A locally optimal hierarchical divisive heuristic for bipartite modularity maximization
Given a set of entities, cluster analysis aims at finding subsets, also called clusters or communities or modules, entities of which are homogeneous and well separated. In the last ten years clustering on networks, or graphs, has been a subject of intense study. Edges between pairs of vertices withi...
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| Published in | Optimization letters Vol. 8; no. 3; pp. 903 - 917 |
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| Main Authors | , |
| Format | Journal Article |
| Language | English |
| Published |
Berlin/Heidelberg
Springer Berlin Heidelberg
01.03.2014
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| Subjects | |
| Online Access | Get full text |
| ISSN | 1862-4472 1862-4480 |
| DOI | 10.1007/s11590-013-0621-x |
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| Abstract | Given a set of entities, cluster analysis aims at finding subsets, also called clusters or communities or modules, entities of which are homogeneous and well separated. In the last ten years clustering on networks, or graphs, has been a subject of intense study. Edges between pairs of vertices within the same cluster should be relatively dense, while edges between pairs of vertices in different clusters should be relatively sparse. This led Newman to define the modularity of a cluster as the difference between the number of internal edges and the expected number of such edges in a random graph with the same degree distribution. The modularity of a partition of the vertices is the sum of the modularities of its clusters. Modularity has been extended recently to the case of bipartite graphs. In this paper we propose a hierarchical divisive heuristic for approximate modularity maximization in bipartite graphs. The subproblem of bipartitioning a cluster is solved exactly; hence the heuristic is locally optimal. Several formulations of this subproblem are presented and compared. Some are much better than others, and this illustrates the importance of reformulations. Computational experiences on a series of ten test problems from the literature are reported. |
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| AbstractList | Given a set of entities, cluster analysis aims at finding subsets, also called clusters or communities or modules, entities of which are homogeneous and well separated. In the last ten years clustering on networks, or graphs, has been a subject of intense study. Edges between pairs of vertices within the same cluster should be relatively dense, while edges between pairs of vertices in different clusters should be relatively sparse. This led Newman to define the modularity of a cluster as the difference between the number of internal edges and the expected number of such edges in a random graph with the same degree distribution. The modularity of a partition of the vertices is the sum of the modularities of its clusters. Modularity has been extended recently to the case of bipartite graphs. In this paper we propose a hierarchical divisive heuristic for approximate modularity maximization in bipartite graphs. The subproblem of bipartitioning a cluster is solved exactly; hence the heuristic is locally optimal. Several formulations of this subproblem are presented and compared. Some are much better than others, and this illustrates the importance of reformulations. Computational experiences on a series of ten test problems from the literature are reported. |
| Author | Costa, Alberto Hansen, Pierre |
| Author_xml | – sequence: 1 givenname: Alberto surname: Costa fullname: Costa, Alberto email: costa@lix.polytechnique.fr organization: LIX, École Polytechnique – sequence: 2 givenname: Pierre surname: Hansen fullname: Hansen, Pierre organization: LIX, École Polytechnique, GERAD, HEC Montréal |
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| Cites_doi | 10.1140/epjb/e2007-00331-0 10.1073/pnas.0605965104 10.1103/PhysRevE.76.036106 10.1103/PhysRevE.77.046112 10.1103/PhysRevE.76.066102 10.1103/PhysRevE.70.066111 10.1103/PhysRevE.80.026129 10.1023/B:OPTE.0000038889.84284.c7 10.1007/s10898-009-9520-1 10.1103/PhysRevE.82.046112 10.1103/PhysRevE.84.058101 10.1109/TKDE.2007.190689 10.1088/1367-2630/10/5/053039 10.1103/PhysRevE.81.046102 10.1080/10556780903087124 10.1142/S0219477507003854 10.1103/PhysRevE.69.026113 10.1016/j.physrep.2009.11.002 10.1103/PhysRevE.83.066120 10.1103/PhysRevE.78.026112 10.1073/pnas.122653799 10.1103/PhysRevE.69.066133 10.1103/PhysRevE.83.056105 10.1051/ro/2009005 10.1103/PhysRevE.74.016110 10.20965/jaciii.2010.p0408 10.1103/PhysRevE.81.046106 10.1109/WI-IAT.2009.15 10.1073/pnas.0703740104 |
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| Keywords | Clustering Modularity maximization Bipartite graphs |
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| Title | A locally optimal hierarchical divisive heuristic for bipartite modularity maximization |
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