Detection of acute lymphoblastic leukemia using image segmentation and data mining algorithms
Blood is composed of white blood cells, red blood cells, and platelets. Segmentation of the blood smear cells and extraction of features of the cells is essential in the field of medicine. Acute lymphoblastic leukemia is a form of blood cancer caused due to the abnormal increase in the production of...
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          | Published in | Medical & biological engineering & computing Vol. 57; no. 8; pp. 1783 - 1811 | 
|---|---|
| Main Authors | , | 
| Format | Journal Article | 
| Language | English | 
| Published | 
        Berlin/Heidelberg
          Springer Berlin Heidelberg
    
        01.08.2019
     Springer Nature B.V  | 
| Subjects | |
| Online Access | Get full text | 
| ISSN | 0140-0118 1741-0444 1741-0444  | 
| DOI | 10.1007/s11517-019-01984-1 | 
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| Abstract | Blood is composed of white blood cells, red blood cells, and platelets. Segmentation of the blood smear cells and extraction of features of the cells is essential in the field of medicine. Acute lymphoblastic leukemia is a form of blood cancer caused due to the abnormal increase in the production of immature white blood cells in the bone marrow. It mostly affects the children below 5 years and adults above 50 years of age. Due to the late diagnosis and cost of the devices used for the determination, the mortality rate has increased drastically. Flow cytometry technique that performs automated counting fails to identify the abnormal cells. Manual recount performed using hemocytometer are prone to errors and are imprecise. The proposed work aims to survey different computer-aided system techniques used to segment the blood smear image. The primary objective here is to derive knowledge from the different methodologies used for extracting features from white blood cells and develop a system that would accurately segment the blood smear image by overcoming the drawbacks of the previous works. The objective mentioned above is achieved in two ways. Firstly, a novel algorithm is developed to segment the nucleus and cytoplasm of white blood cell. Secondly, a model is built to extract the features and train the model. The different supervised classifiers are compared, and the one with the highest accuracy is used for the classification. Six hundred images are used in the experimentation. InfoGainAttributeEval and the Ranker Search method are used to achieve the feature selection which in turn helps in improvising the classifier performance. The result shows the classification of the acute lymphoblastic leukemia into its three respective categories namely: ALL-L1, ALL-L2, ALL-L3. The model can differentiate between a normal peripheral blood smear and an abnormal blood smear. The extracted feature values of a cancerous cell and a normal cell are also shown. The performance of the model is evaluated using the test images stained with various stains. The proposed algorithm achieved an overall accuracy of 98.6%. The promising results show that it can be used as a diagnostic tool by the pathologists.
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| AbstractList | Blood is composed of white blood cells, red blood cells, and platelets. Segmentation of the blood smear cells and extraction of features of the cells is essential in the field of medicine. Acute lymphoblastic leukemia is a form of blood cancer caused due to the abnormal increase in the production of immature white blood cells in the bone marrow. It mostly affects the children below 5 years and adults above 50 years of age. Due to the late diagnosis and cost of the devices used for the determination, the mortality rate has increased drastically. Flow cytometry technique that performs automated counting fails to identify the abnormal cells. Manual recount performed using hemocytometer are prone to errors and are imprecise. The proposed work aims to survey different computer-aided system techniques used to segment the blood smear image. The primary objective here is to derive knowledge from the different methodologies used for extracting features from white blood cells and develop a system that would accurately segment the blood smear image by overcoming the drawbacks of the previous works. The objective mentioned above is achieved in two ways. Firstly, a novel algorithm is developed to segment the nucleus and cytoplasm of white blood cell. Secondly, a model is built to extract the features and train the model. The different supervised classifiers are compared, and the one