Pile-up free fluorescence lifetime imaging with a SPAD-based single pixel camera

In the last years, single-pixel imaging (SPI) has been extensively utilized in fluorescence lifetime imaging (FLIM) experiments. In this context, to attain high temporal resolution, time-correlated single photon counting (TCSPC) is typically adopted, with the major drawback of the pile-up phenomenon...

Full description

Saved in:
Bibliographic Details
Published inOptics express Vol. 33; no. 11; p. 22296
Main Authors Farina, Serena, Ghezzi, Alberto, Labanca, Ivan, Acconcia, Giulia, D’Andrea, Cosimo, Farina, Andrea, Rech, Ivan
Format Journal Article
LanguageEnglish
Published United States 02.06.2025
Online AccessGet full text
ISSN1094-4087
1094-4087
DOI10.1364/OE.555297

Cover

Abstract In the last years, single-pixel imaging (SPI) has been extensively utilized in fluorescence lifetime imaging (FLIM) experiments. In this context, to attain high temporal resolution, time-correlated single photon counting (TCSPC) is typically adopted, with the major drawback of the pile-up phenomenon, that limits the photon count rate to 1–5% of the laser excitation rate. This clearly hinders the possibility of monitoring a wide variety of biological phenomena in real-time. In this paper, to the best of our knowledge, we apply for the first time to a single-pixel camera (SPC) a hardware-based method, that allows to completely avoid the onset of pile-up by matching the dead time of the employed single-photon avalanche diode (SPAD) detector to an integer multiple of the laser period. We therefore demonstrate that undistorted and high-fidelity lifetime maps can be acquired at count rates (40%) well above the classic pile-up limitation, even in the presence of computational imaging algorithms. These results are supported by a thorough analysis of both the raw data prior to the reconstruction process and the final reconstructed lifetime maps.
AbstractList In the last years, single-pixel imaging (SPI) has been extensively utilized in fluorescence lifetime imaging (FLIM) experiments. In this context, to attain high temporal resolution, time-correlated single photon counting (TCSPC) is typically adopted, with the major drawback of the pile-up phenomenon, that limits the photon count rate to 1–5% of the laser excitation rate. This clearly hinders the possibility of monitoring a wide variety of biological phenomena in real-time. In this paper, to the best of our knowledge, we apply for the first time to a single-pixel camera (SPC) a hardware-based method, that allows to completely avoid the onset of pile-up by matching the dead time of the employed single-photon avalanche diode (SPAD) detector to an integer multiple of the laser period. We therefore demonstrate that undistorted and high-fidelity lifetime maps can be acquired at count rates (40%) well above the classic pile-up limitation, even in the presence of computational imaging algorithms. These results are supported by a thorough analysis of both the raw data prior to the reconstruction process and the final reconstructed lifetime maps.
In the last years, single-pixel imaging (SPI) has been extensively utilized in fluorescence lifetime imaging (FLIM) experiments. In this context, to attain high temporal resolution, time-correlated single photon counting (TCSPC) is typically adopted, with the major drawback of the pile-up phenomenon, that limits the photon count rate to 1-5% of the laser excitation rate. This clearly hinders the possibility of monitoring a wide variety of biological phenomena in real-time. In this paper, to the best of our knowledge, we apply for the first time to a single-pixel camera (SPC) a hardware-based method, that allows to completely avoid the onset of pile-up by matching the dead time of the employed single-photon avalanche diode (SPAD) detector to an integer multiple of the laser period. We therefore demonstrate that undistorted and high-fidelity lifetime maps can be acquired at count rates (40%) well above the classic pile-up limitation, even in the presence of computational imaging algorithms. These results are supported by a thorough analysis of both the raw data prior to the reconstruction process and the final reconstructed lifetime maps.In the last years, single-pixel imaging (SPI) has been extensively utilized in fluorescence lifetime imaging (FLIM) experiments. In this context, to attain high temporal resolution, time-correlated single photon counting (TCSPC) is typically adopted, with the major drawback of the pile-up phenomenon, that limits the photon count rate to 1-5% of the laser excitation rate. This clearly hinders the possibility of monitoring a wide variety of biological phenomena in real-time. In this paper, to the best of our knowledge, we apply for the first time to a single-pixel camera (SPC) a hardware-based method, that allows to completely avoid the onset of pile-up by matching the dead time of the employed single-photon avalanche diode (SPAD) detector to an integer multiple of the laser period. We therefore demonstrate that undistorted and high-fidelity lifetime maps can be acquired at count rates (40%) well above the classic pile-up limitation, even in the presence of computational imaging algorithms. These results are supported by a thorough analysis of both the raw data prior to the reconstruction process and the final reconstructed lifetime maps.
