External validation of radiomics‐based predictive models in low‐dose CT screening for early lung cancer diagnosis
Purpose Low‐dose CT screening allows early lung cancer detection, but is affected by frequent false positive results, inter/intra observer variation and uncertain diagnoses of lung nodules. Radiomics‐based models have recently been introduced to overcome these issues, but limitations in demonstratin...
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Published in | Medical physics (Lancaster) Vol. 47; no. 9; pp. 4125 - 4136 |
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Main Authors | , , , , , , , , , |
Format | Journal Article |
Language | English |
Published |
United States
01.09.2020
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Subjects | |
Online Access | Get full text |
ISSN | 0094-2405 2473-4209 1522-8541 2473-4209 |
DOI | 10.1002/mp.14308 |
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Abstract | Purpose
Low‐dose CT screening allows early lung cancer detection, but is affected by frequent false positive results, inter/intra observer variation and uncertain diagnoses of lung nodules. Radiomics‐based models have recently been introduced to overcome these issues, but limitations in demonstrating their generalizability on independent datasets are slowing their introduction to clinic. The aim of this study is to evaluate two radiomics‐based models to classify malignant pulmonary nodules in low‐dose CT screening, and to externally validate them on an independent cohort. The effect of a radiomics features harmonization technique is also investigated to evaluate its impact on the classification of lung nodules from a multicenter data.
Methods
Pulmonary nodules from two independent cohorts were considered in this study; the first cohort (110 subjects, 113 nodules) was used to train prediction models, and the second cohort (72 nodules) to externally validate them. Literature‐based radiomics features were extracted and, after feature selection, used as predictive variables in models for malignancy identification. An in‐house prediction model based on artificial neural network (ANN) was implemented and evaluated, along with an alternative model from the literature, based on a support vector machine (SVM) classifier coupled with a least absolute shrinkage and selection operator (LASSO). External validation was performed on the second cohort to evaluate models’ generalization ability. Additionally, the impact of the Combat harmonization method was investigated to compensate for multicenter datasets variabilities. A new training of the models based on harmonized features was performed on the first cohort, then tested separately on the harmonized and non‐harmonized features of the second cohort.
Results
Preliminary results showed a good accuracy of the investigated models in distinguishing benign from malignant pulmonary nodules with both sets of radiomics features (i.e., non‐harmonized and harmonized). The performance of the models, quantified in terms of Area Under the Curve (AUC), was > 0.89 in the training set and > 0.82 in the external validation set for all the investigated scenarios, outperforming the clinical standard (AUC of 0.76). Slightly higher performance was observed for the SVM‐LASSO model than the ANN in the external dataset, although they did not result significantly different. For both harmonized and non‐harmonized features, no statistical difference was found between Receiver operating characteristic (ROC) curves related to training and test set for both models.
Conclusions
Although no significant improvements were observed when applying the Combat harmonization method, both in‐house and literature‐based models were able to classify lung nodules with good generalization to an independent dataset, thus showing their potential as tools for clinical decision‐making in lung cancer screening. |
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AbstractList | Purpose
Low‐dose CT screening allows early lung cancer detection, but is affected by frequent false positive results, inter/intra observer variation and uncertain diagnoses of lung nodules. Radiomics‐based models have recently been introduced to overcome these issues, but limitations in demonstrating their generalizability on independent datasets are slowing their introduction to clinic. The aim of this study is to evaluate two radiomics‐based models to classify malignant pulmonary nodules in low‐dose CT screening, and to externally validate them on an independent cohort. The effect of a radiomics features harmonization technique is also investigated to evaluate its impact on the classification of lung nodules from a multicenter data.
Methods
Pulmonary nodules from two independent cohorts were considered in this study; the first cohort (110 subjects, 113 nodules) was used to train prediction models, and the second cohort (72 nodules) to externally validate them. Literature‐based radiomics features were extracted and, after feature selection, used as predictive variables in models for malignancy identification. An in‐house prediction model based on artificial neural network (ANN) was implemented and evaluated, along with an alternative model from the literature, based on a support vector machine (SVM) classifier coupled with a least absolute shrinkage and selection operator (LASSO). External validation was performed on the second cohort to evaluate models’ generalization ability. Additionally, the impact of the Combat harmonization method was investigated to compensate for multicenter datasets variabilities. A new training of the models based on harmonized features was performed on the first cohort, then tested separately on the harmonized and non‐harmonized features of the second cohort.
Results
Preliminary results showed a good accuracy of the investigated models in distinguishing benign from malignant pulmonary nodules with both sets of radiomics features (i.e., non‐harmonized and harmonized). The performance of the models, quantified in terms of Area Under the Curve (AUC), was > 0.89 in the training set and > 0.82 in the external validation set for all the investigated scenarios, outperforming the clinical standard (AUC of 0.76). Slightly higher performance was observed for the SVM‐LASSO model than the ANN in the external dataset, although they did not result significantly different. For both harmonized and non‐harmonized features, no statistical difference was found between Receiver operating characteristic (ROC) curves related to training and test set for both models.