with the highest accuracy is used for the classification. Six hundred images are used in the experimentation. InfoGainAttributeEval and the Ranker Search method are used to achieve the feature selection which in turn helps in improvising the classifier performance. The result shows the classification of the acute lymphoblastic leukemia into its three respective categories namely: ALL-L1, ALL-L2, ALL-L3. The model can differentiate between a normal peripheral blood smear and an abnormal blood smear. The extracted feature values of a cancerous cell and a normal cell are also shown. The performance of the model is evaluated using the test images stained with various stains. The proposed algorithm achieved an overall accuracy of 98.6%. The promising results show that it can be used as a diagnostic tool by the pathologists. Graphical abstract.Blood is composed of white blood cells, red blood cells, and platelets. Segmentation of the blood smear cells and extraction of features of the cells is essential in the field of medicine. Acute lymphoblastic leukemia is a form of blood cancer caused due to the abnormal increase in the production of immature white blood cells in the bone marrow. It mostly affects the children below 5 years and adults above 50 years of age. Due to the late diagnosis and cost of the devices used for the determination, the mortality rate has increased drastically. Flow cytometry technique that performs automated counting fails to identify the abnormal cells. Manual recount performed using hemocytometer are prone to errors and are imprecise. The proposed work aims to survey different computer-aided system techniques used to segment the blood smear image. The primary objective here is to derive knowledge from the different methodologies used for extracting features from white blood cells and develop a system that would accurately segment the blood smear image by overcoming the drawbacks of the previous works. The objective mentioned above is achieved in two ways. Firstly, a novel algorithm is developed to segment the nucleus and cytoplasm of white blood cell. Secondly, a model is built to extract the features and train the model. The different supervised classifiers are compared, and the one with the highest accuracy is used for the classification. Six hundred images are used in the experimentation. InfoGainAttributeEval and the Ranker Search method are used to achieve the feature selection which in turn helps in improvising the classifier performance. The result shows the classification of the acute lymphoblastic leukemia into its three respective categories namely: ALL-L1, ALL-L2, ALL-L3. The model can differentiate between a normal peripheral blood smear and an abnormal blood smear. The extracted feature values of a cancerous cell and a normal cell are also shown. The performance of the model is evaluated using the test images stained with various stains. The proposed algorithm achieved an overall accuracy of 98.6%. The promising results show that it can be used as a diagnostic tool by the pathologists. Graphical abstract. Blood is composed of white blood cells, red blood cells, and platelets. Segmentation of the blood smear cells and extraction of features of the cells is essential in the field of medicine. Acute lymphoblastic leukemia is a form of blood cancer caused due to the abnormal increase in the production of immature white blood cells in the bone marrow. It mostly affects the children below 5 years and adults above 50 years of age. Due to the late diagnosis and cost of the devices used for the determination, the mortality rate has increased drastically. Flow cytometry technique that performs automated counting fails to identify the abnormal cells. Manual recount performed using hemocytometer are prone to errors and are imprecise. The proposed work aims to survey different computer-aided system techniques used to segment the blood smear image. The primary objective here is to derive knowledge from the different methodologies used for extracting features from white blood cells and develop a system that would accurately segment the blood smear image by overcoming the drawbacks of the previous works. The objective mentioned above is achieved in two ways. Firstly, a novel algorithm is developed to segment the nucleus and cytoplasm of white blood cell. Secondly, a model is built to extract the features and train the model. The different supervised classifiers are compared, and the one with the highest accuracy is used for the classification. Six hundred images are used in the experimentation. InfoGainAttributeEval and the Ranker Search method are used to