Author Farina, Serena
D’Andrea, Cosimo
Farina, Andrea
Rech, Ivan
Acconcia, Giulia
Ghezzi, Alberto
Labanca, Ivan
Author_xml – sequence: 1
  givenname: Serena
  orcidid: 0000-0001-6150-9108
  surname: Farina
  fullname: Farina, Serena
– sequence: 2
  givenname: Alberto
  orcidid: 0000-0001-9217-0303
  surname: Ghezzi
  fullname: Ghezzi, Alberto
– sequence: 3
  givenname: Ivan
  surname: Labanca
  fullname: Labanca, Ivan
– sequence: 4
  givenname: Giulia
  orcidid: 0000-0003-3190-4953
  surname: Acconcia
  fullname: Acconcia, Giulia
– sequence: 5
  givenname: Cosimo
  orcidid: 0000-0003-3366-6397
  surname: D’Andrea
  fullname: D’Andrea, Cosimo
– sequence: 6
  givenname: Andrea
  orcidid: 0000-0002-3180-6328
  surname: Farina
  fullname: Farina, Andrea
– sequence: 7
  givenname: Ivan
  orcidid: 0000-0002-1430-1010
  surname: Rech
  fullname: Rech, Ivan
BackLink https://www.ncbi.nlm.nih.gov/pubmed/40515223$$D View this record in MEDLINE/PubMed
BookMark eNplkN1LwzAUxYNM3Ic--A9IHlXoTJqkaR7HnB8w2EB9Lml2Myvph03L3H9vpZsIPt3L5cc595wxGhRlAQhdUjKlLOJ3q8VUCBEqeYJGlCgecBLLwZ99iMbefxBCuVTyDA05EVSEIRuh9TpzELQVtjUAtq4ta_AGCgPYZRaaLAec5XqbFVu8y5p3rPHLenYfpNrDBvvu7ABX2Rc4bHQOtT5Hp1Y7DxeHOUFvD4vX-VOwXD0-z2fLwIRx2AQs5pIarrQKidBgZSqU4hGLibZMCbahlqaMCmMUpOHG8siISAKPFTBNIsYm6LbXbYtK73fauaSqu0_rfUJJ8lNLUkLS19LB1z1c1eVnC75J8qxL6ZwuoGx9wkIaS8kUFR16dUDbNIfNr-ixsg646QFTl97XYP_5rhZH328PzHkG
Cites_doi 10.1109/JSTQE.2023.3316601
10.1364/OE.26.010550
10.1063/5.0135452
10.1063/1.4996690
10.1109/TIT.2005.862083
10.1109/MSP.2007.914730
10.1117/1.JBO.25.7.071203
10.1364/OL.434127
10.1364/OL.419381
10.1364/OE.24.017819
10.1109/TSP.2019.2914891
10.1016/j.pbiomolbio.2021.06.004
10.1063/1.4824196
10.1109/JSTQE.2007.902088
10.1364/BOE.396771
10.1063/5.0044774
10.1364/OPTICA.6.000341
10.1364/OE.24.009429
10.1364/OL.506378
10.1364/OE.519382
10.1364/OL.42.002822
10.1364/OE.403195
10.1002/jemt.20432
10.1364/OL.444815
10.1109/55.116955
ContentType Journal Article
DBID AAYXX
CITATION
NPM
7X8
ADTOC
UNPAY
DOI 10.1364/OE.555297
DatabaseName CrossRef
PubMed
MEDLINE - Academic
Unpaywall for CDI: Periodical Content
Unpaywall
DatabaseTitle CrossRef
PubMed
MEDLINE - Academic
DatabaseTitleList CrossRef
PubMed
MEDLINE - Academic
Database_xml – sequence: 1
  dbid: NPM
  name: PubMed
  url: https://proxy.k.utb.cz/login?url=http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed
  sourceTypes: Index Database
– sequence: 2
  dbid: UNPAY
  name: Unpaywall
  url: https://proxy.k.utb.cz/login?url=https://unpaywall.org/
  sourceTypes: Open Access Repository
DeliveryMethod fulltext_linktorsrc
Discipline Physics
EISSN 1094-4087
ExternalDocumentID 10.1364/oe.555297
40515223
10_1364_OE_555297
Genre Journal Article
GroupedDBID ---
123
29N
2WC
8SL
AAFWJ
AAWJZ
AAYXX
ACGFO
ADBBV
AEDJG
AENEX
AFPKN
AKGWG
ALMA_UNASSIGNED_HOLDINGS
ATHME
AYPRP
AZSQR
AZYMN
BAWUL
BCNDV
CITATION
CS3
DIK
DSZJF
DU5
E3Z
EBS
F5P
GROUPED_DOAJ
GX1
KQ8
M~E
OFLFD
OK1
OPJBK
OPLUZ
OVT
P2P
RNS
ROL
ROS
TR2
TR6
XSB
