Dataset of Two-Dimensional Gel Electrophoresis Images of Acute Myeloid Leukemia Patients before and after Induction Therapy
Acute myeloid leukemia (AML) is a malignant disorder of the hematopoietic stem and progenitor cells, which results in the build-up of immature blasts in the bone marrow and eventually in the peripheral blood of affected patients. Accurately assessing a patient´s prognosis is very important for clini...
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| Published in | Data (Basel) Vol. 6; no. 2; p. 20 |
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| Main Authors | , , , , , , , |
| Format | Journal Article |
| Language | English |
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Basel
MDPI AG
01.02.2021
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| ISSN | 2306-5729 2306-5729 |
| DOI | 10.3390/data6020020 |
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| Abstract | Acute myeloid leukemia (AML) is a malignant disorder of the hematopoietic stem and progenitor cells, which results in the build-up of immature blasts in the bone marrow and eventually in the peripheral blood of affected patients. Accurately assessing a patient´s prognosis is very important for clinical management of the disease, which is why there are several prognostic factors such as age, performance status at diagnosis, platelet count, serum creatinine and albumin that are taken into account by the clinician when deciding the course of treatment. However, proteomic changes related to treatment response in this patient group have not been widely explored. Here, we make available a set of 22 two-dimensional gel electrophoresis (2DGE) images obtained from the peripheral blood samples of 11 patients with AML, taken at the time of diagnosis and after induction therapy (approximately 21–28 days after starting treatment). The same set of 2DGE images is also made available after a preprocessing stage (an additional 22 2DGE pre-processed images), which was performed using algorithms developed in Python, in order to improve the visualization of characteristic spots and facilitate proteomic analysis of this type of images. |
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| AbstractList | Acute myeloid leukemia (AML) is a malignant disorder of the hematopoietic stem and progenitor cells, which results in the build-up of immature blasts in the bone marrow and eventually in the peripheral blood of affected patients. Accurately assessing a patient´s prognosis is very important for clinical management of the disease, which is why there are several prognostic factors such as age, performance status at diagnosis, platelet count, serum creatinine and albumin that are taken into account by the clinician when deciding the course of treatment. However, proteomic changes related to treatment response in this patient group have not been widely explored. Here, we make available a set of 22 two-dimensional gel electrophoresis (2DGE) images obtained from the peripheral blood samples of 11 patients with AML, taken at the time of diagnosis and after induction therapy (approximately 21–28 days after starting treatment). The same set of 2DGE images is also made available after a preprocessing stage (an additional 22 2DGE pre-processed images), which was performed using algorithms developed in Python, in order to improve the visualization of characteristic spots and facilitate proteomic analysis of this type of images. |
| Author | Urrea, Juan E. Restrepo, Luisa F. Prada-Arismendy, Jeanette Delgado-Trejos, Edilson Goez, Manuel M. Torres-Madronero, Maria C. Röthlisberger, Sarah Castillo, Erwing |
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| Cites_doi | 10.1002/cncr.22233 10.1016/S0165-9936(03)00508-9 10.22517/23447214.20091 10.1186/s12859-020-03713-0 10.1002/ajh.25214 10.1002/pmic.200300758 10.1109/10.238460 10.1016/j.gpb.2017.10.001 10.1002/pmic.200701027 |
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| References_xml | – volume: 107 start-page: 2099 year: 2006 ident: ref_1 article-title: Acute myeloid leukemia: Epidemiology and etiology publication-title: Cancer doi: 10.1002/cncr.22233 – volume: 22 start-page: 273 year: 2003 ident: ref_3 article-title: Proteome analysis by two-dimensional gel electrophoresis and mass spectrometry: Strengths and limitations publication-title: Trac. Trends Anal. Chem. doi: 10.1016/S0165-9936(03)00508-9 – volume: 24 start-page: 76 year: 2019 ident: ref_6 article-title: Procesamiento de imágenes de electroforesis bidimensional: Una revisión publication-title: Sci. Tech. doi: 10.22517/23447214.20091 – ident: ref_9 doi: 10.1186/s12859-020-03713-0 – volume: 93 start-page: 1267 year: 2018 ident: ref_2 article-title: Acute myeloid leukemia: 2019 update on risk-stratification and management publication-title: Am. J. Hematol. doi: 10.1002/ajh.25214 – volume: 4 start-page: 2377 year: 2004 ident: ref_4 article-title: Preprocessing of two-dimensional gel electrophoresis images publication-title: Proteomics doi: 10.1002/pmic.200300758 – volume: 40 start-page: 760 year: 1993 ident: ref_5 article-title: Two-dimensional electrophoresis image interpretation publication-title: IEEE Trans. Biomed. Eng. doi: 10.1109/10.238460 – volume: 16 start-page: 63 year: 2018 ident: ref_8 article-title: Preprocessing of 2-Dimensional Gel Electrophoresis Images Applied to Proteomic Analysis: A Review publication-title: Genom. Proteom. Bioinform. doi: 10.1016/j.gpb.2017.10.001 – volume: 9 start-page: 3877 year: 2009 ident: ref_7 article-title: Improving 2-DE gel image denoising using contourlets publication-title: Proteomics doi: 10.1002/pmic.200701027 |
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| SubjectTerms | acute myeloid leukemia Albumins Algorithms Blood Bone marrow Cells (biology) Creatinine Diagnosis Electrophoresis Health services image preprocessing Leukemia Medical imaging Medical prognosis Noise Patients Proteins proteomics two-dimensional gel electrophoresis |
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| Title | Dataset of Two-Dimensional Gel Electrophoresis Images of Acute Myeloid Leukemia Patients before and after Induction Therapy |
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