achieve the feature selection which in turn helps in improvising the classifier performance. The result shows the classification of the acute lymphoblastic leukemia into its three respective categories namely: ALL-L1, ALL-L2, ALL-L3. The model can differentiate between a normal peripheral blood smear and an abnormal blood smear. The extracted feature values of a cancerous cell and a normal cell are also shown. The performance of the model is evaluated using the test images stained with various stains. The proposed algorithm achieved an overall accuracy of 98.6%. The promising results show that it can be used as a diagnostic tool by the pathologists. Graphical abstract Blood is composed of white blood cells, red blood cells, and platelets. Segmentation of the blood smear cells and extraction of features of the cells is essential in the field of medicine. Acute lymphoblastic leukemia is a form of blood cancer caused due to the abnormal increase in the production of immature white blood cells in the bone marrow. It mostly affects the children below 5 years and adults above 50 years of age. Due to the late diagnosis and cost of the devices used for the determination, the mortality rate has increased drastically. Flow cytometry technique that performs automated counting fails to identify the abnormal cells. Manual recount performed using hemocytometer are prone to errors and are imprecise. The proposed work aims to survey different computer-aided system techniques used to segment the blood smear image. The primary objective here is to derive knowledge from the different methodologies used for extracting features from white blood cells and develop a system that would accurately segment the blood smear image by overcoming the drawbacks of the previous works. The objective mentioned above is achieved in two ways. Firstly, a novel algorithm is developed to segment the nucleus and cytoplasm of white blood cell. Secondly, a model is built to extract the features and train the model. The different supervised classifiers are compared, and the one with the highest accuracy is used for the classification. Six hundred images are used in the experimentation. InfoGainAttributeEval and the Ranker Search method are used to achieve the feature selection which in turn helps in improvising the classifier performance. The result shows the classification of the acute lymphoblastic leukemia into its three respective categories namely: ALL-L1, ALL-L2, ALL-L3. The model can differentiate between a normal peripheral blood smear and an abnormal blood smear. The extracted feature values of a cancerous cell and a normal cell are also shown. The performance of the model is evaluated using the test images stained with various stains. The proposed algorithm achieved an overall accuracy of 98.6%. The promising results show that it can be used as a diagnostic tool by the pathologists. Blood is composed of white blood cells, red blood cells, and platelets. Segmentation of the blood smear cells and extraction of features of the cells is essential in the field of medicine. Acute lymphoblastic leukemia is a form of blood cancer caused due to the abnormal increase in the production of immature white blood cells in the bone marrow. It mostly affects the children below 5 years and adults above 50 years of age. Due to the late diagnosis and cost of the devices used for the determination, the mortality rate has increased drastically. Flow cytometry technique that performs automated counting fails to identify the abnormal cells. Manual recount performed using hemocytometer are prone to errors and are imprecise. The proposed work aims to survey different computer-aided system techniques used to segment the blood smear image. The primary objective here is to derive knowledge from the different methodologies used for extracting features from white blood cells and develop a system that would accurately segment the blood smear image by overcoming the drawbacks of the previous works. The objective mentioned above is achieved in two ways. Firstly, a novel algorithm is developed to segment the nucleus and cytoplasm of white blood cell. Secondly, a model is built to extract the features and train the model. The different supervised classifiers are compared, and the one with the highest accuracy is used for the classification. Six hundred images are used in the experimentation. InfoGainAttributeEval and the Ranker Search method are used to achieve the feature selection which in turn helps in improvising the classifier performance. The result shows the classification of the acute lymphoblastic leukemia into its three respective categories namely: ALL-L1, ALL-L2, ALL-L3. The model can differentiate between a normal peripheral blood smear and an abnormal blood smear. The extracted feature values of a cancerous cell and a normal cell are also shown. The performance of the model is evaluated using the test images stained with various stains. The proposed algorithm achieved an overall accuracy of 98.6%. The promising results show that it can be used as a diagnostic tool by the pathologists. Graphical abstract.  | 
    