Conclusions
Although no significant improvements were observed when applying the Combat harmonization method, both in‐house and literature‐based models were able to classify lung nodules with good generalization to an independent dataset, thus showing their potential as tools for clinical decision‐making in lung cancer screening. Low-dose CT screening allows early lung cancer detection, but is affected by frequent false positive results, inter/intra observer variation and uncertain diagnoses of lung nodules. Radiomics-based models have recently been introduced to overcome these issues, but limitations in demonstrating their generalizability on independent datasets are slowing their introduction to clinic. The aim of this study is to evaluate two radiomics-based models to classify malignant pulmonary nodules in low-dose CT screening, and to externally validate them on an independent cohort. The effect of a radiomics features harmonization technique is also investigated to evaluate its impact on the classification of lung nodules from a multicenter data. Pulmonary nodules from two independent cohorts were considered in this study; the first cohort (110 subjects, 113 nodules) was used to train prediction models, and the second cohort (72 nodules) to externally validate them. Literature-based radiomics features were extracted and, after feature selection, used as predictive variables in models for malignancy identification. An in-house prediction model based on artificial neural network (ANN) was implemented and evaluated, along with an alternative model from the literature, based on a support vector machine (SVM) classifier coupled with a least absolute shrinkage and selection operator (LASSO). External validation was performed on the second cohort to evaluate models' generalization ability. Additionally, the impact of the Combat harmonization method was investigated to compensate for multicenter datasets variabilities. A new training of the models based on harmonized features was performed on the first cohort, then tested separately on the harmonized and non-harmonized features of the second cohort. Preliminary results showed a good accuracy of the investigated models in distinguishing benign from malignant pulmonary nodules with both sets of radiomics features (i.e., non-harmonized and harmonized). The performance of the models, quantified in terms of Area Under the Curve (AUC), was > 0.89 in the training set and > 0.82 in the external validation set for all the investigated scenarios, outperforming the clinical standard (AUC of 0.76). Slightly higher performance was observed for the SVM-LASSO model than the ANN in the external dataset, although they did not result significantly different. For both harmonized and non-harmonized features, no statistical difference was found between Receiver operating characteristic (ROC) curves related to training and test set for both models. Although no significant improvements were observed when applying the Combat harmonization method, both in-house and literature-based models were able to classify lung nodules with good generalization to an independent dataset, thus showing their potential as tools for clinical decision-making in lung cancer screening. Low-dose CT screening allows early lung cancer detection, but is affected by frequent false positive results, inter/intra observer variation and uncertain diagnoses of lung nodules. Radiomics-based models have recently been introduced to overcome these issues, but limitations in demonstrating their generalizability on independent datasets are slowing their introduction to clinic. The aim of this study is to evaluate two radiomics-based models to classify malignant pulmonary nodules in low-dose CT screening, and to externally validate them on an independent cohort. The effect of a radiomics features harmonization technique is also investigated to evaluate its impact on the classification of lung nodules from a multicenter data.PURPOSELow-dose CT screening allows early lung cancer detection, but is affected by frequent false positive results, inter/intra observer variation and uncertain diagnoses of lung nodules. Radiomics-based models have recently been introduced to overcome these issues, but limitations in demonstrating their generalizability on independent datasets are slowing their introduction to clinic. The aim of this study is to evaluate two radiomics-based models to classify malignant pulmonary nodules in low-dose CT screening, and to externally validate them on an independent cohort. The effect of a radiomics features harmonization technique is also investigated to evaluate its impact on the classification of lung nodules from a multicenter data.Pulmonary nodules from two independent cohorts were considered in this study; the first cohort (110 subjects, 113 nodules) was used to train prediction models, and the second cohort (72 nodules) to externally validate them. Literature-based radiomics features were extracted and, after feature selection, used as predictive variables in models for malignancy identification. An in-house prediction model based on artificial neural network (ANN) was implemented and evaluated, along with an alternative model from the literature, based on a support vector machine (SVM) classifier coupled with a least absolute shrinkage and selection operator (LASSO). External validation was performed on the second cohort to evaluate models' generalization ability. Additionally, the impact of the Combat harmonization method was investigated to compensate for multicenter datasets variabilities. A new training of the models based on harmonized features was performed on the first cohort, then tested separately on the harmonized and non-harmonized features of the second cohort.METHODSPulmonary nodules from two independent cohorts were considered in this study; the first cohort (110 subjects, 113 nodules) was used to train prediction models, and the second cohort (72 nodules) to externally validate them. Literature-based radiomics features were extracted and, after feature selection, used as predictive variables in models for malignancy identification. An in-house prediction model based on artificial neural network (ANN) was implemented and evaluated, along with