Root-associated bacteria strengthen their community stability against disturbance of antibiotics on structure and functions
Antibiotics affect bacterial community structure and functions in soil. However, the response and adaptation of root-associated bacterial communities to antibiotic stress remains poorly understood. Here, rhizobox experiments were conducted with maize (Zea mays L.) upon exposure to antibiotics ciprof...
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| Published in | Journal of hazardous materials Vol. 465; p. 133317 |
|---|---|
| Main Authors | , , , , , , , , , , |
| Format | Journal Article |
| Language | English |
| Published |
Netherlands
Elsevier B.V
05.03.2024
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| Subjects | |
| Online Access | Get full text |
| ISSN | 0304-3894 1873-3336 1873-3336 |
| DOI | 10.1016/j.jhazmat.2023.133317 |
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| Abstract | Antibiotics affect bacterial community structure and functions in soil. However, the response and adaptation of root-associated bacterial communities to antibiotic stress remains poorly understood. Here, rhizobox experiments were conducted with maize (Zea mays L.) upon exposure to antibiotics ciprofloxacin or tetracycline. High-throughput sequencing analysis of bacterial community and quantitative PCR analysis of nitrogen cycling genes show that ciprofloxacin and tetracycline significantly shift bacterial community structure in bulk soil, whereas plant host may mitigate the disturbances of antibiotics on bacterial communities in root-associated niches (i.e., rhizosphere and rhizoplane) through the community stabilization. Deterministic assembly, microbial interaction, and keystone species (e.g., Rhizobium and Massilia) of root-associated bacterial communities benefit the community stability compared with those in bulk soil. Meanwhile, the rhizosphere increases antibiotic dissipation, potentially reducing the impacts of antibiotics on root-associated bacterial communities. Furthermore, rhizospheric effects deriving from root exudates alleviate the impacts of antibiotics on the nitrogen cycle (i.e., nitrification, organic nitrogen conversion and denitrification) as confirmed by functional gene quantification, which is largely attributed to the bacterial community stability in rhizosphere. The present study enhances the understanding on the response and adaptation of root-associated bacterial community to antibiotic pollution.
[Display omitted]
•Antibiotics disturb structure and functions of soil bacterial community.•Responses of bacterial community to antibiotics vary between soil and root niches.•Plants mitigate disturbance of antibiotics on root-associated bacterial community.•Rhizosphere mitigates effects of antibiotics on nitrification and denitrification.•Root-associated bacteria strengthen community stability against antibiotic stress. |
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| AbstractList | Antibiotics affect bacterial community structure and functions in soil. However, the response and adaptation of root-associated bacterial communities to antibiotic stress remains poorly understood. Here, rhizobox experiments were conducted with maize (Zea mays L.) upon exposure to antibiotics ciprofloxacin or tetracycline. High-throughput sequencing analysis of bacterial community and quantitative PCR analysis of nitrogen cycling genes show that ciprofloxacin and tetracycline significantly shift bacterial community structure in bulk soil, whereas plant host may mitigate the disturbances of antibiotics on bacterial communities in root-associated niches (i.e., rhizosphere and rhizoplane) through the community stabilization. Deterministic assembly, microbial interaction, and keystone species (e.g., Rhizobium and Massilia) of root-associated bacterial communities benefit the community stability compared with those in bulk soil. Meanwhile, the rhizosphere increases antibiotic dissipation, potentially reducing the impacts of antibiotics on root-associated bacterial communities. Furthermore, rhizospheric effects deriving from root exudates alleviate the impacts of antibiotics on the nitrogen cycle (i.e., nitrification, organic nitrogen conversion and denitrification) as confirmed by functional gene quantification, which is largely attributed to the bacterial community stability in rhizosphere. The present study enhances the understanding on the response and adaptation of