-title: PLoS ONE doi: 10.1371/journal.pone.0197737 – ident: CR14 – ident: CR2 – ident: CR226 – year: 2021 ident: CR13 article-title: Estimation of country-specific tuberculosis antibiograms using genomic data. Preprint at publication-title: medRxiv doi: 10.1101/2021.09.23.21263991 – volume: 25 start-page: 461 year: 2021 end-page: 467 ident: CR244 article-title: Depression, stigma and quality of life in people with drug-susceptible TB and drug-resistant TB in Vietnam publication-title: Int. J. Tuberc. Lung Dis. doi: 10.5588/ijtld.20.0952 – volume: 204 start-page: 1951 year: 2011 end-page: 1959 ident: CR66 article-title: Multidrug-resistant tuberculosis not due to noncompliance but to between-patient pharmacokinetic variability publication-title: J. Infect. Dis. doi: 10.1093/infdis/jir658 – volume: 26 start-page: 874 year: 1998 end-page: 877 ident: CR113 article-title: Activity of amoxicillin/clavulanate in patients with tuberculosis publication-title: Clin. Infect. Dis. doi: 10.1086/513945 – volume: 52 start-page: 1801528 year: 2018 ident: CR202 article-title: High treatment success rate for multidrug-resistant and extensively drug-resistant tuberculosis using a bedaquiline-containing treatment regimen publication-title: Eur. Respir. J. doi: 10.1183/13993003.01528-2018 – volume: 19 year: 2018 ident: CR236 article-title: Levofloxacin versus placebo for the prevention of tuberculosis disease in child contacts of multidrug-resistant tuberculosis: study protocol for a phase-III cluster randomised controlled trial (TB-CHAMP) publication-title: Trials doi: 10.1186/s13063-018-3070-0 – volume: 45 start-page: 529 year: 2005 end-page: 564 ident: CR8 article-title: The magic bullets and tuberculosis drug targets publication-title: Annu. Rev. Pharmacol. Toxicol. doi: 10.1146/annurev.pharmtox.45.120403.100120 – volume: 18 year: 2022 ident: CR137 article-title: Loss of RNase J leads to multi-drug tolerance and accumulation of highly structured mRNA fragments in publication-title: PLoS Pathog. doi: 10.1371/journal.ppat.1010705 – volume: 58 start-page: 2100526 year: 2021 ident: CR157 article-title: A prospective multicentre diagnostic accuracy study for the Truenat tuberculosis assays publication-title: Eur. Respir. J. doi: 10.1183/13993003.00526-2021 – volume: 65 start-page: e01948 year: 2020 end-page: 20 ident: CR256 article-title: Mutations in (Rv2983) as a novel determinant of resistance to pretomanid and delamanid in publication-title: Antimicrob. Agents Chemother. doi: 10.1128/AAC.01948-20 – volume: 42 start-page: 1291 year: 2013 end-page: 1301 ident: CR81 article-title: Assessing spatial heterogeneity of multidrug-resistant tuberculosis in a high-burden country publication-title: Eur. Respir. J. doi: 10.1183/09031936.00111812 – volume: 1 start-page: e175 year: 2020 end-page: e183 ident: CR191 article-title: Whole-genome sequencing of directly from clinical samples for high-resolution genomic epidemiology and drug resistance surveillance: an observational study publication-title: Lancet Microbe doi: 10.1016/S2666-5247(20)30060-4 – volume: 387 start-page: 810 year: 2022 end-page: 823 ident: CR205 article-title: Bedaquiline–pretomanid–linezolid regimens for drug-resistant tuberculosis publication-title: N. Engl. J. Med. doi: 10.1056/NEJMoa2119430 – volume: 400 start-page: 1522 year: 2022 end-page: 1530 ident: CR215 article-title: 9 months of delamanid, linezolid, levofloxacin, and pyrazinamide versus conventional therapy for treatment of fluoroquinolone-sensitive multidrug-resistant tuberculosis (MDR-END): a multicentre, randomised, open-label phase 2/3 non-inferiority trial in South Korea publication-title: Lancet doi: 10.1016/S0140-6736(22)01883-9 – volume: 93 start-page: 13212 year: 1996 end-page: 13216 ident: CR263 article-title: Molecular basis for the exquisite sensitivity of to isoniazid publication-title: Proc. Natl Acad. Sci. USA doi: 10.1073/pnas.93.23.13212 – volume: 411 start-page: 116719 year: 2020 ident: CR97 article-title: Infectious diseases occurring in the context of substance use disorders: a concise review publication-title: J. Neurol. Sci. doi: 10.1016/j.jns.2020.116719 – volume: 7 start-page: 009657 year: 2022 ident: CR41 article-title: Tuberculosis diagnosis and management in the public versus private sector: a standardised patients study in Mumbai, India publication-title: BMJ Glob. Health doi: 10.1136/bmjgh-2022-009657 – ident: CR172 – volume: 2 start-page: e96 year: 2021 end-page: e104 ident: CR56 article-title: Globally diverse resistance acquisition: a retrospective geographical and temporal analysis of whole genome sequences publication-title: Lancet Microbe doi: 10.1016/S2666-5247(20)30195-6 – volume: 16 year: 2019 ident: CR33 article-title: Constructing care cascades for active tuberculosis: a strategy for program monitoring and identifying gaps in quality of care publication-title: PLoS Med. doi: 10.1371/journal.pmed.1002754 – volume: 69 start-page: 1316 year: 2008 end-page: 1329 ident: CR262 article-title: Mycothiol biosynthesis is essential for ethionamide susceptibility in publication-title: Mol. Microbiol. doi: 10.1111/j.1365-2958.2008.06365.x – volume: 13 year: 2016 ident: CR35 article-title: The tuberculosis cascade of care in India’s public sector: a systematic review and meta-analysis publication-title: PLoS Med. doi: 10.1371/journal.pmed.1002149 – ident: CR271 – volume: 2 year: 2017 ident: CR242 article-title: Fighting TB stigma: we need to apply lessons learnt from HIV activism publication-title: BMJ Glob. Health doi: 10.1136/bmjgh-2017-000515 – ident: CR7 – volume: 10 year: 2020 ident: CR80 article-title: Using Bayesian spatial models to map and to identify geographical hotspots of multidrug-resistant tuberculosis in Portugal between 2000 and 2016 publication-title: Sci. Rep. doi: 10.1038/s41598-020-73759-w – volume: 6 start-page: 699 year: 2018 end-page: 706 ident: CR201 article-title: Effect of bedaquiline on mortality in South African patients with drug-resistant tuberculosis: a retrospective cohort study publication-title: Lancet Respir. Med. doi: 10.1016/S2213-2600(18)30235-2 – volume: 9 year: 2014 ident: CR85 article-title: High tuberculosis prevalence in a South African prison: the need for routine tuberculosis screening publication-title: PLoS ONE doi: 10.1371/journal.pone.0087262 – volume: 17 year: 2017 ident: CR168 article-title: Evaluation of genotype MTBDRplus VER 2.0 line probe assay for the detection of MDR-TB in smear positive and negative sputum samples publication-title: BMC Infect. Dis. doi: 10.1186/s12879-017-2389-6 – ident: CR20 – volume: 16 year: 2016 ident: CR79 article-title: Drug susceptibility profiles of pulmonary isolates from patients in informal urban settlements in Nairobi, Kenya publication-title: BMC Infect. Dis. doi: 10.1186/s12879-016-1920-5 – volume: 9 start-page: 42 year: 2019 end-page: 48 ident: CR247 article-title: Depression and anxiety in patients with multidrug-resistant tuberculosis in Nepal: an observational study publication-title: Public Health Action doi: 10.5588/pha.18.0047 – ident: CR209 – volume: 49 start-page: 395 year: 2017 end-page: 402 ident: CR68 article-title: Genomic analysis of globally diverse strains provides insights into the emergence and spread of multidrug resistance publication-title: Nat. Genet. doi: 10.1038/ng.3767 – volume: 11 year: 2016 ident: CR250 article-title: Psycho-socio-economic issues challenging multidrug resistant tuberculosis patients: a systematic review publication-title: PLoS ONE doi: 10.1371/journal.pone.0147397 – volume: 34 start-page: 1666 year: 2018 end-page: 1671 ident: CR131 article-title: Machine learning for classifying tuberculosis drug-resistance from DNA sequencing data publication-title: Bioinformatics doi: 10.1093/bioinformatics/btx801 – volume: 12 year: 2015 ident: CR54 article-title: Evolution of extensively drug-resistant tuberculosis over four decades: whole genome sequencing and dating analysis of isolates from KwaZulu-Natal publication-title: PLoS Med. doi: 10.1371/journal.pmed.1001880 – volume: 59 start-page: e01885-20 year: 2021 ident: CR150 article-title: Low-level rifampin resistance and mutations in : an analysis of whole-genome sequencing and drug susceptibility test