Multiple solutions of steady-state Poisson-Nernst-Planck equations with steric effects
Experiments measuring currents through single protein channels show unstable currents. Channels switch between 'open' or 'closed' states in a spontaneous stochastic process called gating. Currents are either (nearly) zero or at a definite level, characteristic of each type of pro...
Saved in:
Published in | Nonlinearity Vol. 28; no. 7; pp. 2053 - 2080 |
---|---|
Main Authors | , |
Format | Journal Article |
Language | English |
Published |
IOP Publishing
01.07.2015
|
Subjects | |
Online Access | Get full text |
ISSN | 0951-7715 1361-6544 |
DOI | 10.1088/0951-7715/28/7/2053 |
Cover
Abstract | Experiments measuring currents through single protein channels show unstable currents. Channels switch between 'open' or 'closed' states in a spontaneous stochastic process called gating. Currents are either (nearly) zero or at a definite level, characteristic of each type of protein, independent of time, once the channel is open. The steady state Poisson-Nernst-Planck equations with steric effects (PNP-steric equations) describe steady current through the open channel quite well, in a wide variety of conditions. Here we study the existence of multiple solutions of steady state PNP-steric equations to see if they themselves, without modification or augmentation, can describe two levels of current. We prove that there are two steady state solutions of PNP-steric equations for (a) three types of ion species (two types of cations and one type of anion) with a positive constant permanent charge, and (b) four types of ion species (two types of cations and their counter-ions) with a constant permanent charge but no sign condition. The excess currents (due to steric effects) associated with these two steady state solutions are derived and expressed as two distinct formulas. Our results indicate that PNP-steric equations may become a useful model to study spontaneous gating of ion channels. Spontaneous gating is thought to involve small structural changes in the channel protein that perhaps produce large changes in the profiles of free energy that determine ion flow. Gating is known to be modulated by external structures. Both can be included in future extensions of our present analysis. |
---|---|
AbstractList | Experiments measuring currents through single protein channels show unstable currents. Channels switch between 'open' or 'closed' states in a spontaneous stochastic process called gating. Currents are either (nearly) zero or at a definite level, characteristic of each type of protein, independent of time, once the channel is open. The steady state Poisson-Nernst-Planck equations with steric effects (PNP-steric equations) describe steady current through the open channel quite well, in a wide variety of conditions. Here we study the existence of multiple solutions of steady state PNP-steric equations to see if they themselves, without modification or augmentation, can describe two levels of current. We prove that there are two steady state solutions of PNP-steric equations for (a) three types of ion species (two types of cations and