Realizing smart scanning transmission electron microscopy using high performance computing

Scanning Transmission Electron Microscopy (STEM) coupled with Electron Energy Loss Spectroscopy (EELS) presents a powerful platform for detailed material characterization via rich imaging and spectroscopic data. Modern electron microscopes can access multiple length scales and sampling rates far bey...

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Published inReview of scientific instruments Vol. 95; no. 10
Main Authors Pratiush, Utkarsh, Houston, Austin, Kalinin, Sergei V., Duscher, Gerd
Format Journal Article
LanguageEnglish
Published United States American Institute of Physics 01.10.2024
Subjects
Algorithms
Computation
Electron energy loss spectroscopy
High performance computing
Image filters
Machine learning
Python
Scanning electron microscopy
Scanning transmission electron microscopy
Transmission electron microscopy
Online AccessGet full text
ISSN0034-6748
1089-7623
1089-7623
DOI10.1063/5.0225401

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Abstract Scanning Transmission Electron Microscopy (STEM) coupled with Electron Energy Loss Spectroscopy (EELS) presents a powerful platform for detailed material characterization via rich imaging and spectroscopic data. Modern electron microscopes can access multiple length scales and sampling rates far beyond human perception and reaction time. Recent advancements in machine learning (ML) offer a promising avenue to enhance these capabilities by integrating ML algorithms into the STEM-EELS framework, fostering an environment of active learning. This work enables the seamless integration of STEM with High-Performance Computing (HPC) systems. This integration is facilitated by our developed server software, written in Python, which acts as a wrapper over DigitalMicrograph (version 3.5) hardware modules to enable remote computer interactions. We present several implemented workflows that exemplify this integration. These workflows include sophisticated techniques such as object finding and deep kernel learning. Through these developments, we demonstrate how the fusion of STEM-EELS with ML and HPC enhances the efficiency and scope of material characterization for all of STEM available globally having Gatan, Inc. image filter installed on them. The codes are available on GitHub.
AbstractList Scanning Transmission Electron Microscopy (STEM) coupled with Electron Energy Loss Spectroscopy (EELS) presents a powerful platform for detailed material characterization via rich imaging and spectroscopic data. Modern electron microscopes can access multiple length scales and sampling rates far beyond human perception and reaction time. Recent advancements in machine learning (ML) offer a promising avenue to enhance these capabilities by integrating ML algorithms into the STEM-EELS framework, fostering an environment of active learning. This work enables the seamless integration of STEM with High-Performance Computing (HPC) systems. This integration is facilitated by our developed server software, written in Python, which acts as a wrapper over DigitalMicrograph (version 3.5) hardware modules to enable remote computer interactions. We present several implemented workflows that exemplify this integration. These workflows include sophisticated techniques such as object finding and deep kernel learning. Through these developments, we demonstrate how the fusion of STEM-EELS with ML and HPC enhances the efficiency and scope of material characterization for all of STEM available globally having Gatan, Inc. image filter installed on them. The codes are available on GitHub.
Scanning Transmission Electron Microscopy (STEM) coupled with Electron Energy Loss Spectroscopy (EELS) presents a powerful platform for detailed material characterization via rich imaging and spectroscopic data. Modern electron microscopes can access multiple length scales and sampling rates far beyond human perception and reaction time. Recent advancements in machine learning (ML) offer a promising avenue to enhance these capabilities by integrating ML algorithms into the STEM-EELS framework, fostering an environment of active learning. This work enables the seamless integration of STEM with High-Performance Computing (HPC) systems. This integration is facilitated by our developed server software, written in Python, which acts as a wrapper over DigitalMicrograph (version 3.5) hardware modules to enable remote computer interactions. We present several implemented workflows that exemplify this integration. These workflows include sophisticated techniques such as object finding and deep kernel learning. Through these developments, we demonstrate how the fusion of STEM-EELS with ML and HPC enhances the efficiency and scope of material characterization for all of STEM available globally having Gatan, Inc. image filter installed on them. The codes are available on GitHub.Scanning Transmission Electron Microscopy (STEM) coupled with Electron Energy Loss Spectroscopy (EELS) presents a powerful platform for detailed material characterization via rich imaging and spectroscopic data. Modern electron microscopes can access multiple length scales and sampling rates far beyond human perception and reaction time. Recent advancements in machine learning (ML) offer a promising avenue to enhance these capabilities by integrating ML algorithms into the STEM-EELS framework, fostering an environment of active learning. This work enables the seamless integration of STEM with High-Performance Computing (HPC) systems. This integration is facilitated by our developed server software, written in Python, which acts as a wrapper over DigitalMicrograph (version 3.5) hardware modules to enable remote computer interactions. We present several implemented workflows that exemplify this integration. These workflows include sophisticated techniques such as object finding and deep kernel learning. Through these developments, we demonstrate how the fusion of STEM-EELS with ML and HPC enhances the efficiency and scope of material characterization for all of STEM available globally having Gatan, Inc. image filter installed on them. The codes are available on GitHub.
Author Houston, Austin
Pratiush, Utkarsh
Duscher, Gerd
Kalinin, Sergei V.
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Snippet Scanning Transmission Electron Microscopy (STEM) coupled with Electron Energy Loss Spectroscopy (EELS) presents a powerful platform for detailed material...
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SubjectTerms Algorithms
Computation
Electron energy loss spectroscopy
High performance computing
Image filters
Machine learning
Python
Scanning electron microscopy
Scanning transmission electron microscopy
Transmission electron microscopy
Title Realizing smart scanning transmission electron microscopy using high performance computing
URI http://dx.doi.org/10.1063/5.0225401
https://www.ncbi.nlm.nih.gov/pubmed/39352239
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