data in New York. publication-title: J. Clin. Microbiol. doi: 10.1128/JCM.01885-20 – volume: 5 year: 2020 ident: CR146 article-title: Differential yield of universal versus selective drug susceptibility testing of patients with tuberculosis in high-burden countries: a systematic review and meta-analysis publication-title: BMJ Glob. Health doi: 10.1136/bmjgh-2020-003438 – volume: 11 start-page: 1189 year: 2022 ident: CR234 article-title: Preventive therapy for contacts of drug-resistant tuberculosis publication-title: Pathogens doi: 10.3390/pathogens11101189 – volume: 20 start-page: 100176 year: 2020 ident: CR186 article-title: Discordant line probe genotypic testing vs culture-based drug susceptibility phenotypic testing in TB endemic KwaZulu-Natal: impact on bedside clinical decision making publication-title: J. Clin. Tuberc. Mycobact. Dis. – volume: 24 start-page: 60 year: 2018 end-page: 64 ident: CR170 article-title: Evaluation of a novel line probe assay to detect resistance to pyrazinamide, a key drug used for tuberculosis treatment publication-title: Clin. Microbiol. Infect. doi: 10.1016/j.cmi.2017.05.026 – volume: 47 start-page: 564 year: 2016 end-page: 574 ident: CR200 article-title: Bedaquiline in the treatment of multidrug- and extensively drug-resistant tuberculosis publication-title: Eur. Respir. J. doi: 10.1183/13993003.00724-2015 – volume: 8 start-page: 104 year: 2023 ident: CR93 article-title: Gender and drug-resistant tuberculosis in Nigeria publication-title: Trop. Med. Infect. Dis. doi: 10.3390/tropicalmed8020104 – volume: 400 start-page: 1858 year: 2022 end-page: 1868 ident: CR207 article-title: Evaluation of two short standardised regimens for the treatment of rifampicin-resistant tuberculosis (STREAM stage 2): an open-label, multicentre, randomised, non-inferiority trial publication-title: Lancet doi: 10.1016/S0140-6736(22)02078-5 – ident: CR238 – ident: CR25 – volume: 43 start-page: 356 year: 2019 end-page: 369 ident: CR129 article-title: Beyond multidrug resistance: leveraging rare variants with machine and statistical learning models in resistance prediction publication-title: EBioMedicine doi: 10.1016/j.ebiom.2019.04.016 – ident: CR101 – volume: 18 start-page: 76 year: 2018 end-page: 84 ident: CR154 article-title: Xpert MTB/RIF Ultra for detection of and rifampicin resistance: a prospective multicentre diagnostic accuracy study publication-title: Lancet Infect. Dis. doi: 10.1016/S1473-3099(17)30691-6 – volume: 13 year: 2021 ident: CR132 article-title: GenTB: a user-friendly genome-based predictor for tuberculosis resistance powered by machine learning publication-title: Genome Med. doi: 10.1186/s13073-021-00953-4 – volume: 49 start-page: 708 year: 2005 end-page: 720 ident: CR265 article-title: Altered NADH/NAD ratio mediates coresistance to isoniazid and ethionamide in mycobacteria publication-title: Antimicrob. Agents Chemother. doi: 10.1128/AAC.49.2.708-720.2005 – ident: CR210 – volume: 10 year: 2020 ident: CR237 article-title: Levofloxacin versus placebo for the treatment of latent tuberculosis among contacts of patients with multidrug-resistant tuberculosis (the VQUIN MDR trial): a protocol for a randomised controlled trial publication-title: BMJ Open doi: 10.1136/bmjopen-2019-033945 – volume: 91 start-page: 36 year: 2013 end-page: 45 ident: CR77 article-title: Multidrug-resistant tuberculosis in Belarus: the size of the problem and associated risk factors publication-title: Bull. World Health Organ. doi: 10.2471/BLT.12.104588 – volume: 62 start-page: e01871-17 year: 2018 ident: CR171 article-title: Detection of mutations by the Nipro Genoscholar PZA-TB II assay compared to conventional sequencing publication-title: Antimicrob. Agents Chemother. doi: 10.1128/AAC.01871-17 – volume: 50 start-page: 2762 year: 2006 end-page: 2771 ident: CR112 article-title: Crystal structure and activity studies of the beta-lactamase reveal its critical role in resistance to β-lactam antibiotics publication-title: Antimicrob. Agents Chemother. doi: 10.1128/AAC.00320-06 – volume: 3 start-page: 1032 year: 2018 end-page: 1042 ident: CR134 article-title: Clinically prevalent mutations in alter propionate metabolism and mediate multidrug tolerance publication-title: Nat. Microbiol. doi: 10.1038/s41564-018-0218-3 – ident: CR153 – ident: CR221 – volume: 13 start-page: 1320 year: 2009 end-page: 1330 ident: CR121 article-title: Mechanisms of drug resistance in publication-title: Int. J. Tuberc. Lung Dis. – volume: 54 start-page: 727 year: 2016 end-page: 733 ident: CR128 article-title: Gyrase mutations are associated with variable levels of fluoroquinolone resistance in publication-title: J. Clin. Microbiol. doi: 10.1128/JCM.02775-15 – volume: 16 start-page: 784 year: 2023 ident: CR175 article-title: Mechanisms of linezolid resistance in mycobacteria publication-title: Pharmaceuticals doi: 10.3390/ph16060784 – volume: 16 start-page: 100101 year: 2019 ident: CR251 article-title: Quality of drug-resistant tuberculosis care: gaps and solutions publication-title: J. Clin. Tuberc. Mycobact. Dis. – volume: 7 year: 2012 ident: CR161 article-title: Impact of Xpert MTB/RIF testing on tuberculosis management and outcomes in hospitalized patients in Uganda publication-title: PLoS ONE doi: 10.1371/journal.pone.0048599 – volume: 9 year: 2019 ident: CR151 article-title: Variable ability of rapid tests to detect mutations conferring phenotypically occult rifampicin resistance publication-title: Sci. Rep. doi: 10.1038/s41598-019-48401-z – volume: 91 start-page: 538 year: 2014 end-page: 547 ident: CR264 article-title: A silent mutation in mabA confers isoniazid resistance on publication-title: Mol. Microbiol. doi: 10.1111/mmi.12476 – volume: 7 start-page: 1 year: 2018 end-page: 4 ident: CR187 article-title: Diagnosis of rifampicin-resistant tuberculosis: discordant results by diagnostic methods publication-title: Afr. J. Lab. Med. – volume: 167 start-page: 1472 year: 2003 end-page: 1477 ident: CR15 article-title: Incidence of serious side effects from first-line antituberculosis drugs among patients treated for active tuberculosis publication-title: Am. J. Respir. Crit. Care Med. doi: 10.1164/rccm.200206-626OC – volume: 216 start-page: S702 year: 2017 end-page: S713 ident: CR34 article-title: The South African tuberculosis care cascade: estimated losses and methodological challenges publication-title: J. Infect. Dis. doi: 10.1093/infdis/jix335 – volume: 13 start-page: 869647 year: 2022 ident: CR243 article-title: Internalized and perceived stigma and depression in pulmonary tuberculosis: do they explain the relationship between drug sensitivity status and adherence? publication-title: Front. Psychiatry doi: 10.3389/fpsyt.2022.869647 – volume: 8 year: 2013 ident: CR72 article-title: Primary drug-resistant tuberculosis in Hanoi, Viet Nam: present status and risk factors publication-title: PLoS ONE doi: 10.1371/journal.pone.0071867 – volume: 57 start-page: 1857 year: 2013 end-page: 1865 ident: CR266 article-title: Aminoglycoside cross-resistance in due to mutations in the 5′ untranslated region of publication-title: Antimicrob. Agents Chemother. doi: 10.1128/AAC.02191-12 – volume: 6 year: 2021 ident: CR39 article-title: Quality of care for tuberculosis and HIV in the private health sector: a cross-sectional, standardised patient study in South Africa publication-title: BMJ Glob. Health doi: 10.1136/bmjgh-2021-005250 – volume: 102 start-page: 12200 year: 2005 end-page: 12205 ident: CR108 article-title: Ancestral antibiotic resistance in publication-title: Proc. Natl Acad. Sci. USA doi: 10.1073/pnas.0505446102 – volume: 7 start-page: S197 year: 2019 ident: CR127 article-title: Whole genome sequencing in publication-title: Ann. Transl. Med. doi: 10.21037/atm.2019.07.28 – volume: 73 start-page: 1138 year: 2018 end-page: 1151 ident: CR52 article-title: Evolution of drug resistance in : a review on the molecular determinants of resistance and implications for personalized care publication-title: J. Antimicrob. Chemother. doi: 10.1093/jac/dkx506 – volume: 386 start-page: 911 year: 2022 end-page: 922 ident: CR225 article-title: Shorter treatment for nonsevere tuberculosis in African and Indian children publication-title: