Deep residual inception encoder‐decoder network for amyloid PET harmonization
Introduction Multiple positron emission tomography (PET) tracers are available for amyloid imaging, posing a significant challenge to consensus interpretation and quantitative analysis. We accordingly developed and validated a deep learning model as a harmonization strategy. Method A Residual Incept...
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Published in | Alzheimer's & dementia Vol. 18; no. 12; pp. 2448 - 2457 |
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Main Authors | , , , , , , , , , , , , |
Format | Journal Article |
Language | English |
Published |
United States
John Wiley and Sons Inc
01.12.2022
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Subjects | |
Online Access | Get full text |
ISSN | 1552-5260 1552-5279 1552-5279 |
DOI | 10.1002/alz.12564 |
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Abstract | Introduction
Multiple positron emission tomography (PET) tracers are available for amyloid imaging, posing a significant challenge to consensus interpretation and quantitative analysis. We accordingly developed and validated a deep learning model as a harmonization strategy.
Method
A Residual Inception Encoder‐Decoder Neural Network was developed to harmonize images between amyloid PET image pairs made with Pittsburgh Compound‐B and florbetapir tracers. The model was trained using a dataset with 92 subjects with 10‐fold cross validation and its generalizability was further examined using an independent external dataset of 46 subjects.
Results
Significantly stronger between‐tracer correlations (P < .001) were observed after harmonization for both global amyloid burden indices and voxel‐wise measurements in the training cohort and the external testing cohort.
Discussion
We proposed and validated a novel encoder‐decoder based deep model to harmonize amyloid PET imaging data from different tracers. Further investigation is ongoing to improve the model and apply to additional tracers. |
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AbstractList | Introduction
Multiple positron emission tomography (PET) tracers are available for amyloid imaging, posing a significant challenge to consensus interpretation and quantitative analysis. We accordingly developed and validated a deep learning model as a harmonization strategy.
Method
A Residual Inception Encoder‐Decoder Neural Network was developed to harmonize images between amyloid PET image pairs made with Pittsburgh Compound‐B and florbetapir tracers. The model was trained using a dataset with 92 subjects with 10‐fold cross validation and its generalizability was further examined using an independent external dataset of 46 subjects.
Results
Significantly stronger between‐tracer correlations (P < .001) were observed after harmonization for both global amyloid burden indices and voxel‐wise measurements in the training cohort and the external testing cohort.
Discussion
We proposed and validated a novel encoder‐decoder based deep model to harmonize amyloid PET imaging data from different tracers. Further investigation is ongoing to improve the model and apply to additional tracers. Multiple positron emission tomography (PET) tracers are available for amyloid imaging, posing a significant challenge to consensus interpretation and quantitative analysis. We accordingly developed and validated a deep learning model as a harmonization strategy. A Residual Inception Encoder-Decoder Neural Network was developed to harmonize images between amyloid PET image pairs made with Pittsburgh Compound-B and florbetapir tracers. The model was trained using a dataset with 92 subjects with 10-fold cross validation and its generalizability was further examined using an independent external dataset of 46 subjects. Significantly stronger between-tracer correlations (P < .001) were observed after harmonization for both global amyloid burden indices and voxel-wise measurements in the training cohort and the external testing cohort. We proposed and validated a novel encoder-decoder based deep model to harmonize amyloid PET imaging data from different tracers. Further investigation is ongoing to improve the model and apply to additional tracers. Multiple positron emission tomography (PET) tracers are available for amyloid imaging, posing a significant challenge to consensus interpretation and quantitative analysis. We accordingly developed and validated a deep learning model as a harmonization strategy.INTRODUCTIONMultiple positron emission tomography (PET) tracers are available for amyloid imaging, posing a significant challenge to consensus interpretation and quantitative analysis. We accordingly developed and validated a deep learning model as a harmonization strategy.A Residual Inception Encoder-Decoder Neural Network was developed to harmonize images between amyloid PET image pairs made with Pittsburgh Compound-B and florbetapir tracers. The model was trained using a dataset with 92 subjects with 10-fold cross validation and its generalizability was further