High yield of monogenic short stature in children from Kurdistan, Iraq: A genetic testing algorithm for consanguineous families

• Published in: Genetics in medicine Vol. 27; no. 2; p. 101332
• Main Authors: Amaratunga, Shenali Anne, Tayeb, Tara Hussein, Dusatkova, Petra, Elblova, Lenka, Drabova, Jana, Plachy, Lukas, Pruhova, Stepanka, Lebl, Jan
• Format: Journal Article
• Language: English
• Published: United States Elsevier Inc 01.02.2025
• Subjects: Adolescent; Algorithms; Body Height - genetics; Child; Child, Preschool; Consanguinity; Dwarfism - diagnosis; Dwarfism - epidemiology; Dwarfism - genetics; Exome Sequencing; Female; Genetic Testing - methods; Genetic testing algorithm; Humans; Iraq - epidemiology; Male; Pediatric endocrinology; Pedigree; Short stature; Short stature genes; Iraq; Genetic testing algorithm; Short stature; Consanguinity; Short stature genes; Pediatric endocrinology
• ISSN: 1098-3600; 1530-0366; 1530-0366
• DOI: 10.1016/j.gim.2024.101332

Genetic testing in consanguineous families advances the general comprehension of pathophysiological pathways. However, short stature (SS) genetics remain unexplored in a defined consanguineous cohort. This study examines a unique pediatric cohort from Sulaimani, Iraq, aiming to inspire a genetic testing algorithm for similar populations. Among 280 SS referrals from 2018-2020, 64 children met inclusion criteria (from consanguineous families; height ≤ −2.25 SD), 51 provided informed consent (30 females; 31 syndromic SS) and underwent investigation, primarily via exome sequencing. Prioritized variants were evaluated by the American College of Medical Genetics and Genomics standards. A comparative analysis was conducted by juxtaposing our findings against published gene panels for SS. A genetic cause of SS was elucidated in 31 of 51 (61%) participants. Pathogenic variants were found in genes involved in the GH-IGF-1 axis (GHR and SOX3), thyroid axis (TSHR), growth plate (CTSK, COL1A2, COL10A1, DYM, FN1, LTBP3, MMP13, NPR2, and SHOX), signal transduction (PTPN11), DNA/RNA replication (DNAJC21, GZF1, and LIG4), cytoskeletal structure (CCDC8, FLNA, and PCNT), transmembrane transport (SLC34A3 and SLC7A7), enzyme coding (CYP27B1, GALNS, and GNPTG), and ciliogenesis (CFAP410). Two additional participants had Silver-Russell syndrome and 1 had del22q.11.21. Syndromic SS was predictive in identifying a monogenic condition. Using a gene panel would yield positive results in only 10% to 33% of cases. A tailored testing strategy is essential to increase diagnostic yield in children with SS from consanguineous populations.