N. Engl. J. Med. doi: 10.1056/NEJMoa2104535 – volume: 17 start-page: 479 year: 2019 end-page: 496 ident: CR138 article-title: Mechanisms and clinical relevance of bacterial heteroresistance publication-title: Nat. Rev. Microbiol. doi: 10.1038/s41579-019-0218-1 – volume: 5 year: 2010 ident: CR74 article-title: Predictors of multidrug-and extensively drug-resistant tuberculosis in a high HIV prevalence community publication-title: PLoS ONE doi: 10.1371/journal.pone.0015735 – ident: CR222 – volume: 59 start-page: 2100621 year: 2022 ident: CR47 article-title: Emergence of bedaquiline resistance in a high tuberculosis burden country publication-title: Eur. Respir. J. doi: 10.1183/13993003.00621-2021 – ident: CR142 – volume: 385 start-page: 2441 year: 2021 end-page: 2450 ident: CR164 article-title: Multicomponent strategy with decentralized molecular testing for tuberculosis publication-title: N. Engl. J. Med. doi: 10.1056/NEJMoa2105470 – volume: 60 start-page: e00646-21 year: 2022 ident: CR180 article-title: Nanopore sequencing for : a critical review of the literature, new developments, and future opportunities publication-title: J. Clin. Microbiol. doi: 10.1128/JCM.00646-21 – ident: CR233 – volume: 2 start-page: 100115 year: 2023 ident: CR246 article-title: Anxiety and depression level of patients with multidrug-resistant tuberculosis (MDR-TB) in two hospitals in Banten province, Indonesia publication-title: Dialogues Health doi: 10.1016/j.dialog.2023.100115 – volume: 56 start-page: 10 year: 2018 end-page: 1128 ident: CR182 article-title: Xpert Ultra can unambiguously identify specific rifampin resistance-conferring mutations publication-title: J. Clin. Microbiol. doi: 10.1128/JCM.00686-18 – volume: 77 start-page: 469 year: 2018 end-page: 478 ident: CR89 article-title: Risk factors of multidrug-resistant tuberculosis: a global systematic review and meta-analysis publication-title: J. Infect. doi: 10.1016/j.jinf.2018.10.004 – volume: 116 start-page: 19665 year: 2019 end-page: 19674 ident: CR133 article-title: Phase variation in produces transiently heritable drug tolerance publication-title: Proc. Natl Acad. Sci. USA doi: 10.1073/pnas.1907631116 – volume: 13 start-page: 955050 year: 2022 ident: CR46 article-title: Linezolid resistance in multidrug-resistant : a systematic review and meta-analysis publication-title: Front. Pharmacol. doi: 10.3389/fphar.2022.955050 – volume: 14 year: 2022 ident: CR69 article-title: High fluoroquinolone resistance proportions among multidrug-resistant tuberculosis driven by dominant L2 clones in the Mumbai Metropolitan Region publication-title: Genome Med. doi: 10.1186/s13073-022-01076-0 – volume: 383 start-page: 424 year: 2014 end-page: 435 ident: CR160 article-title: Feasibility, accuracy, and clinical effect of point-of-care Xpert MTB/RIF testing for tuberculosis in primary-care settings in Africa: a multicentre, randomised, controlled trial publication-title: Lancet doi: 10.1016/S0140-6736(13)62073-5 – volume: 24 start-page: 1800392 year: 2019 ident: CR228 article-title: Isoniazid (INH) mono-resistance and tuberculosis (TB) treatment success: analysis of European surveillance data, 2002 to 2014 publication-title: Eur. Surveill. doi: 10.2807/1560-7917.ES.2019.24.12.1800392 – ident: CR3 – volume: 18 start-page: 779 year: 2018 end-page: 787 ident: CR30 article-title: Prevalence of drug-resistant tuberculosis and imputed burden in South Africa: a national and sub-national cross-sectional survey publication-title: Lancet Infect. Dis. doi: 10.1016/S1473-3099(18)30222-6 – volume: 13 start-page: 137 year: 2013 end-page: 146 ident: CR185 article-title: Whole-genome sequencing to delineate outbreaks: a retrospective observational study publication-title: Lancet Infect. Dis. doi: 10.1016/S1473-3099(12)70277-3 – volume: 10 start-page: 2128 year: 2019 ident: CR124 article-title: GWAS for quantitative resistance phenotypes in reveals resistance genes and regulatory regions publication-title: Nat. Commun. doi: 10.1038/s41467-019-10110-6 – volume: 19 start-page: 100144 year: 2020 ident: CR32 article-title: Closing gaps in the tuberculosis care cascade: an action-oriented research agenda publication-title: J. Clin. Tuberc. Mycobact. Dis. – volume: 23 year: 2022 ident: CR192 article-title: Sequencing mycobacteria and algorithm-determined resistant tuberculosis treatment (SMARTT): a study protocol for a phase-IV pragmatic randomized controlled patient management strategy trial publication-title: Trials doi: 10.1186/s13063-022-06793-w – volume: 11 start-page: 2737 year: 2022 ident: CR249 article-title: The effects of acceptance and commitment therapy on psychosocial impact and adherence of multidrug-resistant tuberculosis patients publication-title: J. Public Health Res. – volume: 280 start-page: 38942 year: 2005 end-page: 38947 ident: CR111 article-title: Methyltransferase Erm(37) slips on rRNA to confer atypical resistance in publication-title: J. Biol. Chem. doi: 10.1074/jbc.M505727200 – volume: 69 start-page: 331 year: 2013 end-page: 342 ident: CR119 article-title: Systematic review of allelic exchange experiments aimed at identifying mutations that confer drug resistance in publication-title: J. Antimicrob. Chemother. doi: 10.1093/jac/dkt358 – volume: 17 start-page: 223 year: 2017 end-page: 234 ident: CR229 article-title: Treatment of isoniazid-resistant tuberculosis with first-line drugs: a systematic review and meta-analysis publication-title: Lancet Infect. Dis. doi: 10.1016/S1473-3099(16)30407-8 – volume: 53 start-page: 369 year: 2011 end-page: 372 ident: CR17 article-title: Treatment outcomes of isoniazid-resistant tuberculosis patients, Western Cape Province, South Africa publication-title: Clin. Infect. Dis. doi: 10.1093/cid/cir406 – ident: CR159 – volume: 367 start-page: l5894 year: 2019 ident: CR60 article-title: Transmissibility and potential for disease progression of drug resistant : prospective cohort study publication-title: BMJ doi: 10.1136/bmj.l5894 – ident: CR216 – volume: 392 start-page: 821 year: 2018 end-page: 834 ident: CR18 article-title: Treatment correlates of successful outcomes in pulmonary multidrug-resistant tuberculosis: an individual patient data meta-analysis publication-title: Lancet doi: 10.1016/S0140-6736(18)31644-1 – volume: 60 start-page: e02362 year: 2022 end-page: 21 ident: CR195 article-title: Whole-genome sequencing has the potential to improve treatment for rifampicin-resistant tuberculosis in high-burden settings: a retrospective cohort study publication-title: J. Clin. Microbiol. doi: 10.1128/jcm.02362-21 – volume: 15 year: 2024 ident: CR123 article-title: Quantitative measurement of antibiotic resistance in reveals genetic determinants of resistance and susceptibility in a target gene approach publication-title: Nat. Commun. doi: 10.1038/s41467-023-44325-5 – ident: CR211 – ident: CR4 – ident: CR240 – volume: 2 start-page: e584 year: 2021 end-page: e593 ident: CR70 article-title: Potential contribution of HIV during first-line tuberculosis treatment to subsequent rifampicin-monoresistant tuberculosis and acquired tuberculosis drug resistance in South Africa: a retrospective molecular epidemiology study publication-title: Lancet Microbe doi: 10.1016/S2666-5247(21)00144-0 – volume: 33 start-page: 466 year: 2001 end-page: 469 ident: CR114 article-title: Early bactericidal activity of amoxicillin in combination with clavulanic acid in patients with sputum smear-positive pulmonary tuberculosis publication-title: Scand. J. Infect. Dis. doi: 10.1080/00365540152029954 – volume: 54 start-page: 1900982 year: 2019 ident: CR19 article-title: Fluoroquinolones and isoniazid-resistant tuberculosis: implications for the 2018 WHO guidance publication-title: Eur. Respir. J. doi: 10.1183/13993003.00982-2019 – volume: 74 start-page: 882 year: 2019 end-page: 889 ident: CR6 article-title: Extensive global movement of multidrug-resistant strains revealed by whole-genome analysis publication-title: Thorax doi: 10.1136/thoraxjnl-2018-211616 – ident: CR12 – volume: 13 start-page: 43 year: 2023 end-page: 49 ident: CR194 article-title: Operationalising targeted next-generation sequencing for routine diagnosis of drug-resistant TB publication-title: Public Health Action. doi: 