one type of anion) with a positive constant permanent charge, and (b) four types of ion species (two types of cations and their counter-ions) with a constant permanent charge but no sign condition. The excess currents (due to steric effects) associated with these two steady state solutions are derived and expressed as two distinct formulas. Our results indicate that PNP-steric equations may become a useful model to study spontaneous gating of ion channels. Spontaneous gating is thought to involve small structural changes in the channel protein that perhaps produce large changes in the profiles of free energy that determine ion flow. Gating is known to be modulated by external structures. Both can be included in future extensions of our present analysis. |
Author | Lin, Tai-Chia Eisenberg, Bob |
Author_xml | – sequence: 1 givenname: Tai-Chia surname: Lin fullname: Lin, Tai-Chia email: tclin@math.ntu.edu.tw organization: National Taiwan University Institute of Applied Mathematical Sciences, Center for Advanced Study in Theoretical Sciences (CASTS), No.1, section4, Roosevelt Road, Taipei 106, Taiwan – sequence: 2 givenname: Bob surname: Eisenberg fullname: Eisenberg, Bob email: beisenbe@rush.edu organization: Department of Molecular Biophysics & Physiology Rush Medical Center , 1653 West Congress, Parkway, Chicago, IL 60612, USA |
BookMark | eNqFkD1PwzAQQC1UJNrCL2DJyBJiO7HjjKjiSyrQAVgt27kIlzRubUeo_56EIgYGmG5573T3ZmjSuQ4QOif4kmAhMlwxkpYlYRkVWZlRzPIjNCU5JylnRTFB0x_iBM1CWGNMiKD5FL0-9G202xaS4No-WteFxDVJiKDqfRqiipCsnA3Bdekj-C7EdNWqzrwnsOvVgf-w8W00vDUJNA2YGE7RcaPaAGffc45ebq6fF3fp8un2fnG1TE1OaUxrBpTyiqlSm0pXpOYKhOIFqwnTTQGNyQvQxmCNSQ2lUAoKXBrNtdC8ITqfo4vD3q13ux5ClBsbDLTDieD6IEkpOMW54GxAqwNqvAvBQyONjV8fRK9sKwmWY0s5lpJjKUmFLOXYcnDzX-7W243y-3-s7GBZt5Vr1_tuSPGn8QnSA4mm |
CODEN | NONLE5 |
CitedBy_id | crossref_primary_10_1016_j_jcp_2019_108864 crossref_primary_10_1016_j_jelechem_2021_115886 crossref_primary_10_1016_j_physd_2017_12_008 crossref_primary_10_1021_acs_jpcb_8b00854 crossref_primary_10_1137_16M1055104 crossref_primary_10_1016_j_physd_2020_132536 crossref_primary_10_1016_j_cam_2024_115759 crossref_primary_10_1016_j_jcp_2020_109908 crossref_primary_10_1137_16M1071523 crossref_primary_10_1016_j_nonrwa_2019_04_001 crossref_primary_10_1016_j_jmaa_2018_01_024 crossref_primary_10_1007_s10884_020_09861_4 crossref_primary_10_1016_j_molliq_2018_10_033 crossref_primary_10_1002_mma_7453 crossref_primary_10_1016_j_bioelechem_2016_03_005 crossref_primary_10_1007_s10473_022_0315_5 crossref_primary_10_1103_PhysRevE_102_053301 crossref_primary_10_4236_jamp_2020_89145 crossref_primary_10_1007_s00033_021_01627_2 crossref_primary_10_1007_s11538_017_0349_3 crossref_primary_10_1021_acs_jpcb_2c00215 |
Cites_doi | 10.1088/0951-7715/22/4/007 10.1137/100783674 10.1007/978-3-7091-6961-2 10.1021/jp9108865 10.4310/CMS.2014.v12.n1.a7 10.1016/j.jde.2008.09.010 10.1021/jp108997f 10.1016/j.cis.2009.10.001 10.1137/S0036139995312149 10.1021/jp012054g 10.1103/PhysRevLett.106.046102 10.1142/9789814261418_0005 10.1109/TNB.2004.842495 10.1103/PhysRevE.89.022722 10.1063/1.3489418 10.1113/jphysiol.1952.sp004764 10.1007/s11242-010-9578-8 10.1016/j.bpj.2011.03.059 10.1073/pnas.87.19.7579 10.1137/110845690 10.4310/CMS.2011.v9.n2.a5 10.1007/978-3-7091-8752-4 10.1016/S0166-2236(02)02280-4 10.1137/060657480 10.1103/PhysRevLett.104.097802 10.1088/1478-3975/10/2/026007 10.1103/PhysRevE.81.031912 10.1016/j.jelechem.2004.06.001 10.1021/jp305273n 10.1103/PhysRevE.70.021506 10.1016/j.cplett.2011.05.037 10.1113/jphysiol.1957.sp005808 10.1088/0266-5611/27/8/083001 |