NPM
7X8
ADTOC
C1A
EJD
UNPAY
ID FETCH-LOGICAL-c282t-38471c49a9205aef7b59946380af3953d1f1b315cc9eb2df46c567e489e3a0633
IEDL.DBID UNPAY
ISSN 1094-4087
IngestDate Tue Aug 19 23:40:52 EDT 2025
Wed Jul 02 02:40:17 EDT 2025
Mon Jul 21 05:36:20 EDT 2025
Wed Oct 01 06:05:07 EDT 2025
IsDoiOpenAccess false
IsOpenAccess true
IsPeerReviewed true
IsScholarly true
Issue 11
Language English
LinkModel DirectLink
MergedId FETCHMERGED-LOGICAL-c282t-38471c49a9205aef7b59946380af3953d1f1b315cc9eb2df46c567e489e3a0633
Notes ObjectType-Article-1
SourceType-Scholarly Journals-1
ObjectType-Feature-2
content type line 23
ORCID 0000-0003-3190-4953
0000-0001-6150-9108
0000-0002-3180-6328
0000-0002-1430-1010
0000-0003-3366-6397
0000-0001-9217-0303
OpenAccessLink https://proxy.k.utb.cz/login?url=https://doi.org/10.1364/oe.555297
PMID 40515223
PQID 3218773915
PQPubID 23479
ParticipantIDs unpaywall_primary_10_1364_oe_555297
proquest_miscellaneous_3218773915
pubmed_primary_40515223
crossref_primary_10_1364_OE_555297
ProviderPackageCode CITATION
AAYXX
PublicationCentury 2000
PublicationDate 2025-06-02
2025-Jun-02
20250602
PublicationDateYYYYMMDD 2025-06-02
PublicationDate_xml – month: 06
  year: 2025
  text: 2025-06-02
  day: 02
PublicationDecade 2020
PublicationPlace United States
PublicationPlace_xml – name: United States
PublicationTitle Optics express
PublicationTitleAlternate Opt Express
PublicationYear 2025
References Farina (oe-33-11-22296-R22) 2021; 92
Ghezzi (oe-33-11-22296-R12) 2021; 46
Calisesi (oe-33-11-22296-R9) 2022; 168
Soldevila (oe-33-11-22296-R10) 2021; 46
Becker (oe-33-11-22296-R15) 2005
Patting (oe-33-11-22296-R18) 2007; 6583
Rousset (oe-33-11-22296-R11) 2018; 26
Farina (oe-33-11-22296-R23) 2022; 47
Datta (oe-33-11-22296-R14) 2020; 25
Becker (oe-33-11-22296-R13) 2007; 70
Ghezzi (oe-33-11-22296-R2) 2023; 8
Candes (oe-33-11-22296-R7) 2006; 52
Isbaner (oe-33-11-22296-R20) 2016; 24
Acconcia (oe-33-11-22296-R25) 2016; 24
Ghioni (oe-33-11-22296-R24) 2007; 13
Arlt (oe-33-11-22296-R17) 2013; 84
Duarte (oe-33-11-22296-R8) 2008; 25
Farina (oe-33-11-22296-R16) 2024; 30
Ipus (oe-33-11-22296-R4) 2024; 32
Ochoa (oe-33-11-22296-R3) 2020; 11
Cominelli (oe-33-11-22296-R19) 2017; 88
Ghezzi (oe-33-11-22296-R28) 2024; 49
Soldevila (oe-33-11-22296-R6) 2019; 6
Gibson (oe-33-11-22296-R1) 2020; 28
Rapp (oe-33-11-22296-R21) 2019; 67
Farina (oe-33-11-22296-R5) 2017; 42
Cova (oe-33-11-22296-R26) 1991; 12
References_xml – volume: 30
  start-page: 1
  year: 2024
  ident: oe-33-11-22296-R16
  publication-title: IEEE J. Sel. Top. Quantum Electron.
  doi: 10.1109/JSTQE.2023.3316601
– volume: 26
  start-page: 10550
  year: 2018
  ident: oe-33-11-22296-R11
  publication-title: Opt. Express
  doi: 10.1364/OE.26.010550
– volume: 8
  start-page: 046110
  year: 2023
  ident: oe-33-11-22296-R2
  publication-title: APL Photonics
  doi: 10.1063/5.0135452
– volume: 88
  start-page: 123701
  year: 2017
  ident: oe-33-11-22296-R19
  publication-title: Rev. Sci. Instrum.