| Author | Acharya, Vasundhara Kumar, Preetham  | 
    
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| BackLink | https://www.ncbi.nlm.nih.gov/pubmed/31201595$$D View this record in MEDLINE/PubMed | 
    
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| Copyright | International Federation for Medical and Biological Engineering 2019 Medical & Biological Engineering & Computing is a copyright of Springer, (2019). All Rights Reserved.  | 
    
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| References_xml | – reference: Wang M, Chu R (2009) A novel white blood cell detection method based on boundary support vectors. In proc. of the 2009 IEEE international conference on systems. Man and Cybernetics:2595–2598 – reference: Label the components (2015) https://in.mathworks.com/help/images/ref/bwlabel.html. Accessed: 16th November, 2017 – reference: Attribute-Relation File Format (ARFF) (2008) ARFF. In: Attribute-Relation File Format (ARFF). Available via. https://www.cs.waikato.ac.nz/ml/weka/arff.html. Accessed 16 Nov 2017 – reference: Area open function (2015) https://in.mathworks.com/help/images/ref/bwareaopen.html. Accessed 16th November, 2017 – reference: Wright Stain Method Technical Data Sheet (2005) Wright Stain . In: Technical Data Sheets. Available via. https://www.emsdiasum.com/microscopy/technical/datasheet/26060.aspx. 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Accessed16th November, 2017 – reference: Labati RD, Piuri V, Scotti F (2011) ALL -IDB: the acute lymphoblastic leukemia image database for image processing. In Proc. of the 2011 IEEE international conference on image processing 2045–2048. https://doi.org/10.1109/ICIP.2011.6115881 – reference: Wang M, Zhou X, Li F, Huckins J, King RW, Wong STC Novel cell segmentation and online learning algorithms for cell phase identification in automated time-lapse microscopy. In 2007 4th IEEE International Symposium on Biomedical Imaging: From Nano to Macro 65–68. https://doi.org/10.1109/isbi.2007.356789 – reference: Khobragade S, Mor DD, Patil CY (2015) Detection of leukemia in microscopic white blood cell images. In Proc. of the 2015 international conference on information processing (ICIP) (ICIP):435–440. https://doi.org/10.1109/INFOP.2015.7489422 – reference: Almuallim H, Dietterich TG (1991) Learning with many irrelevant features. In: Proc. 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Third Indian conference on computer vision. Graphics & Image Processing (ICVGIP):1–6.https://doi.org/10.1109/ICIEV.2016.7760026 – reference: Bhamare, Miss. Madhuri G. and D.S.Patil (2013) Automatic blood cell analysis by using digital image processing: a preliminary study .Int J Eng Res Technol 2(9):3137–3141. – reference: RetaCGonzalezJADiazRGuichardJSLeukocytes segmentation using Markov random fieldsAdv Exp Med Biol201169634535310.1007/978-1-4419-7046-6_351:CAS:528:DC%2BC2MXltV2ltQ%3D%3D21431575 – reference: Measurement properties (2017) https://in.mathworks.com/help/images/ref/regionprops.html. Accessed: 16th November, 2017 – reference: Karen Seiter (2016) ALL types. In:Acute Lymphoblastic Leukemia Staging. Available via https://emedicine.medscape.com/article/2006661-overview. 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Computational and Mathematical Methods in Medicine:1–14 – reference: C.I.E primaries (n.d.) http://hyperphysics.phy-astr.gsu.edu/hbase/vision/cieprim.html. Accessed 16th November, 2017 – reference: WangQWangJZhouMLiQWangYSpectral-spatial feature-based neural network method for acute lymphoblastic leukemia cell identification via microscopic hyperspectral imaging technologyBiomedical Optics Express20178630193028 – reference: MohammedEAMohamedMMFarBHNauglerCPeripheral blood smear image analysis: a comprehensive reviewJournal of Pathology Informatics201451910.4103/2153-3539.129442248438214023032 – reference: Kira K, Rendell LA. (1992) The feature selection problem: traditional methods and a newalgorithm. In: Proc. AAAI-92, San Jose, CA 122–126 – reference: Mishra, S. J., & Deshmukh,A.P. (2014) Detection of Leukemia in Human Blood Sample based on Microscopic Images. International Journal of Advanced