root-associated bacterial community to antibiotic pollution.Antibiotics affect bacterial community structure and functions in soil. However, the response and adaptation of root-associated bacterial communities to antibiotic stress remains poorly understood. Here, rhizobox experiments were conducted with maize (Zea mays L.) upon exposure to antibiotics ciprofloxacin or tetracycline. High-throughput sequencing analysis of bacterial community and quantitative PCR analysis of nitrogen cycling genes show that ciprofloxacin and tetracycline significantly shift bacterial community structure in bulk soil, whereas plant host may mitigate the disturbances of antibiotics on bacterial communities in root-associated niches (i.e., rhizosphere and rhizoplane) through the community stabilization. Deterministic assembly, microbial interaction, and keystone species (e.g., Rhizobium and Massilia) of root-associated bacterial communities benefit the community stability compared with those in bulk soil. Meanwhile, the rhizosphere increases antibiotic dissipation, potentially reducing the impacts of antibiotics on root-associated bacterial communities. Furthermore, rhizospheric effects deriving from root exudates alleviate the impacts of antibiotics on the nitrogen cycle (i.e., nitrification, organic nitrogen conversion and denitrification) as confirmed by functional gene quantification, which is largely attributed to the bacterial community stability in rhizosphere. The present study enhances the understanding on the response and adaptation of root-associated bacterial community to antibiotic pollution. Antibiotics affect bacterial community structure and functions in soil. However, the response and adaptation of root-associated bacterial communities to antibiotic stress remains poorly understood. Here, rhizobox experiments were conducted with maize (Zea mays L.) upon exposure to antibiotics ciprofloxacin or tetracycline. High-throughput sequencing analysis of bacterial community and quantitative PCR analysis of nitrogen cycling genes show that ciprofloxacin and tetracycline significantly shift bacterial community structure in bulk soil, whereas plant host may mitigate the disturbances of antibiotics on bacterial communities in root-associated niches (i.e., rhizosphere and rhizoplane) through the community stabilization. Deterministic assembly, microbial interaction, and keystone species (e.g., Rhizobium and Massilia) of root-associated bacterial communities benefit the community stability compared with those in bulk soil. Meanwhile, the rhizosphere increases antibiotic dissipation, potentially reducing the impacts of antibiotics on root-associated bacterial communities. Furthermore, rhizospheric effects deriving from root exudates alleviate the impacts of antibiotics on the nitrogen cycle (i.e., nitrification, organic nitrogen conversion and denitrification) as confirmed by functional gene quantification, which is largely attributed to the bacterial community stability in rhizosphere. The present study enhances the understanding on the response and adaptation of root-associated bacterial community to antibiotic pollution. Antibiotics affect bacterial community structure and functions in soil. However, the response and adaptation of root-associated bacterial communities to antibiotic stress remains poorly understood. Here, rhizobox experiments were conducted with maize (Zea mays L.) upon exposure to antibiotics ciprofloxacin or tetracycline. High-throughput sequencing analysis of bacterial community and quantitative PCR analysis of nitrogen cycling genes show that ciprofloxacin and tetracycline significantly shift bacterial community structure in bulk soil, whereas plant host may mitigate the disturbances of antibiotics on bacterial communities in root-associated niches (i.e., rhizosphere and rhizoplane) through the community stabilization. Deterministic assembly, microbial interaction, and keystone species (e.g., Rhizobium and Massilia) of root-associated bacterial communities benefit the community stability compared with those in bulk soil. Meanwhile, the rhizosphere increases antibiotic dissipation, potentially reducing the impacts of antibiotics on root-associated bacterial communities. Furthermore, rhizospheric effects deriving from root exudates alleviate the impacts of antibiotics on the nitrogen cycle (i.e., nitrification, organic nitrogen conversion and denitrification) as confirmed by functional gene quantification, which is largely attributed to the bacterial community stability in rhizosphere. The present study enhances the understanding on the response and adaptation of root-associated bacterial community to antibiotic pollution. [Display omitted] •Antibiotics disturb structure and functions of soil bacterial community.•Responses of bacterial community to antibiotics vary between soil and root niches.•Plants mitigate disturbance of antibiotics on root-associated bacterial community.•Rhizosphere mitigates effects of antibiotics on nitrification and denitrification.•Root-associated bacteria strengthen community stability against antibiotic stress. |