ContentType | Journal Article |
Copyright | 2015 IOP Publishing Ltd & London Mathematical Society |
Copyright_xml | – notice: 2015 IOP Publishing Ltd & London Mathematical Society |
DBID | AAYXX CITATION 7SC 7TB 7U5 8FD FR3 H8D JQ2 KR7 L7M L~C L~D |
DOI | 10.1088/0951-7715/28/7/2053 |
DatabaseName | CrossRef Computer and Information Systems Abstracts Mechanical & Transportation Engineering Abstracts Solid State and Superconductivity Abstracts Technology Research Database Engineering Research Database Aerospace Database ProQuest Computer Science Collection Civil Engineering Abstracts Advanced Technologies Database with Aerospace Computer and Information Systems Abstracts Academic Computer and Information Systems Abstracts Professional |
DatabaseTitle | CrossRef Aerospace Database Civil Engineering Abstracts Technology Research Database Computer and Information Systems Abstracts – Academic Mechanical & Transportation Engineering Abstracts ProQuest Computer Science Collection Computer and Information Systems Abstracts Solid State and Superconductivity Abstracts Engineering Research Database Advanced Technologies Database with Aerospace Computer and Information Systems Abstracts Professional |
DatabaseTitleList | Aerospace Database |
DeliveryMethod | fulltext_linktorsrc |
Discipline | Engineering Mathematics Physics |
DocumentTitleAlternate | Multiple solutions of steady-state Poisson-Nernst-Planck equations with steric effects |
EISSN | 1361-6544 |
EndPage | 2080 |
ExternalDocumentID | 10_1088_0951_7715_28_7_2053 non513507 |
GroupedDBID | -~X .DC 123 1JI 4.4 5B3 5PX 5VS 5ZH 7.M 7.Q AAGCD AAGID AAJIO AAJKP AALHV AATNI ABCXL ABHWH ABJNI ABQJV ABVAM ACAFW ACGFS ACHIP AEFHF AENEX AFYNE AKPSB ALMA_UNASSIGNED_HOLDINGS AOAED ASPBG ATQHT AVWKF AZFZN CBCFC CEBXE CJUJL CRLBU CS3 DU5 EBS EDWGO EJD EMSAF EPQRW EQZZN F5P HAK IHE IJHAN IOP IZVLO KOT LAP M45 N5L N9A NT- NT. P2P PJBAE R4D RIN RNS RO9 ROL RPA SY9 TN5 W28 XPP YQT ZMT AAYXX ADEQX AEINN CITATION 7SC 7TB 7U5 8FD FR3 H8D JQ2 KR7 L7M L~C L~D |
ID | FETCH-LOGICAL-c322t-d5e22695a7bc9b91d6ae8a645d15bf4efc34ebcc0b01de78aae407cb6b8b6f1b3 |
IEDL.DBID | IOP |
ISSN | 0951-7715 |
IngestDate | Tue Aug 05 10:59:32 EDT 2025 Wed Oct 01 03:24:44 EDT 2025 Thu Apr 24 22:56:40 EDT 2025 Wed Aug 21 03:32:04 EDT 2024 |
IsPeerReviewed | true |
IsScholarly | true |
Issue | 7 |
Language | English |
LinkModel | DirectLink |
MergedId | FETCHMERGED-LOGICAL-c322t-d5e22695a7bc9b91d6ae8a645d15bf4efc34ebcc0b01de78aae407cb6b8b6f1b3 |
Notes | NON-100314.R1 London Mathematical Society ObjectType-Article-1 SourceType-Scholarly Journals-1 ObjectType-Feature-2 content type line 23 |
PQID | 1786203865 |
PQPubID | 23500 |
PageCount | 28 |
