A reporting format for field measurements of soil respiration

Field observations of the soil-to-atmosphere CO2 flux—soil respiration, RS—are a prime example of ‘long tail’ data that historically have had neither centralized databases nor an agreed-upon reporting format. This has hindered scientific transparency, analytical reproducibility, and syntheses with r...

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Published inEcological informatics Vol. 62; no. C; p. 101280
Main Authors Bond-Lamberty, Ben, Christianson, Danielle S., Crystal-Ornelas, Robert, Mathes, Kayla, Pennington, Stephanie C.
Format Journal Article
LanguageEnglish
Published Netherlands Elsevier B.V 01.05.2021
Elsevier
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Online AccessGet full text
ISSN1574-9541
1878-0512
DOI10.1016/j.ecoinf.2021.101280

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Abstract Field observations of the soil-to-atmosphere CO2 flux—soil respiration, RS—are a prime example of ‘long tail’ data that historically have had neither centralized databases nor an agreed-upon reporting format. This has hindered scientific transparency, analytical reproducibility, and syntheses with respect to this globally-important component of the carbon cycle. Here we propose a new data and metadata reporting format for RS data, based on engagement with a wide range of researchers in the earth and ecological sciences as well as expert advisory panels. Our goal was a reporting format that would be relevant and useful for synthesis activities, optimizing data discoverability and usability while not placing an undue burden on data contributors. We describe previous RS data collection efforts, lessons learned from related databases and data-oriented networks (e.g., FLUXNET) in earth and ecological sciences, and the process of community consultation. The proposed reporting format focuses on chamber-level data and metadata, specifying measurement conditions and, for a given measurement period defined by beginning and ending timestamps, a mean RS flux (or CO2 concentration) and associated ancillary measurements. With input from the research community, we have also developed research data and metadata templates to support data collection adhering to the reporting format. Fundamentally, this format aims to enable findable, accessible, interoperable, and reusable data, while providing ‘future-proofing’ capabilities to support reanalyses using as yet unknown algorithms or approaches. This proposed RS reporting format is openly available online and is intended to be a dynamic document, subject to further community feedback and/or change. •We propose a new data and metadata reporting format for soil respiration (RS) data.•The proposed reporting format focuses on chamber-level data and metadata.•Considerable input from the research community shaped this format.•This proposed format is openly available online.
AbstractList Field observations of the soil-to-atmosphere CO2 flux—soil respiration, RS—are a prime example of ‘long tail’ data that historically have had neither centralized databases nor an agreed-upon reporting format. This has hindered scientific transparency, analytical reproducibility, and syntheses with respect to this globally-important component of the carbon cycle. Here we propose a new data and metadata reporting format for RS data, based on engagement with a wide range of researchers in the earth and ecological sciences as well as expert advisory panels. Our goal was a reporting format that would be relevant and useful for synthesis activities, optimizing data discoverability and usability while not placing an undue burden on data contributors. We describe previous RS data collection efforts, lessons learned from related databases and data-oriented networks (e.g., FLUXNET) in earth and ecological sciences, and the process of community consultation. The proposed reporting format focuses on chamber-level data and metadata, specifying measurement conditions and, for a given measurement period defined by beginning and ending timestamps, a mean RS flux (or CO2 concentration) and associated ancillary measurements. With input from the research community, we have also developed research data and metadata templates to support data collection adhering to the reporting format. Fundamentally, this format aims to enable findable, accessible, interoperable, and reusable data, while providing ‘future-proofing’ capabilities to support reanalyses using as yet unknown algorithms or approaches. This proposed RS reporting format is openly available online and is intended to be a dynamic document, subject to further community feedback and/or change. •We propose a new data and metadata reporting format for soil respiration (RS) data.•The proposed reporting format focuses on chamber-level data and metadata.•Considerable input from the research community shaped this format.•This proposed format is openly available online.
Field observations of the soil-to-atmosphere CO₂ flux—soil respiration, RS—are a prime example of ‘long tail’ data that historically have had neither centralized databases nor an agreed-upon reporting format. This has hindered scientific transparency, analytical reproducibility, and syntheses with respect to this globally-important component of the carbon cycle. Here we propose a new data and metadata reporting format for RS data, based on engagement with a wide range of researchers in the earth and ecological sciences as well as expert advisory panels. Our goal was a reporting format that would be relevant and useful for synthesis activities, optimizing data discoverability and usability while not placing an undue burden on data contributors. We describe previous RS data collection efforts, lessons learned from related databases and data-oriented networks (e.g., FLUXNET) in earth and ecological sciences, and the process of community consultation. The proposed reporting format focuses on chamber-level data and metadata, specifying measurement conditions and, for a given measurement period defined by beginning and ending timestamps, a mean RS flux (or CO₂ concentration) and associated ancillary measurements. With input from the research community, we have also developed research data and metadata templates to support data collection adhering to the reporting format. Fundamentally, this format aims to enable findable, accessible, interoperable, and reusable data, while providing ‘future-proofing’ capabilities to support reanalyses using as yet unknown algorithms or approaches. This proposed RS reporting format is openly available online and is intended to be a dynamic document, subject to further community feedback and/or change.
ArticleNumber 101280
Author Christianson, Danielle S.
Pennington, Stephanie C.
Mathes, Kayla
Bond-Lamberty, Ben
Crystal-Ornelas, Robert
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Issue C
Keywords Metadata
Data reporting format
Soil respiration
Data standard
FAIR data
Soil gas flux
Language English
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Snippet Field observations of the soil-to-atmosphere CO2 flux—soil respiration, RS—are a prime example of ‘long tail’ data that historically have had neither...
Field observations of the soil-to-atmosphere CO₂ flux—soil respiration, RS—are a prime example of ‘long tail’ data that historically have had neither...
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StartPage 101280
SubjectTerms carbon cycle
carbon dioxide
data collection
Data reporting format
Data standard
FAIR data
Metadata
Soil gas flux
Soil respiration
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Title A reporting format for field measurements of soil respiration
URI https://dx.doi.org/10.1016/j.ecoinf.2021.101280
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