| ArticleNumber | 133317 |
| Author | Mo, Ce-Hui Li, Jie-Yu Zhao, Hai-Ming Li, Qing X. Cai, Quan-Ying Yang, Yu-Jie Li, Hui Li, Yan-Wen Huang, Yu-Hong Xiang, Lei Lü, Huixiong |
| Author_xml | – sequence: 1 givenname: Yu-Hong surname: Huang fullname: Huang, Yu-Hong organization: Guangdong Provincial Research Center for Environment Pollution Control and Remediation Materials, College of Life Science and Technology, Jinan University, Guangzhou 510632, China – sequence: 2 givenname: Yu-Jie surname: Yang fullname: Yang, Yu-Jie organization: Guangdong Provincial Research Center for Environment Pollution Control and Remediation Materials, College of Life Science and Technology, Jinan University, Guangzhou 510632, China – sequence: 3 givenname: Jie-Yu surname: Li fullname: Li, Jie-Yu organization: Guangdong Provincial Research Center for Environment Pollution Control and Remediation Materials, College of Life Science and Technology, Jinan University, Guangzhou 510632, China – sequence: 4 givenname: Huixiong surname: Lü fullname: Lü, Huixiong organization: College of Natural Resources and Environment, South China Agricultural University, Guangzhou 510642, China – sequence: 5 givenname: Hai-Ming surname: Zhao fullname: Zhao, Hai-Ming organization: Guangdong Provincial Research Center for Environment Pollution Control and Remediation Materials, College of Life Science and Technology, Jinan University, Guangzhou 510632, China – sequence: 6 givenname: Lei surname: Xiang fullname: Xiang, Lei organization: Guangdong Provincial Research Center for Environment Pollution Control and Remediation Materials, College of Life Science and Technology, Jinan University, Guangzhou 510632, China – sequence: 7 givenname: Hui surname: Li fullname: Li, Hui organization: Guangdong Provincial Research Center for Environment Pollution Control and Remediation Materials, College of Life Science and Technology, Jinan University, Guangzhou 510632, China – sequence: 8 givenname: Ce-Hui surname: Mo fullname: Mo, Ce-Hui organization: Guangdong Provincial Research Center for Environment Pollution Control and Remediation Materials, College of Life Science and Technology, Jinan University, Guangzhou 510632, China – sequence: 9 givenname: Yan-Wen surname: Li fullname: Li, Yan-Wen organization: Guangdong Provincial Research Center for Environment Pollution Control and Remediation Materials, College of Life Science and Technology, Jinan University, Guangzhou 510632, China – sequence: 10 givenname: Quan-Ying surname: Cai fullname: Cai, Quan-Ying email: caiqy@jnu.edu.cn organization: Guangdong Provincial Research Center for Environment Pollution Control and Remediation Materials, College of Life Science and Technology, Jinan University, Guangzhou 510632, China – sequence: 11 givenname: Qing X. surname: Li fullname: Li, Qing X. organization: Department of Molecular Bioscience and Bioengineering, University of Hawaii at Manoa, Honolulu, Hawaii 96822, USA |
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| Keywords | Ecological assembly Nitrogen cycle Antibiotics Root-associated microbiome Community stability |
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| SubjectTerms | Anti-Bacterial Agents Antibiotics Bacteria - genetics bacterial communities Ciprofloxacin Community stability community structure corn denitrification Ecological assembly genes host plants keystone species Massilia nitrification Nitrogen Nitrogen cycle organic nitrogen Plant Roots - microbiology pollution quantitative polymerase chain reaction Rhizobium rhizoplane Rhizosphere Root-associated microbiome Soil Soil Microbiology Tetracycline Zea mays Zea mays - microbiology |
| Title | Root-associated bacteria strengthen their community stability against disturbance of antibiotics on structure and functions |
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