10.5588/pha.22.0041 – volume: 51 start-page: 1055 year: 2007 end-page: 1063 ident: CR261 article-title: EthA, a common activator of thiocarbamide-containing drugs acting on different mycobacterial targets publication-title: Antimicrob. Agents Chemother. doi: 10.1128/AAC.01063-06 – volume: 53 start-page: 2230 year: 2015 end-page: 2237 ident: CR189 article-title: Rapid whole-genome sequencing of isolates directly from clinical samples publication-title: J. Clin. Microbiol. doi: 10.1128/JCM.00486-15 – volume: 2 start-page: 237 year: 2018 end-page: 238 ident: CR227 article-title: Drug-resistant tuberculosis: will grand promises fail children and adolescents? publication-title: Lancet Child. Adolesc. Health doi: 10.1016/S2352-4642(18)30068-3 – volume: 49 start-page: 1350 year: 2009 end-page: 1357 ident: CR1 article-title: Epidemiology of extrapulmonary tuberculosis in the United States, 1993–2006 publication-title: Clin. Infect. Dis. doi: 10.1086/605559 – volume: 11 start-page: e03991-22 year: 2023 ident: CR55 article-title: The evolution and transmission dynamics of multidrug-resistant tuberculosis in an isolated high-plateau population of Tibet, China publication-title: Microbiol. Spectr. doi: 10.1128/spectrum.03991-22 – volume: 13 start-page: 1148 year: 2009 end-page: 1153 ident: CR73 article-title: Prevalence and risk factors for drug resistance among hospitalized tuberculosis patients in Georgia publication-title: Int. J. Tuberc. Lung Dis. – volume: 22 start-page: 1042 year: 2022 end-page: 1051 ident: CR203 article-title: Treatment outcomes 24 months after initiating short bedaquiline-containing or injectable-containing rifampicin-resistant tuberculosis treatment regimens: a retrospective cohort study in South Africa. publication-title: Lancet Infect. Dis. doi: 10.1016/S1473-3099(21)00811-2 – volume: 205 start-page: 1214 year: 2022 end-page: 1227 ident: CR206 article-title: An all-oral 6-month regimen for multidrug-resistant tuberculosis: a multicenter, randomized controlled clinical trial (the NExT study) publication-title: Am. J. Respir. Crit. Care Med. doi: 10.1164/rccm.202107-1779OC – ident: CR50 – volume: 7 start-page: e191 year: 2019 end-page: e199 ident: CR162 article-title: Effect of Xpert MTB/RIF on clinical outcomes in routine care settings: individual patient data meta-analysis publication-title: Lancet Glob. Health doi: 10.1016/S2214-109X(18)30458-3 – volume: 52 start-page: 1800246 year: 2018 ident: CR57 article-title: Extensively drug-resistant tuberculosis in South Africa: genomic evidence supporting transmission in communities publication-title: Eur. Respir. J. doi: 10.1183/13993003.00246-2018 – volume: 345 start-page: 1545 year: 1995 end-page: 1548 ident: CR64 article-title: Directly observed therapy for tuberculosis: history of an idea publication-title: Lancet doi: 10.1016/S0140-6736(95)91090-5 – volume: 194 start-page: 621 year: 2016 end-page: 630 ident: CR118 article-title: Genetic determinants of drug resistance in and their diagnostic value publication-title: Am. J. Respir. Crit. Care Med. doi: 10.1164/rccm.201510-2091OC – volume: 2021 start-page: CD009593 year: 2021 ident: CR156 article-title: Xpert Ultra versus Xpert MTB/RIF for pulmonary tuberculosis and rifampicin resistance in adults with presumptive pulmonary tuberculosis publication-title: Cochrane Database Syst. Rev. – ident: CR9 – volume: 40 start-page: msad131 year: 2023 ident: CR122 article-title: Analysis of genome-wide mutational dependence in naturally evolving populations publication-title: Mol. Biol. Evol. doi: 10.1093/molbev/msad131 – volume: 208 start-page: 130 year: 2023 end-page: 131 ident: CR224 article-title: Making the case for all-oral, shorter regimens for children with drug-resistant tuberculosis. publication-title: Am. J. Respir. Crit. Care Med. doi: 10.1164/rccm.202304-0670VP – volume: 387 start-page: 2331 year: 2022 end-page: 2343 ident: CR198 article-title: A 24-week, all-oral regimen for rifampin-resistant tuberculosis publication-title: N. Engl. J. Med. doi: 10.1056/NEJMoa2117166 – volume: 55 start-page: 169 year: 2012 end-page: 177 ident: CR65 article-title: Meta-analysis of clinical studies supports the pharmacokinetic variability hypothesis for acquired drug resistance and failure of antituberculosis therapy publication-title: Clin. Infect. Dis. doi: 10.1093/cid/cis353 – volume: 7 year: 2017 ident: CR184 article-title: Culture and next-generation sequencing-based drug susceptibility testing unveil high levels of drug-resistant-TB in Djibouti: results from the first national survey publication-title: Sci. Rep. doi: 10.1038/s41598-017-17705-3 – volume: 23 start-page: 666 year: 2016 end-page: 677 ident: CR260 article-title: Baeyer-Villiger monooxygenases EthA and MymA are required for activation of replicating and non-replicating inhibitors publication-title: Cell Chem. Biol. doi: 10.1016/j.chembiol.2016.05.011 – ident: CR239 – volume: 10 start-page: 106 year: 2021 ident: CR83 article-title: Reducing the risk of tuberculosis transmission for HCWs in high incidence settings publication-title: Antimicrob. Resist. Infect. Control doi: 10.1186/s13756-021-00975-y – volume: 17 start-page: 1942 year: 2011 end-page: 1945 ident: CR95 article-title: Extensively drug-resistant tuberculosis in women, KwaZulu-Natal, South Africa publication-title: Emerg. Infect. Dis. doi: 10.3201/eid1710.110105 – volume: 19 start-page: 903 year: 2019 end-page: 912 ident: CR24 article-title: Global burden of latent multidrug-resistant tuberculosis: trends and estimates based on mathematical modelling publication-title: Lancet Infect. Dis. doi: 10.1016/S1473-3099(19)30307-X – volume: 4 start-page: dlac029 year: 2022 ident: CR48 article-title: Acquired bedaquiline resistance during the treatment of drug-resistant tuberculosis: a systematic review publication-title: JAC Antimicrob. Resist. doi: 10.1093/jacamr/dlac029 – volume: 299 start-page: 269 year: 2009 end-page: 280 ident: CR259 article-title: nucleotide polymorphisms and the role of mutations in resistance to ethambutol publication-title: Int. J. Med. Microbiol. doi: 10.1016/j.ijmm.2008.07.001 – volume: 63 start-page: e00092-19 year: 2019 ident: CR126 article-title: Isoniazid resistance in is a heterogeneous phenotype composed of overlapping MIC distributions with different underlying resistance mechanisms publication-title: Antimicrob. Agents Chemother. doi: 10.1128/AAC.00092-19 – volume: 323 start-page: 1215 year: 2009 end-page: 1218 ident: CR115 article-title: Meropenem-clavulanate is effective against extensively drug-desistant publication-title: Science doi: 10.1126/science.1167498 – volume: 56 start-page: 2000626 year: 2020 ident: CR94 article-title: The risk of multidrug-or rifampicin-resistance in males versus females with tuberculosis publication-title: Eur. Respir. J. doi: 10.1183/13993003.00626-2020 – ident: CR152 – volume: 27 start-page: 1308 year: 2021 end-page: 1308 ident: CR103 article-title: Publisher Correction: prisons as ecological drivers of fitness-compensated multidrug-resistant publication-title: Nat. Med. doi: 10.1038/s41591-021-01417-3 – ident: CR217 – volume: 14 start-page: 892 year: 2009 end-page: 909 ident: CR87 article-title: A systematic review and meta-analysis of molecular epidemiological studies of tuberculosis: development of a new tool to aid interpretation publication-title: Trop. Med. Int. Health doi: 10.1111/j.1365-3156.2009.02316.x – volume: 17 start-page: e1116-20 year: 2013 ident: CR88 article-title: Risk factors for multidrug resistance among previously treated patients with tuberculosis in eastern China: a case-control study publication-title: Int. J. Infect. Dis. doi: 10.1016/j.ijid.2013.06.006 – volume: 55 start-page: 102747 year: 2020 ident: CR140 article-title: Dynamics of within-host diversity and heteroresistance during treatment publication-title: EBioMedicine doi: 10.1016/j.ebiom.2020.102747 – volume: 14 year: 2023 ident: CR104 article-title: The relative transmission fitness of multidrug-resistant in a drug resistance hotspot publication-title: Nat. Commun. doi: 10.1038/s41467-023-37719-y – volume: 2021 start-page: 8817442 year: 2021 ident: CR76 article-title: Predictors of drug-resistant tuberculosis among high-risk population