Identification of bioinformatic pipelines for virus monitoring using nanopore sequence data: A systematic assessment - Kaiser, Nick Laurenz; Groschup, Martin H.; Sadeghi, Balal (Journal of virological methods, 2025)
Keywords: Bioinformatics; Computational Biology - methods; domain; High-Throughput Nucleotide Sequencing - methods; Humans; monitoring; Nanopore sequencing; Nanopore Sequencing - methods; Nanopores; Pipeline; Sequence analysis; Third-generation sequencing; Virus surveillance; viruses; Viruses - classification; Viruses - genetics; Viruses - isolation & purification; Virus surveillance; ONT; Nanopore sequencing; PRISMA; Third-generation sequencing; NGS; Bioinformatics; Sequence analysis; WNV; Pipeline