Oqtans: a Galaxy-integrated workflow for quantitative transcriptome analysis from NGS Data
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| Published in | BMC bioinformatics Vol. 12; no. Suppl 11; p. A7 |
|---|---|
| Main Authors | , , , , , , , , , , |
| Format | Journal Article Conference Proceeding |
| Language | English |
| Published |
London
BioMed Central
21.11.2011
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| Subjects | |
| Online Access | Get full text |
| ISSN | 1471-2105 1471-2105 |
| DOI | 10.1186/1471-2105-12-S11-A7 |
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| ArticleNumber | A7 |
|---|---|
| Author | Kahles, André Zeller, Georg Schultheiss, Sebastian J Bohnert, Regina Sreedharan, Vipin T Jean, Géraldine Mudrakarta, Pramod Rätsch, Gunnar Drewe, Philipp Behr, Jonas Görnitz, Nico |
| AuthorAffiliation | 2 Department of Software Engineering and Theoretical Computer Science, Technical University Berlin, 10578 Berlin, Germany 3 Structural and Computational Biology Unit, European Molecular Biology Laboratory, 69117 Heidelberg, Germany 1 Machine Learning in Biology Group, Friedrich Miescher Laboratory of the Max Planck Society, 72076 Tübingen, Germany |
| AuthorAffiliation_xml | – name: 2 Department of Software Engineering and Theoretical Computer Science, Technical University Berlin, 10578 Berlin, Germany – name: 3 Structural and Computational Biology Unit, European Molecular Biology Laboratory, 69117 Heidelberg, Germany – name: 1 Machine Learning in Biology Group, Friedrich Miescher Laboratory of the Max Planck Society, 72076 Tübingen, Germany |
| Author_xml | – sequence: 1 givenname: Sebastian J surname: Schultheiss fullname: Schultheiss, Sebastian J email: sebastian@bioweb.me organization: Machine Learning in Biology Group, Friedrich Miescher Laboratory of the Max Planck Society – sequence: 2 givenname: Géraldine surname: Jean fullname: Jean, Géraldine organization: Machine Learning in Biology Group, Friedrich Miescher Laboratory of the Max Planck Society – sequence: 3 givenname: Jonas surname: Behr fullname: Behr, Jonas organization: Machine Learning in Biology Group, Friedrich Miescher Laboratory of the Max Planck Society – sequence: 4 givenname: Regina surname: Bohnert fullname: Bohnert, Regina organization: Machine Learning in Biology Group, Friedrich Miescher Laboratory of the Max Planck Society – sequence: 5 givenname: Philipp surname: Drewe fullname: Drewe, Philipp organization: Machine Learning in Biology Group, Friedrich Miescher Laboratory of the Max Planck Society – sequence: 6 givenname: Nico surname: Görnitz fullname: Görnitz, Nico organization: Machine Learning in Biology Group, Friedrich Miescher Laboratory of the Max Planck Society, Department of Software Engineering and Theoretical Computer Science, Technical University Berlin – sequence: 7 givenname: André surname: Kahles fullname: Kahles, André organization: Machine Learning in Biology Group, Friedrich Miescher Laboratory of the Max Planck Society – sequence: 8 givenname: Pramod surname: Mudrakarta fullname: Mudrakarta, Pramod organization: Machine Learning in Biology Group, Friedrich Miescher Laboratory of the Max Planck Society – sequence: 9 givenname: Vipin T surname: Sreedharan fullname: Sreedharan, Vipin T organization: Machine Learning in Biology Group, Friedrich Miescher Laboratory of the Max Planck Society – sequence: 10 givenname: Georg surname: Zeller fullname: Zeller, Georg organization: Machine Learning in Biology Group, Friedrich Miescher Laboratory of the Max Planck Society, Structural and Computational Biology Unit, European Molecular Biology Laboratory – sequence: 11 givenname: Gunnar surname: Rätsch fullname: Rätsch, Gunnar organization: Machine Learning in Biology Group, Friedrich Miescher Laboratory of the Max Planck Society |
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| Cites_doi | 10.1186/gb-2011-12-3-r22 10.1093/nar/gkq448 10.1186/gb-2010-11-8-r86 10.1093/bioinformatics/btp120 |
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| Copyright | Schultheiss et al; licensee BioMed Central Ltd. 2011 2011 Schultheiss et al; licensee BioMed Central Ltd. This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. Distributed under a Creative Commons Attribution 4.0 International License Copyright ©2011 Schultheiss et al; licensee BioMed Central Ltd. 2011 Schultheiss et al; licensee BioMed Central Ltd. |
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| Keywords | Differential Expression Analysis Cloud Computing Environment Cloud Computing Virtual Machine Read Mapping |
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| References | SJ Schultheiss (4894_CR2) 2011; 6 A Roberts (4894_CR6) 2011; 12 C Trapnell (4894_CR5) 2009; 25 J Goecks (4894_CR1) 2010; 11 G Jean (4894_CR3) 2010 R Bohnert (4894_CR4) 2010; 38 |
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| Title | Oqtans: a Galaxy-integrated workflow for quantitative transcriptome analysis from NGS Data |
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