Fully Automated Segmentation of Fluid/Cyst Regions in Optical Coherence Tomography Images With Diabetic Macular Edema Using Neutrosophic Sets and Graph Algorithms

• Published in: IEEE transactions on biomedical engineering Vol. 65; no. 5; pp. 989 - 1001
• Main Authors: Rashno, Abdolreza, Koozekanani, Dara D., Drayna, Paul M., Nazari, Behzad, Sadri, Saeed, Rabbani, Hossein, Parhi, Keshab K.
• Format: Journal Article
• Language: English
• Published: United States IEEE 01.05.2018; The Institute of Electrical and Electronics Engineers, Inc. (IEEE)
• Subjects: Algorithms; Automation; Cost function; Cysts; Cysts - diagnostic imaging; Datasets; Diabetes; Diabetes mellitus; Diabetic macular edema; Diabetic Retinopathy - diagnostic imaging; Edema; Epithelium; fluid/cyst segmentation; graph theory; Humans; Image Interpretation, Computer-Assisted - methods; Image processing; Image segmentation; Macular Edema - diagnostic imaging; neutrosophic set; Optical Coherence Tomography; Retina; Retina - diagnostic imaging; Retinal pigment epithelium; Sensitivity; Sensitivity and Specificity; Shortest-path problems; Signal processing algorithms; Three-dimensional displays; Tomography; Tomography, Optical Coherence - methods; Two dimensional displays
• ISSN: 0018-9294; 1558-2531; 1558-2531
• DOI: 10.1109/TBME.2017.2734058

This paper presents a fully automated algorithm to segment fluid-associated (fluid-filled) and cyst regions in optical coherence tomography (OCT) retina images of subjects with diabetic macular edema. The OCT image is segmented using a novel neutrosophic transformation and a graph-based shortest path method. In neutrosophic domain, an image g is transformed into three sets: T (true), I (indeterminate) that represents noise, and F (false). This paper makes four key contributions. First, a new method is introduced to compute the indeterminacy set I, and a new λ-correction operation is introduced to compute the set T in neutrosophic domain. Second, a graph shortestpath method is applied in neutrosophic domain to segment the inner limiting membrane and the retinal pigment epithelium as regions of interest (ROI) and outer plexiform layer and inner segment myeloid as middle layers using a novel definition of the edge weights. Third, a new cost function for cluster-based fluid/cyst segmentation in ROI is presented which also includes a novel approach in estimating the number of clusters in an automated manner. Fourth, the final fluid regions are achieved by ignoring very small regions and the regions between middle layers. The proposed method is evaluated using two publicly available datasets: Duke, Optima, and a third local dataset from the UMN clinic which is available online. The proposed algorithm outperforms the previously proposed Duke algorithm by 8% with respect to the dice coefficient and by 5% with respect to precision on the Duke dataset, while achieving about the same sensitivity. Also, the proposed algorithm outperforms a prior method for Optima dataset by 6%, 22%, and 23% with respect to the dice coefficient, sensitivity, and precision, respectively. Finally, the proposed algorithm also achieves sensitivity of 67.3%, 88.8%, and 76.7%, for the Duke, Optima, and the university of minnesota (UMN) datasets, respectively.