diagnosed under national program conditions in the Littoral region, Cameroon publication-title: BioMed. Res. Int. doi: 10.1155/2021/8817442 – volume: 9 start-page: 1107 year: 2014 end-page: 1116 ident: CR245 article-title: Preferential adherence to antiretroviral therapy over tuberculosis treatment: a qualitative study of drug-resistant TB/HIV co-infected patients in South Africa publication-title: Glob. Public Health doi: 10.1080/17441692.2014.934266 – volume: 386 start-page: 93 year: 2022 end-page: 94 ident: CR44 article-title: Bedaquiline-resistant tuberculosis associated with Rv0678 mutations publication-title: N. Engl. J. Med. doi: 10.1056/NEJMc2103049 – ident: CR212 – volume: 10 start-page: 1034 year: 2022 end-page: 1044 ident: CR51 article-title: The global impact of household contact management for children on multidrug-resistant and rifampicin-resistant tuberculosis cases, deaths, and health-system costs in 2019: a modelling study publication-title: Lancet Glob. Health doi: 10.1016/S2214-109X(22)00113-9 – volume: 59 start-page: e02314-20 year: 2021 ident: CR166 article-title: Xpert MTB/XDR: a 10-color reflex assay suitable for point-of-care settings to detect isoniazid, fluoroquinolone, and second-line-injectable-drug resistance directly from Mycobacterium tuberculosis-positive sputum publication-title: J. Clin. Microbiol. doi: 10.1128/JCM.02314-20 – volume: 22 start-page: 3 year: 2018 end-page: 6 ident: CR49 article-title: The burden of multidrug-resistant tuberculosis in children publication-title: Int. J. Tuberc. Lung Dis. doi: 10.5588/ijtld.17.0357 – volume: 139 start-page: 3488 year: 2017 end-page: 3495 ident: CR110 article-title: Visualization of mycobacterial membrane dynamics in live cells publication-title: J. Am. Chem. Soc. doi: 10.1021/jacs.6b12541 – volume: 382 start-page: 893 year: 2020 end-page: 902 ident: CR197 article-title: Treatment of highly drug-resistant pulmonary tuberculosis publication-title: N. Engl. J. Med. doi: 10.1056/NEJMoa1901814 – volume: 34 start-page: 214 year: 2023 end-page: 226 ident: CR174 article-title: Evaluation of genetic mutations associated with phenotypic resistance to fluoroquinolones, bedaquiline, and linezolid in clinical : a systematic review and meta-analysis publication-title: J. Glob. Antimicrob. Resist. doi: 10.1016/j.jgar.2023.05.001 – volume: 11 year: 2020 ident: CR268 article-title: Pyrazinamide triggers degradation of its target aspartate decarboxylase publication-title: Nat. Commun. doi: 10.1038/s41467-020-15516-1 – volume: 10 year: 2021 ident: CR139 article-title: In-host population dynamics of complex during active disease publication-title: eLife doi: 10.7554/eLife.61805 – volume: 21 year: 2021 ident: CR42 article-title: Drug susceptibility patterns of from adults with multidrug-resistant tuberculosis and implications for a household contact preventive therapy trial publication-title: BMC Infect. Dis. doi: 10.1186/s12879-021-05884-4 – volume: 61 start-page: 789 year: 2019 end-page: 791 ident: CR141 article-title: Minority genotypic populations as an indicator of subsequent phenotypic resistance publication-title: Am. J. Respir. Cell Mol. Biol. doi: 10.1165/rcmb.2019-0178LE – volume: 47 start-page: 199 year: 2015 end-page: 210 ident: CR196 article-title: Whole genome sequencing in clinical and public health microbiology publication-title: Pathology doi: 10.1097/PAT.0000000000000235 – volume: 74 start-page: 1477 year: 2019 end-page: 1483 ident: CR272 article-title: Rifampicin and rifabutin resistance in 1003 clinical isolates publication-title: J. Antimicrob. Chemother. doi: 10.1093/jac/dkz048 – volume: 3 start-page: e265 year: 2022 end-page: e273 ident: CR125 article-title: The 2021 WHO catalogue of complex mutations associated with drug resistance: a genotypic analysis publication-title: Lancet Microbe doi: 10.1016/S2666-5247(21)00301-3 – volume: 14 year: 2019 ident: CR67 article-title: An attempt to reproduce a previous meta-analysis and a new analysis regarding the impact of directly observed therapy on tuberculosis treatment outcomes publication-title: PLoS ONE doi: 10.1371/journal.pone.0217219 – volume: 378 start-page: 1111 year: 2022 end-page: 1118 ident: CR135 article-title: Tuberculosis treatment failure associated with evolution of antibiotic resilience publication-title: Science doi: 10.1126/science.abq2787 – volume: 22 start-page: 735 year: 2012 end-page: 745 ident: CR102 article-title: Microevolution of extensively drug-resistant tuberculosis in Russia publication-title: Genome Res. doi: 10.1101/gr.128678.111 – volume: 7 start-page: e191 year: 2019 ident: 1025_CR162 publication-title: Lancet Glob. Health doi: 10.1016/S2214-109X(18)30458-3 – volume: 205 start-page: 233 year: 2022 ident: 1025_CR61 publication-title: Am. J. Respir. Crit. Care Med. doi: 10.1164/rccm.202012-4333OC – volume: 323 start-page: 1215 year: 2009 ident: 1025_CR115 publication-title: Science doi: 10.1126/science.1167498 – volume: 13 year: 2022 ident: 1025_CR136 publication-title: Nat. Commun. doi: 10.1038/s41467-022-29832-1 – volume: 74 start-page: 1477 year: 2019 ident: 1025_CR272 publication-title: J. Antimicrob. Chemother. doi: 10.1093/jac/dkz048 – volume: 13 start-page: 1148 year: 2009 ident: 1025_CR73 publication-title: Int. J. Tuberc. Lung Dis. – volume: 25 start-page: 564 year: 2005 ident: 1025_CR147 publication-title: Eur. Respir. J. doi: 10.1183/09031936.05.00111304 – ident: 1025_CR217 – volume: 21 year: 2021 ident: 1025_CR42 publication-title: BMC Infect. Dis. doi: 10.1186/s12879-021-05884-4 – volume: 12 year: 2017 ident: 1025_CR82 publication-title: PLoS ONE doi: 10.1371/journal.pone.0171800 – ident: 1025_CR4 – volume: 62 start-page: e01871-17 year: 2018 ident: 1025_CR171 publication-title: Antimicrob. Agents Chemother. doi: 10.1128/AAC.01871-17 – volume: 11 start-page: e03991-22 year: 2023 ident: 1025_CR55 publication-title: Microbiol. Spectr. doi: 10.1128/spectrum.03991-22 – volume: 9 year: 2014 ident: 1025_CR85 publication-title: PLoS ONE doi: 10.1371/journal.pone.0087262 – volume: 49 start-page: 1350 year: 2009 ident: 1025_CR1 publication-title: Clin. Infect. Dis. doi: 10.1086/605559 – volume: 17 start-page: 1942 year: 2011 ident: 1025_CR95 publication-title: Emerg. Infect. Dis. doi: 10.3201/eid1710.110105 – volume: 411 start-page: 116719 year: 2020 ident: 1025_CR97 publication-title: J. Neurol. Sci. doi: 10.1016/j.jns.2020.116719 – volume: 91 start-page: 538 year: 2014 ident: 1025_CR264 publication-title: Mol. Microbiol. doi: 10.1111/mmi.12476 – ident: 1025_CR172 – volume: 13 start-page: 869647 year: 2022 ident: 1025_CR243 publication-title: Front. Psychiatry doi: 10.3389/fpsyt.2022.869647 – ident: 1025_CR25 – volume: 13 start-page: 137 year: 2013 ident: 1025_CR185 publication-title: Lancet Infect. Dis. doi: 10.1016/S1473-3099(12)70277-3 – ident: 1025_CR212 – volume: 23 year: 2022 ident: 1025_CR192 publication-title: Trials doi: 10.1186/s13063-022-06793-w – volume: 11 start-page: 2737 year: 2022 ident: 1025_CR249 publication-title: J. Public Health Res. – ident: 1025_CR7 doi: 10.1016/S0140-6736(75)91426-9 – ident: 1025_CR9 – volume: 65 start-page: e01948 year: 2020 ident: 1025_CR256 publication-title: Antimicrob. Agents Chemother. doi: 10.1128/AAC.01948-20 – volume: 13 start-page: 955050 year: 2022 ident: 1025_CR46 publication-title: Front. Pharmacol. doi: 10.3389/fphar.2022.955050 – volume: 65 year: 2021 ident: 1025_CR117 publication-title: Antimicrob. Agents Chemother. doi: 10.1128/AAC.01164-21 – volume: 18 start-page: 76 year: 2018 ident: 1025_CR154 publication-title: Lancet Infect. Dis. doi: 10.1016/S1473-3099(17)30691-6 – volume: 399 start-page: 629 year: 2022 ident: 1025_CR23 publication-title: Lancet doi: 10.1016/S0140-6736(21)02724-0 – volume: 392 start-page: 821 year: 2018 ident: 1025_CR18 publication-title: Lancet doi: 10.1016/S0140-6736(18)31644-1 – volume: 27 start-page: 1308 year: 2021 ident: 1025_CR103 publication-title: Nat. Med. doi: 10.1038/s41591-021-01417-3 – volume: 387 start-page: 2331 year: 2022 ident: 1025_CR198 publication-title: N. Engl. J. Med. doi: 10.1056/NEJMoa2117166 – volume: 7 start-page: 009657 year: 2022 ident: 1025_CR41 publication-title: BMJ Glob. Health doi: 10.1136/bmjgh-2022-009657 – volume: 19 