On the marginal likelihood and cross-validation

• Published in: Biometrika Vol. 107; no. 2; pp. 489 - 496
• Main Authors: Fong, E, Holmes, C C
• Format: Journal Article
• Language: English
• Published: Oxford Oxford University Press 01.06.2020; Oxford Publishing Limited (England)
• Subjects: Bayesian analysis; Mathematical models; Statistical analysis; Test sets; cross-validation; Prequential scoring; Marginal likelihood
• ISSN: 0006-3444; 1464-3510; 1464-3510
• DOI: 10.1093/biomet/asz077

Summary In Bayesian statistics, the marginal likelihood, also known as the evidence, is used to evaluate model fit as it quantifies the joint probability of the data under the prior. In contrast, non-Bayesian models are typically compared using cross-validation on held-out data, either through $k$-fold partitioning or leave-$p$-out subsampling. We show that the marginal likelihood is formally equivalent to exhaustive leave-$p$-out crossvalidation averaged over all values of $p$ and all held-out test sets when using the log posterior predictive probability as the scoring rule. Moreover, the log posterior predictive score is the only coherent scoring rule under data exchangeability. This offers new insight into the marginal likelihood and cross-validation, and highlights the potential sensitivity of the marginal likelihood to the choice of the prior. We suggest an alternative approach using cumulative cross-validation following a preparatory training phase. Our work has connections to prequential analysis and intrinsic Bayes factors, but is motivated in a different way.