STAVER: a standardized benchmark dataset-based algorithm for effective variation reduction in large-scale DIA-MS data - Ran, Peng; Wang, Yunzhi; Li, Kai; He, Shiman; Tan, Subei; Lv, Jiacheng; Zhu, Jiajun; Tang, Shaoshuai; Feng, Jinwen; Qin, Zhaoyu; Li, Yan; Huang, Lin; et al. (Briefings in bioinformatics, 2024)
Keywords: Algorithms; Benchmarking - methods; Benchmarks; Comparative analysis; Databases, Protein; Datasets; Humans; Mass spectrometry; Mass Spectrometry - methods; Mass Spectrometry - standards; Mass spectroscopy; Problem Solving Protocol; Proteins; Proteomics; Proteomics - methods; Proteomics - standards; Reproducibility of Results; Software; STAVER algorithm; non-biological noise; quantitative proteomics; bioinformatics; data-independent acquisition; proteomics analysis