start-page: 903 year: 2019 ident: 1025_CR24 publication-title: Lancet Infect. Dis. doi: 10.1016/S1473-3099(19)30307-X – volume: 14 start-page: 892 year: 2009 ident: 1025_CR87 publication-title: Trop. Med. Int. Health doi: 10.1111/j.1365-3156.2009.02316.x – volume: 11 year: 2019 ident: 1025_CR5 publication-title: Genome Med. doi: 10.1186/s13073-019-0660-8 – volume: 5 start-page: 291 year: 2017 ident: 1025_CR86 publication-title: Lancet Respir. Med. doi: 10.1016/S2213-2600(17)30079-6 – volume: 2021 start-page: 8817442 year: 2021 ident: 1025_CR76 publication-title: BioMed. Res. Int. doi: 10.1155/2021/8817442 – volume: 77 start-page: 469 year: 2018 ident: 1025_CR89 publication-title: J. Infect. doi: 10.1016/j.jinf.2018.10.004 – volume: 7 start-page: 766 year: 2022 ident: 1025_CR106 publication-title: Nat. Microbiol. doi: 10.1038/s41564-022-01130-y – volume: 3 start-page: 1032 year: 2018 ident: 1025_CR134 publication-title: Nat. Microbiol. doi: 10.1038/s41564-018-0218-3 – volume: 6 year: 2021 ident: 1025_CR39 publication-title: BMJ Glob. Health doi: 10.1136/bmjgh-2021-005250 – volume: 14 year: 2019 ident: 1025_CR100 publication-title: PLoS ONE doi: 10.1371/journal.pone.0226507 – volume: 116 start-page: 19665 year: 2019 ident: 1025_CR133 publication-title: Proc. Natl Acad. Sci. USA doi: 10.1073/pnas.1907631116 – volume: 200 start-page: e93 year: 2019 ident: 1025_CR273 publication-title: Am. J. Respir. Crit. Care Med. doi: 10.1164/rccm.201909-1874ST – volume: 362 start-page: k2738 year: 2018 ident: 1025_CR92 publication-title: BMJ doi: 10.1136/bmj.k2738 – ident: 1025_CR178 – volume: 16 start-page: 100101 year: 2019 ident: 1025_CR251 publication-title: J. Clin. Tuberc. Mycobact. Dis. – ident: 1025_CR43 – volume: 48 start-page: 516 year: 2016 ident: 1025_CR155 publication-title: Eur. Respir. J. doi: 10.1183/13993003.00543-2016 – volume: 202 start-page: 1159 year: 2020 ident: 1025_CR235 publication-title: Am. J. Respir. Crit. Care Med. doi: 10.1164/rccm.201908-1576OC – ident: 1025_CR12 – volume: 22 start-page: 242 year: 2022 ident: 1025_CR165 publication-title: Lancet Infect. Dis. doi: 10.1016/S1473-3099(21)00452-7 – volume: 63 start-page: e00092-19 year: 2019 ident: 1025_CR126 publication-title: Antimicrob. Agents Chemother. doi: 10.1128/AAC.00092-19 – volume: 61 start-page: e01086-22 year: 2023 ident: 1025_CR149 publication-title: J. Clin. Microbiol. doi: 10.1128/jcm.01086-22 – volume: 102 start-page: 12200 year: 2005 ident: 1025_CR108 publication-title: Proc. Natl Acad. Sci. USA doi: 10.1073/pnas.0505446102 – volume: 50 start-page: 2762 year: 2006 ident: 1025_CR112 publication-title: Antimicrob. Agents Chemother. doi: 10.1128/AAC.00320-06 – volume: 56 start-page: 10 year: 2018 ident: 1025_CR182 publication-title: J. Clin. Microbiol. doi: 10.1128/JCM.00686-18 – volume: 12 start-page: 1749 year: 2015 ident: 1025_CR16 publication-title: Ann. Am. Thorac. Soc. doi: 10.1513/AnnalsATS.201509-632PS – volume: 5 year: 2020 ident: 1025_CR145 publication-title: BMJ Glob. Health doi: 10.1136/bmjgh-2019-002280 – volume: 17 start-page: 275 year: 2017 ident: 1025_CR59 publication-title: Lancet Infect. Dis. doi: 10.1016/S1473-3099(16)30418-2 – volume: 20 year: 2020 ident: 1025_CR91 publication-title: BMC Infect. Dis. doi: 10.1186/s12879-020-05157-6 – volume: 55 start-page: 102747 year: 2020 ident: 1025_CR140 publication-title: EBioMedicine doi: 10.1016/j.ebiom.2020.102747 – volume: 378 start-page: 1111 year: 2022 ident: 1025_CR135 publication-title: Science doi: 10.1126/science.abq2787 – ident: 1025_CR179 – volume: 3 start-page: e265 year: 2022 ident: 1025_CR125 publication-title: Lancet Microbe doi: 10.1016/S2666-5247(21)00301-3 – volume: 2 start-page: e96 year: 2021 ident: 1025_CR56 publication-title: Lancet Microbe doi: 10.1016/S2666-5247(20)30195-6 – volume: 76 start-page: e938 year: 2022 ident: 1025_CR199 publication-title: Clin. Infect. Dis. doi: 10.1093/cid/ciac528 – volume: 2 start-page: 100115 year: 2023 ident: 1025_CR246 publication-title: Dialogues Health doi: 10.1016/j.dialog.2023.100115 – volume: 45 start-page: 1190 year: 2013 ident: 1025_CR258 publication-title: Nat. Genet. doi: 10.1038/ng.2743 – volume: 7 start-page: 1 year: 2018 ident: 1025_CR187 publication-title: Afr. J. Lab. Med. – volume: 52 start-page: 1800246 year: 2018 ident: 1025_CR57 publication-title: Eur. Respir. J. doi: 10.1183/13993003.00246-2018 – volume: 19 start-page: 100144 year: 2020 ident: 1025_CR32 publication-title: J. Clin. Tuberc. Mycobact. Dis. – volume: 2 start-page: 237 year: 2018 ident: 1025_CR227 publication-title: Lancet Child. Adolesc. Health doi: 10.1016/S2352-4642(18)30068-3 – volume: 55 start-page: 169 year: 2012 ident: 1025_CR65 publication-title: Clin. Infect. Dis. doi: 10.1093/cid/cis353 – volume: 49 start-page: 708 year: 2005 ident: 1025_CR265 publication-title: Antimicrob. Agents Chemother. doi: 10.1128/AAC.49.2.708-720.2005 – ident: 1025_CR233 – volume: 93 start-page: 13212 year: 1996 ident: 1025_CR263 publication-title: Proc. Natl Acad. Sci. USA doi: 10.1073/pnas.93.23.13212 – volume: 8 year: 2013 ident: 1025_CR72 publication-title: PLoS ONE doi: 10.1371/journal.pone.0071867 – volume: 22 year: 2021 ident: 1025_CR218 publication-title: Trials doi: 10.1186/s13063-021-05491-3 – volume: 10 year: 2021 ident: 1025_CR139 publication-title: eLife doi: 10.7554/eLife.61805 – volume: 9 year: 2019 ident: 1025_CR151 publication-title: Sci. Rep. doi: 10.1038/s41598-019-48401-z – ident: 1025_CR216 – ident: 1025_CR20 – ident: 1025_CR14 – volume: 53 start-page: 2230 year: 2015 ident: 1025_CR189 publication-title: J. Clin. Microbiol. doi: 10.1128/JCM.00486-15 – volume: 12 year: 2015 ident: 1025_CR54 publication-title: PLoS Med. doi: 10.1371/journal.pmed.1001880 – volume: 21 start-page: S81 year: 2017 ident: 1025_CR248 publication-title: Int. J. Tuberc. Lung Dis. doi: 10.5588/ijtld.16.0788 – volume: 33 start-page: 466 year: 2001 ident: 1025_CR114 publication-title: Scand. J. Infect. Dis. doi: 10.1080/00365540152029954 – volume: 400 start-page: 1522 year: 2022 ident: 1025_CR215 publication-title: Lancet doi: 10.1016/S0140-6736(22)01883-9 – volume: 68 start-page: 1522 year: 2019 ident: 1025_CR204 publication-title: Clin. Infect. Dis. doi: 10.1093/cid/ciy727 – ident: 1025_CR222 – volume: 53 start-page: 369 year: 2011 ident: 1025_CR17 publication-title: Clin. Infect. Dis. doi: 10.1093/cid/cir406 – volume: 16 start-page: 100109 year: 2019 ident: 1025_CR38 publication-title: Afr. J. Clin. Tuberc. Mycobact. Dis. – volume: 47 start-page: 199 year: 2015 ident: 1025_CR196 publication-title: Pathology doi: 10.1097/PAT.0000000000000235 – volume: 385 start-page: 2441 year: 2021 ident: 1025_CR164 publication-title: N. Engl. J. Med. doi: 10.1056/NEJMoa2105470 – volume: 1 start-page: e175 year: 2020 ident: 1025_CR191 publication-title: Lancet Microbe doi: 10.1016/S2666-5247(20)30060-4 – ident: 1025_CR211 – volume: 13 year: 2016 ident: 1025_CR35 publication-title: PLoS Med. doi: 10.1371/journal.pmed.1002149 – volume: 139 start-page: 3488 year: 2017 ident: 1025_CR110 publication-title: J. Am. Chem. Soc. doi: 10.1021/jacs.6b12541 – volume: 16 start-page: 784 year: 2023 ident: 1025_CR175 publication-title: Pharmaceuticals doi: 10.3390/ph16060784 – volume: 11 year: 2021 ident: 1025_CR98 publication-title: BMJ Open doi: 10.1136/bmjopen-2020-043050 – volume: 10 start-page: 2128 year: 2019 ident: 1025_CR124 publication-title: Nat. Commun. doi: 10.1038/s41467-019-10110-6 – ident: 1025_CR240 – volume: 11 start-page: 2337 year: 2023 ident: 1025_CR253 publication-title: Nat. Med. – volume: 7 year: 2012 ident: 1025_CR161 publication-title: PLoS ONE doi: 10.1371/journal.pone.0048599 – volume: 120 year: 2023 ident: 1025_CR116 publication-title: Proc. Natl Acad. Sci. USA doi: 10.1073/pnas.2301394120 – volume: 20 start-page: 100176 year: 2020 ident: 1025_CR186 publication-title: J. Clin. Tuberc. Mycobact. Dis. – volume: 367 start-page: l5894 year: 2019 ident: 1025_CR60 publication-title: BMJ doi: 10.1136/bmj.l5894 – volume: 2 start-page: e584 year: 2021 ident: 1025_CR70 publication-title: Lancet Microbe doi: 10.1016/S2666-5247(21)00144-0 – volume: 14 start-page: 1120 year: 2010 ident: 1025_CR84 publication-title: Int. J. Tuberc. Lung Dis. – volume: 14 year: 2019 ident: 1025_CR67 