an alternative model from the literature, based on a support vector machine (SVM) classifier coupled with a least absolute shrinkage and selection operator (LASSO). External validation was performed on the second cohort to evaluate models' generalization ability. Additionally, the impact of the Combat harmonization method was investigated to compensate for multicenter datasets variabilities. A new training of the models based on harmonized features was performed on the first cohort, then tested separately on the harmonized and non-harmonized features of the second cohort.Preliminary results showed a good accuracy of the investigated models in distinguishing benign from malignant pulmonary nodules with both sets of radiomics features (i.e., non-harmonized and harmonized). The performance of the models, quantified in terms of Area Under the Curve (AUC), was > 0.89 in the training set and > 0.82 in the external validation set for all the investigated scenarios, outperforming the clinical standard (AUC of 0.76). Slightly higher performance was observed for the SVM-LASSO model than the ANN in the external dataset, although they did not result significantly different. For both harmonized and non-harmonized features, no statistical difference was found between Receiver operating characteristic (ROC) curves related to training and test set for both models.RESULTSPreliminary results showed a good accuracy of the investigated models in distinguishing benign from malignant pulmonary nodules with both sets of radiomics features (i.e., non-harmonized and harmonized). The performance of the models, quantified in terms of Area Under the Curve (AUC), was > 0.89 in the training set and > 0.82 in the external validation set for all the investigated scenarios, outperforming the clinical standard (AUC of 0.76). Slightly higher performance was observed for the SVM-LASSO model than the ANN in the external dataset, although they did not result significantly different. For both harmonized and non-harmonized features, no statistical difference was found between Receiver operating characteristic (ROC) curves related to training and test set for both models.Although no significant improvements were observed when applying the Combat harmonization method, both in-house and literature-based models were able to classify lung nodules with good generalization to an independent dataset, thus showing their potential as tools for clinical decision-making in lung cancer screening.CONCLUSIONSAlthough no significant improvements were observed when applying the Combat harmonization method, both in-house and literature-based models were able to classify lung nodules with good generalization to an independent dataset, thus showing their potential as tools for clinical decision-making in lung cancer screening. |
Author | Summers, Paul Lu, Wei Garau, Noemi Choi, Wookjin Paganelli, Chiara Bellomi, Massimo Fanciullo, Cristiana Alam, Sadegh Rampinelli, Cristiano Baroni, Guido |
AuthorAffiliation | 1 Dipartimento di Elettronica, Informazione e Bioingegneria, Politecnico di Milano, Milano, Italy 3 Department of Engineering and Computer Science, Virginia State University, Petersburg, VA 2 Division of Radiology, IEO, European Institute of Oncology IRCCS, Milan, Italy 5 Postgraduate School of Diagnostic and Interventional Radiology, University of Milan, Milan, Italy 6 Department of Oncology and Hemato-oncology, University of Milan, Milan, Italy 4 Department of Medical Physics, Memorial Sloan Kettering Cancer Center, New York, USA 7 Bioengineering Unit, CNAO Foundation, Pavia, Italy |
AuthorAffiliation_xml | – name: 4 Department of Medical Physics, Memorial Sloan Kettering Cancer Center, New York, USA – name: 7 Bioengineering Unit, CNAO Foundation, Pavia, Italy – name: 5 Postgraduate School of Diagnostic and Interventional Radiology, University of Milan, Milan, Italy – name: 6 Department of Oncology and Hemato-oncology, University of Milan, Milan, Italy – name: 1 Dipartimento di Elettronica, Informazione e Bioingegneria, Politecnico di Milano, Milano, Italy – name: 3 Department of Engineering and Computer Science, Virginia State University, Petersburg, VA – name: 2 Division of Radiology, IEO, European Institute of Oncology IRCCS, Milan, Italy |
Author_xml | – sequence: 1 givenname: Noemi surname: Garau fullname: Garau, Noemi email: noemi.garau@polimi.it organization: European Institute of Oncology IRCCS – sequence: 2 givenname: Chiara surname: Paganelli fullname: Paganelli, Chiara organization: Politecnico di Milano – sequence: 3 givenname: Paul surname: Summers fullname: Summers, Paul organization: European Institute of Oncology IRCCS – sequence: 4 givenname: Wookjin surname: Choi fullname: Choi, Wookjin organization: Virginia State University – sequence: 5 givenname: Sadegh surname: Alam fullname: Alam, Sadegh organization: Memorial Sloan Kettering Cancer Center – sequence: 6 givenname: Wei surname: Lu fullname: Lu, Wei organization: Memorial Sloan Kettering Cancer Center – sequence: 7 givenname: Cristiana surname: Fanciullo fullname: Fanciullo, Cristiana organization: University of Milan – sequence: 8 givenname: Massimo surname: Bellomi fullname: Bellomi, Massimo organization: University of Milan – sequence: 9 givenname: Guido surname: Baroni fullname: Baroni, Guido organization: CNAO Foundation – sequence: 10 givenname: Cristiano surname: Rampinelli fullname: Rampinelli, Cristiano organization: European Institute of Oncology IRCCS |
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Low‐dose CT screening allows early lung cancer detection, but is affected by frequent false positive results, inter/intra observer variation and... Low-dose CT screening allows early lung cancer detection, but is affected by frequent false positive results, inter/intra observer variation and uncertain... |
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SubjectTerms | Early Detection of Cancer Humans low‐dose CT screening Lung Lung Neoplasms - diagnostic imaging lung nodules classification Multiple Pulmonary Nodules radiomics Tomography, X-Ray Computed |
Title | External validation of radiomics‐based predictive models in low‐dose CT screening for early lung cancer diagnosis |
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