ParticipantIDs | crossref_primary_10_1088_0951_7715_28_7_2053 iop_journals_10_1088_0951_7715_28_7_2053 proquest_miscellaneous_1786203865 crossref_citationtrail_10_1088_0951_7715_28_7_2053 |
ProviderPackageCode | CITATION AAYXX |
PublicationCentury | 2000 |
PublicationDate | 2015-07-01 |
PublicationDateYYYYMMDD | 2015-07-01 |
PublicationDate_xml | – month: 07 year: 2015 text: 2015-07-01 day: 01 |
PublicationDecade | 2010 |
PublicationTitle | Nonlinearity |
PublicationTitleAbbrev | Non |
PublicationTitleAlternate | Nonlinearity |
PublicationYear | 2015 |
Publisher | IOP Publishing |
Publisher_xml | – name: IOP Publishing |
References | 22 23 Eisenberg R (13) 1993; 64 24 25 26 Brezzi F (7) 2002 Eisenberg B (16) 2012 Lee C C (28) 2013 Lee C C (29) Eisenberg B ed Rice S A (18) 2011 Li B (30) 2009; 22 31 10 32 11 33 12 34 35 14 36 15 37 38 17 39 19 1 2 Burger M (8) 2011; 27 3 4 5 6 9 Kaufman I (27) 2013; 10 20 21 |
References_xml | – volume: 22 start-page: 811 issn: 0951-7715 year: 2009 ident: 30 publication-title: Nonlinearity doi: 10.1088/0951-7715/22/4/007 – ident: 9 doi: 10.1137/100783674 – ident: 34 doi: 10.1007/978-3-7091-6961-2 – ident: 22 doi: 10.1021/jp9108865 – ident: 31 doi: 10.4310/CMS.2014.v12.n1.a7 – ident: 32 doi: 10.1016/j.jde.2008.09.010 – ident: 19 doi: 10.1021/jp108997f – ident: 4 doi: 10.1016/j.cis.2009.10.001 – ident: 3 doi: 10.1137/S0036139995312149 – ident: 1 doi: 10.1021/jp012054g – ident: 6 doi: 10.1103/PhysRevLett.106.046102 – ident: 14 doi: 10.1142/9789814261418_0005 – ident: 11 doi: 10.1109/TNB.2004.842495 – ident: 37 doi: 10.1103/PhysRevE.89.022722 – ident: 36 doi: 10.1063/1.3489418 – volume: 64 start-page: A22 year: 1993 ident: 13 publication-title: Biophys. J. – start-page: 77 year: 2011 ident: 18 publication-title: Crowded Charges in Ion Channels, Advances in Chemical Physics – year: 2002 ident: 7 – ident: 29 – ident: 12 doi: 10.1113/jphysiol.1952.sp004764 – ident: 25 doi: 10.1007/s11242-010-9578-8 – ident: 33 doi: 10.1016/j.bpj.2011.03.059 – ident: 2 doi: 10.1073/pnas.87.19.7579 – ident: 38 doi: 10.1137/110845690 – ident: 24 doi: 10.4310/CMS.2011.v9.n2.a5 – ident: 35 doi: 10.1007/978-3-7091-8752-4 – ident: 23 doi: 10.1016/S0166-2236(02)02280-4 – ident: 15 doi: 10.1137/060657480 – ident: 26 doi: 10.1103/PhysRevLett.104.097802 – volume: 10 issn: 1478-3975 year: 2013 ident: 27 publication-title: Phys. Biol. doi: 10.1088/1478-3975/10/2/026007 – year: 2012 ident: 16 publication-title: Fluctuation Noise Lett. – ident: 39 doi: 10.1103/PhysRevE.81.031912 – ident: 10 doi: 10.1016/j.jelechem.2004.06.001 – ident: 21 doi: 10.1021/jp305273n – ident: 5 doi: 10.1103/PhysRevE.70.021506 – ident: 17 doi: 10.1016/j.cplett.2011.05.037 – ident: 20 doi: 10.1113/jphysiol.1957.sp005808 – year: 2013 ident: 28 publication-title: in preparation – volume: 27 issn: 0266-5611 year: 2011 ident: 8 publication-title: Inverse Problems doi: 10.1088/0266-5611/27/8/083001 |
SSID | ssj0011823 |
Score | 2.2588997 |
Snippet | Experiments measuring currents through single protein channels show unstable currents. Channels switch between 'open' or 'closed' states in a spontaneous... |
SourceID | proquest crossref iop |
SourceType | Aggregation Database Enrichment Source Index Database Publisher |