publication-title: PLoS ONE doi: 10.1371/journal.pone.0217219 – volume: 13 year: 2021 ident: 1025_CR132 publication-title: Genome Med. doi: 10.1186/s13073-021-00953-4 – ident: 1025_CR101 doi: 10.1101/2022.01.04.22268645 – volume: 13 start-page: 68 year: 2009 ident: 1025_CR90 publication-title: Int. J. Tuberc. Lung Dis. – volume: 14 year: 2023 ident: 1025_CR104 publication-title: Nat. Commun. doi: 10.1038/s41467-023-37719-y – ident: 1025_CR239 – volume: 60 start-page: e00646-21 year: 2022 ident: 1025_CR180 publication-title: J. Clin. Microbiol. doi: 10.1128/JCM.00646-21 – volume: 13 year: 2018 ident: 1025_CR75 publication-title: PLoS ONE doi: 10.1371/journal.pone.0197737 – ident: 1025_CR3 – volume: 73 start-page: 1138 year: 2018 ident: 1025_CR52 publication-title: J. Antimicrob. Chemother. doi: 10.1093/jac/dkx506 – volume: 13 start-page: 43 year: 2023 ident: 1025_CR194 publication-title: Public Health Action. doi: 10.5588/pha.22.0041 – volume: 25 start-page: 461 year: 2021 ident: 1025_CR244 publication-title: Int. J. Tuberc. Lung Dis. doi: 10.5588/ijtld.20.0952 – ident: 1025_CR232 – volume: 5 year: 2020 ident: 1025_CR146 publication-title: BMJ Glob. Health doi: 10.1136/bmjgh-2020-003438 – ident: 1025_CR22 – volume: 93 start-page: 739 year: 2015 ident: 1025_CR78 publication-title: Am. J. Trop. Med. Hyg. doi: 10.4269/ajtmh.15-0166 – volume: 2 start-page: e604 year: 2021 ident: 1025_CR173 publication-title: Lancet Microbe doi: 10.1016/S2666-5247(21)00175-0 – volume: 11 start-page: 1117101 year: 2023 ident: 1025_CR71 publication-title: Front. Public Health doi: 10.3389/fpubh.2023.1117101 – volume: 150 start-page: 853 year: 2004 ident: 1025_CR109 publication-title: Microbiology doi: 10.1099/mic.0.26902-0 – volume: 17 year: 2017 ident: 1025_CR168 publication-title: BMC Infect. Dis. doi: 10.1186/s12879-017-2389-6 – volume: 58 start-page: 2101786 year: 2021 ident: 1025_CR36 publication-title: Eur. Respir. J. doi: 10.1183/13993003.01786-2021 – volume: 5 year: 2010 ident: 1025_CR74 publication-title: PLoS ONE doi: 10.1371/journal.pone.0015735 – volume: 59 start-page: e02168-20 year: 2021 ident: 1025_CR167 publication-title: J. Clin. Microbiol. doi: 10.1128/JCM.02168-20 – volume: 393 start-page: 1642 year: 2019 ident: 1025_CR230 publication-title: Lancet doi: 10.1016/S0140-6736(19)30308-3 – volume: 17 year: 2020 ident: 1025_CR31 publication-title: PLoS Med. doi: 10.1371/journal.pmed.1003008 – volume: 34 start-page: 1666 year: 2018 ident: 1025_CR131 publication-title: Bioinformatics doi: 10.1093/bioinformatics/btx801 – ident: 1025_CR152 – volume: 57 start-page: 1857 year: 2013 ident: 1025_CR266 publication-title: Antimicrob. Agents Chemother. doi: 10.1128/AAC.02191-12 – volume: 379 start-page: 1403 year: 2018 ident: 1025_CR176 publication-title: N. Engl. J. Med. doi: 10.1056/NEJMoa1800474 – volume: 17 start-page: e1116-20 year: 2013 ident: 1025_CR88 publication-title: Int. J. Infect. Dis. doi: 10.1016/j.ijid.2013.06.006 – volume: 386 start-page: 911 year: 2022 ident: 1025_CR225 publication-title: N. Engl. J. Med. doi: 10.1056/NEJMoa2104535 – volume: 216 start-page: S702 year: 2017 ident: 1025_CR34 publication-title: J. Infect. Dis. doi: 10.1093/infdis/jix335 – volume: 26 start-page: 874 year: 1998 ident: 1025_CR113 publication-title: Clin. Infect. Dis. doi: 10.1086/513945 – volume: 75 start-page: 2031 year: 2020 ident: 1025_CR120 publication-title: J. Antimicrob. Chemother. doi: 10.1093/jac/dkaa136 – volume: 59 start-page: e01885-20 year: 2021 ident: 1025_CR150 publication-title: J. Clin. Microbiol. doi: 10.1128/JCM.01885-20 – volume: 11 year: 2018 ident: 1025_CR99 publication-title: BMC Res. Notes doi: 10.1186/s13104-018-3789-4 – volume: 8 start-page: 104 year: 2023 ident: 1025_CR93 publication-title: Trop. Med. Infect. Dis. doi: 10.3390/tropicalmed8020104 – ident: 1025_CR209 – ident: 1025_CR10 – ident: 1025_CR226 – volume: 2 year: 2017 ident: 1025_CR37 publication-title: BMJ Glob. Health doi: 10.1136/bmjgh-2017-000333 – volume: 11 year: 2016 ident: 1025_CR250 publication-title: PLoS ONE doi: 10.1371/journal.pone.0147397 – volume: 299 start-page: 269 year: 2009 ident: 1025_CR259 publication-title: Int. J. Med. Microbiol. doi: 10.1016/j.ijmm.2008.07.001 – volume: 368 start-page: 1575 year: 2006 ident: 1025_CR96 publication-title: Lancet doi: 10.1016/S0140-6736(06)69573-1 – volume: 372 start-page: 1181 year: 2015 ident: 1025_CR181 publication-title: N. Engl. J. Med. doi: 10.1056/NEJMc1413930 – volume: 22 start-page: 3 year: 2018 ident: 1025_CR49 publication-title: Int. J. Tuberc. Lung Dis. doi: 10.5588/ijtld.17.0357 – volume: 91 start-page: 36 year: 2013 ident: 1025_CR77 publication-title: Bull. World Health Organ. doi: 10.2471/BLT.12.104588 – volume: 7 year: 2017 ident: 1025_CR184 publication-title: Sci. Rep. doi: 10.1038/s41598-017-17705-3 – volume: 47 start-page: 564 year: 2016 ident: 1025_CR200 publication-title: Eur. Respir. J. doi: 10.1183/13993003.00724-2015 – ident: 1025_CR238 – volume: 3 start-page: 963 year: 2015 ident: 1025_CR58 publication-title: Lancet Respir. Med. doi: 10.1016/S2213-2600(15)00458-0 – volume: 2021 start-page: CD009593 year: 2021 ident: 1025_CR156 publication-title: Cochrane Database Syst. Rev. – volume: 58 start-page: 2100526 year: 2021 ident: 1025_CR157 publication-title: Eur. Respir. J. doi: 10.1183/13993003.00526-2021 – volume: 204 start-page: 1951 year: 2011 ident: 1025_CR66 publication-title: J. Infect. Dis. doi: 10.1093/infdis/jir658 – volume: 59 start-page: 2100621 year: 2022 ident: 1025_CR47 publication-title: Eur. Respir. J. doi: 10.1183/13993003.00621-2021 – ident: 1025_CR221 – ident: 1025_CR2 – volume: 55 start-page: 1285 year: 2017 ident: 1025_CR188 publication-title: J. Clin. Microbiol. doi: 10.1128/JCM.02483-16 – volume: 49 start-page: 395 year: 2017 ident: 1025_CR68 publication-title: Nat. Genet. doi: 10.1038/ng.3767 – volume: 24 start-page: 60 year: 2018 ident: 1025_CR170 publication-title: Clin. Microbiol. Infect. doi: 10.1016/j.cmi.2017.05.026 – volume: 24 start-page: 1800392 year: 2019 ident: 1025_CR228 publication-title: Eur. Surveill. doi: 10.2807/1560-7917.ES.2019.24.12.1800392 – volume: 167 start-page: 1472 year: 2003 ident: 1025_CR15 publication-title: Am. J. Respir. Crit. Care Med. doi: 10.1164/rccm.200206-626OC – volume: 49 start-page: 1601075 year: 2017 ident: 1025_CR169 publication-title: Eur. Respir. J. doi: 10.1183/13993003.01075-2016 – volume: 2 start-page: 662 year: 1996 ident: 1025_CR269 publication-title: Nat. Med. doi: 10.1038/nm0696-662 – volume: 363 start-page: 1005 year: 2010 ident: 1025_CR11 publication-title: N. Engl. J. Med. doi: 10.1056/NEJMoa0907847 – volume: 9 start-page: 1107 year: 2014 ident: 1025_CR245 publication-title: Glob. Public Health doi: 10.1080/17441692.2014.934266 – ident: 1025_CR210 – volume: 65 start-page: 1359 year: 2010 ident: 1025_CR257 publication-title: J. Antimicrob. Chemother. doi: 10.1093/jac/dkq120 – volume: 106 start-page: 20004 year: 2009 ident: 1025_CR254 publication-title: Proc. Natl Acad. Sci. USA doi: 10.1073/pnas.0907925106 – volume: 21 start-page: 1175 year: 2021 ident: 1025_CR62 publication-title: Lancet Infect. Dis. doi: 10.1016/S1473-3099(20)30732-5 – volume: 56 start-page: e00666 year: 2018 ident: 1025_CR190 publication-title: J. Clin. Microbiol. doi: 10.1128/JCM.00666-18 – volume: 17 start-page: 223 year: 2017 ident: 1025_CR229 publication-title: Lancet Infect. Dis. doi: 10.1016/S1473-3099(16)30407-8 – volume: 22 start-page: 735 year: 2012 ident: 1025_CR102 publication-title: Genome Res. doi: 10.1101/gr.128678.111 – volume: 10 start-page: 106 year: 2021 ident: 1025_CR83 publication-title: Antimicrob. Resist. Infect. Control doi: 10.1186/s13756-021-00975-y – volume: 345 start-page: 1545 year: 1995 ident: 1025_CR64 publication-title: Lancet doi: 10.1016/S0140-6736(95)91090-5 – volume: 34 start-page: 214 year: 2023 ident: 1025_CR174 publication-title: J. Glob. Antimicrob. Resist. doi: 10.1016/j.jgar.2023.05.001 – ident: 1025_CR153 – volume: 3 start-page: 450 year: 2015 ident: 1025_CR163 publication-title: Lancet Glob. Health doi: 10.1016/S2214-109X(15)00100-X – volume: 18 start-page: 779 year: 2018 ident: 1025_CR30 publication-title: Lancet Infect. Dis. doi: 10.1016/S1473-3099(18)30222-6 – volume: 11 