Research in Electronics and Communication Engineering, 1(3) :10-14. – reference: Kumar BR, Joseph DK, Sreenivas TV( 2002) Teager energy based blood cell segmentation. In proceedings of the 14th international conference on digital signal processing, Santorini, Greece, 619–622 – reference: Alreza ZKK, Karimian A (2016) A. Design a new algorithm to count white blood cells for classification leukemic blood image using machine vision system. In Proceedings of the 6th International Conference on Computer and Knowledge Engineering (ICCKE), Mashhad, Iran, 251–256 – reference: Theera-Umpon N (2005) Patch-based white blood cell nucleus segmentation using fuzzy clustering. ECTI Transactions on Electrical Eng., Electronics, and Communications 3(1):15–19 – reference: GuoNZengLWuQA method based on multispectral imaging technique for white blood cell segmentationComput Biol Med200737707610.1016/j.compbiomed.2005.10.00316325166 – reference: Bhagvathi SL, Thomas NS (2016) An automatic system for detecting and counting RBC and WBC using fuzzy logic. ARPN-JEAS 11(11):6891–6894 – reference: JiangKJiangQXXiongYA novel white blood cell segmentation scheme using scale-space filtering and watershed clusteringMach Learning Cybernetics2003528202825 – reference: Nivaldo Medeiros(n.d.) Blood Smear Database. In: Atlas.Available via http://www.hematologyatlas.com/principalpage.htm. Accessed 16th November, 2017.http://www.hematologyatlas.com/principalpage.htm. Accessed 16 Nov 2017 – reference: Nasir A, Mustafa N, Nasir NFM (2009) Application of thresholding technique in determining ratio of blood cells for leukemia detection. In Proceedings of the international conference on man-machine systems (ICoMMS 2009), 1–6 – reference: MulikVBhilarePMAlhatSAnalysis of acute lymphoblastic leukemia cells using digital image processingInternational Journal for Scientific Research and Development2016427072 – reference: Impose minima (2003) https://in.mathworks.com/help/images/ref/imimposemin.html. Accessed: 16th November, 2017 – reference: Esti Suryani and Wiharto Wiharto and Nizomjon Polvonov (2015) Identification and Counting White Blood Cells and Red Blood Cells using Image Processing Case Study of Leukemia. International Journal of Computer Science & Network Solutions 2(6):35–49. – reference: JoshiMDKarodeAHSuralkarSRWhite blood cells segmentation and classification to detect acute leukemia. International journal of emerging trends Technology in ComputerScience201323147151 – reference: Gonzalez, R. C., R. E. Woods, and S. L. Eddins (2004) Digital Image Processing Using MATLAB. New Jersey, Pearson Prentice Hall – reference: MyHematalogy(2017) Leishman Stain . In : MyHematology. Available via https://myhematology.com/red-blood-cells/leishman-stain/ . Accessed: 16th Nov, 2017 – reference: Histogram equalization (2015). Histeq function. In: Histogram Equalization. Available via https://in.mathworks.com/help/images/histogram-equalization.html . Accessed: 16th Nov, 2017 https://in.mathworks.com/help/images/histogram-equalization.html. Accessed: 16 Nov 2017 – reference: Watershed Transform (2013) https://blogs.mathworks.com/steve/2013/11/19/watershed-transform-question-from-tech-support/. Accessed: 16th November,2017 – reference: Erosion operation (2017) https://in.mathworks.com/help/images/ref/imerode.html. 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| Snippet | Blood is composed of white blood cells, red blood cells, and platelets. Segmentation of the blood smear cells and extraction of features of the cells is... | 
    
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| SubjectTerms | Accuracy Acute lymphoblastic leukemia Algorithms Biomedical and Life Sciences Biomedical Engineering and Bioengineering Biomedicine Blood Blood cancer Bone marrow Classifiers Computer Applications Cytoplasm Cytoplasm - pathology Data Mining Databases, Factual Diagnostic software Diagnostic systems Entropy Erythrocytes Experimentation Feature extraction Flow cytometry Fractals Hematology - methods Human Physiology Humans Image classification Image detection Image Interpretation, Computer-Assisted - methods Image processing Image Processing, Computer-Assisted - methods Image segmentation Imaging Leukemia Leukocytes Leukocytes - pathology Lymphatic leukemia Medical imaging Nuclei (cytology) Original Article Peripheral blood Platelets Precursor Cell Lymphoblastic Leukemia-Lymphoma - pathology Radiology Smear  | 
    
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| Title | Detection of acute lymphoblastic leukemia using image segmentation and data mining algorithms | 
    
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