examined using an independent external dataset of 46 subjects.METHODA Residual Inception Encoder-Decoder Neural Network was developed to harmonize images between amyloid PET image pairs made with Pittsburgh Compound-B and florbetapir tracers. The model was trained using a dataset with 92 subjects with 10-fold cross validation and its generalizability was further examined using an independent external dataset of 46 subjects.Significantly stronger between-tracer correlations (P < .001) were observed after harmonization for both global amyloid burden indices and voxel-wise measurements in the training cohort and the external testing cohort.RESULTSSignificantly stronger between-tracer correlations (P < .001) were observed after harmonization for both global amyloid burden indices and voxel-wise measurements in the training cohort and the external testing cohort.We proposed and validated a novel encoder-decoder based deep model to harmonize amyloid PET imaging data from different tracers. Further investigation is ongoing to improve the model and apply to additional tracers.DISCUSSIONWe proposed and validated a novel encoder-decoder based deep model to harmonize amyloid PET imaging data from different tracers. Further investigation is ongoing to improve the model and apply to additional tracers. |
Author | Su, Yi Ghisays, Valentina Shah, Jay Luo, Ji Chen, Kewei Benzinger, Tammie L.S. Gao, Fei Chen, Yinghua Reiman, Eric M. Wu, Teresa Zhou, Yuxiang Li, Baoxin Lee, Wendy |
AuthorAffiliation | 5 Mallinckrodt Institute of Radiology Washington University School of Medicine in St. Louis 510 South Kingshighway Boulevard St. Louis Missouri 63110 USA 1 ASU‐Mayo Center for Innovative Imaging Arizona State University 699 S. Mill Ave. Tempe Arizona 85287 USA 4 Department of Radiology Mayo Clinic at Arizona 5777 E Mayo Blvd Phoenix Arizona 85054 USA 2 School of Computing and Augmented Intelligence Arizona State University 699 S. Mill Ave. Tempe Arizona 85287 USA 3 Banner Alzheimer's Institute 901 E. Willetta Street Phoenix Arizona 85006 USA |
AuthorAffiliation_xml | – name: 2 School of Computing and Augmented Intelligence Arizona State University 699 S. Mill Ave. Tempe Arizona 85287 USA – name: 4 Department of Radiology Mayo Clinic at Arizona 5777 E Mayo Blvd Phoenix Arizona 85054 USA – name: 5 Mallinckrodt Institute of Radiology Washington University School of Medicine in St. Louis 510 South Kingshighway Boulevard St. Louis Missouri 63110 USA – name: 1 ASU‐Mayo Center for Innovative Imaging Arizona State University 699 S. Mill Ave. Tempe Arizona 85287 USA – name: 3 Banner Alzheimer's Institute 901 E. Willetta Street Phoenix Arizona 85006 USA |
Author_xml | – sequence: 1 givenname: Jay orcidid: 0000-0002-3617-2395 surname: Shah fullname: Shah, Jay organization: Arizona State University – sequence: 2 givenname: Fei surname: Gao fullname: Gao, Fei organization: Arizona State University – sequence: 3 givenname: Baoxin surname: Li fullname: Li, Baoxin organization: Arizona State University – sequence: 4 givenname: Valentina surname: Ghisays fullname: Ghisays, Valentina organization: Banner Alzheimer's Institute – sequence: 5 givenname: Ji surname: Luo fullname: Luo, Ji organization: Banner Alzheimer's Institute – sequence: 6 givenname: Yinghua surname: Chen fullname: Chen, Yinghua organization: Banner Alzheimer's Institute – sequence: 7 givenname: Wendy surname: Lee fullname: Lee, Wendy organization: Banner Alzheimer's Institute – sequence: 8 givenname: Yuxiang surname: Zhou fullname: Zhou, Yuxiang organization: Mayo Clinic at Arizona – sequence: 9 givenname: Tammie L.S. surname: Benzinger fullname: Benzinger, Tammie L.S. organization: Washington University School of Medicine in St. Louis – sequence: 10 givenname: Eric M. surname: Reiman fullname: Reiman, Eric M. organization: Banner Alzheimer's Institute – sequence: 11 givenname: Kewei surname: Chen fullname: Chen, Kewei organization: Banner Alzheimer's Institute – sequence: 12 givenname: Yi surname: Su fullname: Su, Yi email: yi.su@bannerhealth.com organization: Banner Alzheimer's Institute – sequence: 13 givenname: Teresa surname: Wu fullname: Wu, Teresa organization: Arizona State University |
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Snippet | Introduction
Multiple positron emission tomography (PET) tracers are available for amyloid imaging, posing a significant challenge to consensus interpretation... Multiple positron emission tomography (PET) tracers are available for amyloid imaging, posing a significant challenge to consensus interpretation and... |
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SubjectTerms | Alzheimer Disease - diagnostic imaging Alzheimer's disease Amyloid - metabolism amyloid PET Amyloidogenic Proteins Aniline Compounds Brain - diagnostic imaging Brain - metabolism Centiloid Humans Positron-Emission Tomography - methods Radiopharmaceuticals |
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Title | Deep residual inception encoder‐decoder network for amyloid PET harmonization |
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