start-page: 1189 year: 2022 ident: 1025_CR234 publication-title: Pathogens doi: 10.3390/pathogens11101189 – volume: 400 start-page: 1858 year: 2022 ident: 1025_CR207 publication-title: Lancet doi: 10.1016/S0140-6736(22)02078-5 – volume: 60 start-page: e02362 year: 2022 ident: 1025_CR195 publication-title: J. Clin. Microbiol. doi: 10.1128/jcm.02362-21 – volume: 61 start-page: 789 year: 2019 ident: 1025_CR141 publication-title: Am. J. Respir. Cell Mol. Biol. doi: 10.1165/rcmb.2019-0178LE – volume: 46 start-page: 279 year: 2014 ident: 1025_CR53 publication-title: Nat. Genet. doi: 10.1038/ng.2878 – volume: 6 start-page: 699 year: 2018 ident: 1025_CR201 publication-title: Lancet Respir. Med. doi: 10.1016/S2213-2600(18)30235-2 – ident: 1025_CR26 – ident: 1025_CR213 – volume: 15 year: 2018 ident: 1025_CR40 publication-title: PLoS Med. doi: 10.1371/journal.pmed.1002653 – volume: 16 year: 2016 ident: 1025_CR79 publication-title: BMC Infect. Dis. doi: 10.1186/s12879-016-1920-5 – ident: 1025_CR142 – volume: 387 start-page: 810 year: 2022 ident: 1025_CR205 publication-title: N. Engl. J. Med. doi: 10.1056/NEJMoa2119430 – volume: 152 start-page: 482 year: 2020 ident: 1025_CR158 publication-title: Indian J. Med. Res. doi: 10.4103/ijmr.IJMR_2557_19 – volume: 7 start-page: S197 year: 2019 ident: 1025_CR127 publication-title: Ann. Transl. Med. doi: 10.21037/atm.2019.07.28 – volume: 11 year: 2016 ident: 1025_CR63 publication-title: PLoS ONE doi: 10.1371/journal.pone.0146642 – volume: 10 start-page: 1034 year: 2022 ident: 1025_CR51 publication-title: Lancet Glob. Health doi: 10.1016/S2214-109X(22)00113-9 – volume: 208 start-page: 130 year: 2023 ident: 1025_CR224 publication-title: Am. J. Respir. Crit. Care Med. doi: 10.1164/rccm.202304-0670VP – volume: 11 year: 2016 ident: 1025_CR28 publication-title: PLoS ONE doi: 10.1371/journal.pone.0152933 – volume: 9 start-page: 42 year: 2019 ident: 1025_CR247 publication-title: Public Health Action doi: 10.5588/pha.18.0047 – volume: 205 start-page: 1214 year: 2022 ident: 1025_CR206 publication-title: Am. J. Respir. Crit. Care Med. doi: 10.1164/rccm.202107-1779OC – volume: 50 start-page: 1701354 year: 2017 ident: 1025_CR255 publication-title: Eur. Respir. J. doi: 10.1183/13993003.01354-2017 – volume: 51 start-page: 1055 year: 2007 ident: 1025_CR261 publication-title: Antimicrob. Agents Chemother. doi: 10.1128/AAC.01063-06 – volume: 8 start-page: 756 year: 2023 ident: 1025_CR252 publication-title: Nat. Microbiol. doi: 10.1038/s41564-023-01365-3 – year: 2021 ident: 1025_CR13 publication-title: medRxiv doi: 10.1101/2021.09.23.21263991 – volume: 10 year: 2020 ident: 1025_CR237 publication-title: BMJ Open doi: 10.1136/bmjopen-2019-033945 – volume: 15 year: 2024 ident: 1025_CR123 publication-title: Nat. Commun. doi: 10.1038/s41467-023-44325-5 – volume: 17 start-page: 210 year: 2022 ident: 1025_CR241 publication-title: Glob. Public Health doi: 10.1080/17441692.2020.1855460 – volume: 54 start-page: 1900982 year: 2019 ident: 1025_CR19 publication-title: Eur. Respir. J. doi: 10.1183/13993003.00982-2019 – volume: 69 start-page: 331 year: 2013 ident: 1025_CR119 publication-title: J. Antimicrob. Chemother. doi: 10.1093/jac/dkt358 – ident: 1025_CR21 – volume: 23 start-page: 666 year: 2016 ident: 1025_CR260 publication-title: Cell Chem. Biol. doi: 10.1016/j.chembiol.2016.05.011 – ident: 1025_CR219 – ident: 1025_CR271 – volume: 42 start-page: 1291 year: 2013 ident: 1025_CR81 publication-title: Eur. Respir. J. doi: 10.1183/09031936.00111812 – ident: 1025_CR159 – volume: 16 year: 2019 ident: 1025_CR33 publication-title: PLoS Med. doi: 10.1371/journal.pmed.1002754 – volume: 70 start-page: 1596 year: 2019 ident: 1025_CR29 publication-title: Clin. Infect. Dis. doi: 10.1093/cid/ciz491 – volume: 11 year: 2020 ident: 1025_CR268 publication-title: Nat. Commun. doi: 10.1038/s41467-020-15516-1 – volume: 22 start-page: 1042 year: 2022 ident: 1025_CR203 publication-title: Lancet Infect. Dis. doi: 10.1016/S1473-3099(21)00811-2 – volume: 280 start-page: 38942 year: 2005 ident: 1025_CR111 publication-title: J. Biol. Chem. doi: 10.1074/jbc.M505727200 – volume: 49 start-page: 427 year: 2009 ident: 1025_CR107 publication-title: Annu. Rev. Pharmacol. Toxicol. doi: 10.1146/annurev-pharmtox-061008-103123 – volume: 64 start-page: 1502 year: 2017 ident: 1025_CR144 publication-title: Clin. Infect. Dis. doi: 10.1093/cid/cix128 – volume: 10 year: 2020 ident: 1025_CR80 publication-title: Sci. Rep. doi: 10.1038/s41598-020-73759-w – volume: 27 start-page: 357 year: 2023 ident: 1025_CR223 publication-title: Int. J. Tuberc. Lung Dis. doi: 10.5588/ijtld.23.0031 – volume: 14 year: 2022 ident: 1025_CR69 publication-title: Genome Med. doi: 10.1186/s13073-022-01076-0 – ident: 1025_CR148 – volume: 194 start-page: 621 year: 2016 ident: 1025_CR118 publication-title: Am. J. Respir. Crit. Care Med. doi: 10.1164/rccm.201510-2091OC – volume: 59 start-page: e02314-20 year: 2021 ident: 1025_CR166 publication-title: J. Clin. Microbiol. doi: 10.1128/JCM.02314-20 – volume: 386 start-page: 93 year: 2022 ident: 1025_CR44 publication-title: N. Engl. J. Med. doi: 10.1056/NEJMc2103049 – volume: 22 start-page: 496 year: 2022 ident: 1025_CR45 publication-title: Lancet Infect. Dis. doi: 10.1016/S1473-3099(21)00470-9 – volume: 43 start-page: 356 year: 2019 ident: 1025_CR129 publication-title: EBioMedicine doi: 10.1016/j.ebiom.2019.04.016 – volume: 13 year: 2022 ident: 1025_CR130 publication-title: Nat. Commun. doi: 10.1038/s41467-022-31236-0 – volume: 18 year: 2022 ident: 1025_CR137 publication-title: PLoS Pathog. doi: 10.1371/journal.ppat.1010705 – volume: 54 start-page: 727 year: 2016 ident: 1025_CR128 publication-title: J. Clin. Microbiol. doi: 10.1128/JCM.02775-15 – volume: 382 start-page: 893 year: 2020 ident: 1025_CR197 publication-title: N. Engl. J. Med. doi: 10.1056/NEJMoa1901814 – volume: 40 start-page: msad131 year: 2023 ident: 1025_CR122 publication-title: Mol. Biol. Evol. doi: 10.1093/molbev/msad131 – ident: 1025_CR208 – volume: 2 year: 2017 ident: 1025_CR242 publication-title: BMJ Glob. Health doi: 10.1136/bmjgh-2017-000515 – volume: 13 start-page: 1320 year: 2009 ident: 1025_CR121 publication-title: Int. J. Tuberc. Lung Dis. – volume: 10 start-page: 216 year: 2019 ident: 1025_CR267 publication-title: Front. Microbiol. doi: 10.3389/fmicb.2019.00216 – volume: 56 start-page: e00009-18 year: 2018 ident: 1025_CR183 publication-title: J. Clin. Microbiol. doi: 10.1128/JCM.00009-18 – ident: 1025_CR231 – volume: 74 start-page: 882 year: 2019 ident: 1025_CR6 publication-title: Thorax doi: 10.1136/thoraxjnl-2018-211616 – ident: 1025_CR50 – volume: 14 year: 2022 ident: 1025_CR193 publication-title: Genome Med. doi: 10.1186/s13073-022-01054-6 – ident: 1025_CR27 – ident: 1025_CR143 – volume: 57 start-page: 6311 year: 2013 ident: 1025_CR270 publication-title: Antimicrob. Agents Chemother. doi: 10.1128/AAC.00905-13 – volume: 383 start-page: 424 year: 2014 ident: 1025_CR160 publication-title: Lancet doi: 10.1016/S0140-6736(13)62073-5 – volume: 41 start-page: 354 year: 2017 ident: 1025_CR105 publication-title: FEMS Microbiol. Rev. doi: 10.1093/femsre/fux011 – ident: 1025_CR214 – ident: 1025_CR220 – volume: 4 start-page: 49 year: 2016 ident: 1025_CR177 publication-title: Lancet Respir. Med. doi: 10.1016/S2213-2600(15)00466-X – volume: 45 start-page: 529 year: 2005 ident: 1025_CR8 publication-title: Annu. Rev. Pharmacol. Toxicol. doi: 10.1146/annurev.pharmtox.45.120403.100120 – volume: 56 start-page: 2000626 year: 2020 ident: 1025_CR94 publication-title: Eur. Respir. J. doi: 10.1183/13993003.00626-2020 – volume: 52 start-page: 1801528 year: 2018 ident: 1025_CR202 publication-title: Eur. Respir. J. doi: 10.1183/13993003.01528-2018 – volume: 4 start-page: dlac029 year: 2022 ident: 1025_CR48 publication-title: JAC Antimicrob. Resist. doi: 10.1093/jacamr/dlac029 – volume: 17 start-page: 479 year: 2019 ident: 1025_CR138 publication-title: Nat. Rev. Microbiol. doi: 10.1038/s41579-019-0218-1 – volume: 69 start-page: 1316 year: 2008 ident: 1025_CR262 publication-title: Mol. Microbiol. doi: 10.1111/j.1365-2958.2008.06365.x – volume: 19 year: 2018 ident: 1025_CR236 publication-title: Trials doi: 10.1186/s13063-018-3070-0 |
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