StartPage | 2053 |
SubjectTerms | Channels excess currents Gating and risering Mathematical analysis Mathematical models multiple solutions PNP-steric equations Proteins Spontaneous Steady state Steric effects |
Title | Multiple solutions of steady-state Poisson-Nernst-Planck equations with steric effects |
URI | https://iopscience.iop.org/article/10.1088/0951-7715/28/7/2053 https://www.proquest.com/docview/1786203865 |
Volume | 28 |
hasFullText | 1 |
inHoldings | 1 |
isFullTextHit | |
isPrint | |
journalDatabaseRights | – providerCode: PRVIOP databaseName: IOP Science Platform customDbUrl: eissn: 1361-6544 dateEnd: 99991231 omitProxy: false ssIdentifier: ssj0011823 issn: 0951-7715 databaseCode: IOP dateStart: 19880101 isFulltext: true titleUrlDefault: https://iopscience.iop.org/ providerName: IOP Publishing |
link | http://utb.summon.serialssolutions.com/2.0.0/link/0/eLvHCXMwnV1LS8QwEA66IujBt_gmggcPZnf7SJseRZRFWPXgirfQJNOL0q5u96C_3kmbFl8s4q2FTNrOpMk3ycw3hJwYXKKEioEJA4aF3NdMeZAy0J4O0OHwTWRzh4c30WAUXj_yR7fhVuXCFGM39XfxsiYKrlXoAuJEr6oMH8ce7_miF6P3zoN5shAIdC1sAt_tXXuKgNi5LSVvBRrWod87-bIyzePTf0zP1ZpztUpk87Z1qMlTd1qqrn7_RuT4_89ZIysOjtLzuvU6mYN8gyx_IinEu2HL7DrZIItVyKiebJKHoYtFpO3wpUVGq1HzxqpEJXpXoF2LnN3AK8JQZisk6ScKLzW_-ITaXWArgZMxdZElW2R0dXl_MWCuSgNDY_olMxwQwiU8jZVOVOKhcUGkUciNx1UWQqaDEJTWdsfVQCzSFNCJ1CpSQkWZp4Jt0smLHHYI9YxA_NIPDSAs4joRPDRRCEFkIAs0T3aJ31hIakdhbitpPMvqKF0IaZUprTKlL2QsrTJ3yVkrNK4ZPGY3P0VLSfcnT2Y3PW7Gh8Sf0p60pDkUUxSK0VHs23Kqe3_vbp8sIRrjdSzwAemUr1M4RMRTqqNqWH8A0MX00A |
linkProvider | IOP Publishing |
linkToPdf | http://utb.summon.serialssolutions.com/2.0.0/link/0/eLvHCXMwpV1LT9wwEB4VqiI4UJ7iVTBSDxzqXfJw7BwRdAW0u90DIG5WbE8uoGRhdw_w6xkn2Yi2CFXqLZEyljMztr-xx98AfHW0RCkjkSuHjscitNwEmHG0gY0o4Ahd4u8O9wfJ-XV8eStuX9-FKUfN1N-hx5oouFZhkxCnulVleCkD0Q1VV1L0LqLuyOVz8FFEQvryDRe_hu1JAuHntpy8F5oxD73d0G-r0xz14K8pulp3ep_Bznpcp5vcdaYT07HPf5A5_t8vrcByA0vZSS2xCh-wWIOlV2SF9NZvGV7Ha_CpSh2143W46Tc5iax1Y1bmrPKeJ15dWGLDkuxbFnyAjwRHua-UZO8YPtQ842Pmd4O9BE3KrMkw2YDr3ver03PeVGvgZNRwwp1AgnKpyKSxqUkDMjKqLImFC4TJY8xtFKOx1u-8OpQqy5CCSWsSo0ySBybahPmiLHALWOAU4Zjj2CHBI2FTJWKXxBglDvPIinQbwpmVtG2ozH1FjXtdHakrpb1CtVeoDpWW2it0G761QqOayeP9z4_IWroZ0eP3Pz2c-YimwelPXLICyykJSQoYj31Z1Z1_b-4AFoZnPf3zYvBjFxYJoIk6PXgP5iePU_xCIGhi9isvfwGLp_o6 |
openUrl | ctx_ver=Z39.88-2004&ctx_enc=info%3Aofi%2Fenc%3AUTF-8&rfr_id=info%3Asid%2Fsummon.serialssolutions.com&rft_val_fmt=info%3Aofi%2Ffmt%3Akev%3Amtx%3Ajournal&rft.genre=article&rft.atitle=Multiple+solutions+of+steady-state+Poisson-Nernst-Planck+equations+with+steric+effects&rft.jtitle=Nonlinearity&rft.au=Lin%2C+Tai-Chia&rft.au=Eisenberg%2C+Bob&rft.date=2015-07-01&rft.pub=IOP+Publishing&rft.issn=0951-7715&rft.eissn=1361-6544&rft.volume=28&rft.issue=7&rft.spage=2053&rft.epage=2080&rft_id=info:doi/10.1088%2F0951-7715%2F28%2F7%2F2053&rft.externalDocID=non513507 |
thumbnail_l | http://covers-cdn.summon.serialssolutions.com/index.aspx?isbn=/lc.gif&issn=0951-7715&client=summon |
thumbnail_m | http://covers-cdn.summon.serialssolutions.com/index.aspx?isbn=/mc.gif&issn=0951-7715&client=summon |
thumbnail_s | http://covers-cdn.summon.serialssolutions.com/index.aspx?isbn=/sc.gif&issn=0951-7715&client=summon |