  doi: 10.1063/1.4996690
– year: 2005
  ident: oe-33-11-22296-R15
– volume: 52
  start-page: 489
  year: 2006
  ident: oe-33-11-22296-R7
  publication-title: IEEE Trans. Inf. Theory
  doi: 10.1109/TIT.2005.862083
– volume: 25
  start-page: 83
  year: 2008
  ident: oe-33-11-22296-R8
  publication-title: IEEE Signal Process. Mag.
  doi: 10.1109/MSP.2007.914730
– volume: 25
  start-page: 1
  year: 2020
  ident: oe-33-11-22296-R14
  publication-title: J. Biomed. Opt.
  doi: 10.1117/1.JBO.25.7.071203
– volume: 46
  start-page: 4312
  year: 2021
  ident: oe-33-11-22296-R10
  publication-title: Opt. Lett.
  doi: 10.1364/OL.434127
– volume: 46
  start-page: 1353
  year: 2021
  ident: oe-33-11-22296-R12
  publication-title: Opt. Lett.
  doi: 10.1364/OL.419381
– volume: 6583
  start-page: 72
  year: 2007
  ident: oe-33-11-22296-R18
  article-title: Dead-time effects in tcspc data analysis
– volume: 24
  start-page: 17819
  year: 2016
  ident: oe-33-11-22296-R25
  publication-title: Opt. Express
  doi: 10.1364/OE.24.017819
– volume: 67
  start-page: 3471
  year: 2019
  ident: oe-33-11-22296-R21
  publication-title: IEEE Trans. Signal Process.
  doi: 10.1109/TSP.2019.2914891
– volume: 168
  start-page: 66
  year: 2022
  ident: oe-33-11-22296-R9
  publication-title: Prog. Biophys. Mol. Biol.
  doi: 10.1016/j.pbiomolbio.2021.06.004
– volume: 84
  start-page: 103105
  year: 2013
  ident: oe-33-11-22296-R17
  publication-title: Rev. Sci. Instrum.
  doi: 10.1063/1.4824196
– volume: 13
  start-page: 852
  year: 2007
  ident: oe-33-11-22296-R24
  publication-title: IEEE J. Sel. Top. Quantum Electron.
  doi: 10.1109/JSTQE.2007.902088
– volume: 11
  start-page: 5401
  year: 2020
  ident: oe-33-11-22296-R3
  publication-title: Biomed. Opt. Express
  doi: 10.1364/BOE.396771
– volume: 92
  start-page: 063702
  year: 2021
  ident: oe-33-11-22296-R22
  publication-title: Rev. Sci. Instrum.
  doi: 10.1063/5.0044774
– volume: 6
  start-page: 341
  year: 2019
  ident: oe-33-11-22296-R6
  publication-title: Optica
  doi: 10.1364/OPTICA.6.000341
– volume: 24
  start-page: 9429
  year: 2016
  ident: oe-33-11-22296-R20
  publication-title: Opt. Express
  doi: 10.1364/OE.24.009429
– volume: 49
  start-page: 278
  year: 2024
  ident: oe-33-11-22296-R28
  publication-title: Opt. Lett.
  doi: 10.1364/OL.506378
– volume: 32
  start-page: 13797
  year: 2024
  ident: oe-33-11-22296-R4
  publication-title: Opt. Express
  doi: 10.1364/OE.519382
– volume: 42
  start-page: 2822
  year: 2017
  ident: oe-33-11-22296-R5
  publication-title: Opt. Lett.
  doi: 10.1364/OL.42.002822
– volume: 28
  start-page: 28190
  year: 2020
  ident: oe-33-11-22296-R1
  publication-title: Opt. Express
  doi: 10.1364/OE.403195
– volume: 70
  start-page: 403
  year: 2007
  ident: oe-33-11-22296-R13
  publication-title: Microsc. Res. Tech.
  doi: 10.1002/jemt.20432
– volume: 47
  start-page: 82
  year: 2022
  ident: oe-33-11-22296-R23
  publication-title: Opt. Lett.
  doi: 10.1364/OL.444815
– volume: 12
  start-page: 685
  year: 1991
  ident: oe-33-11-22296-R26
  publication-title: IEEE Electron Device Lett.
  doi: 10.1109/55.116955
SSID ssj0014797
Score 2.4809597
Snippet In the last years, single-pixel imaging (SPI) has been extensively utilized in fluorescence lifetime imaging (FLIM) experiments. In this context, to attain...
SourceID unpaywall
proquest
pubmed
crossref
SourceType Open Access Repository
Aggregation Database
Index Database
StartPage 22296
Title Pile-up free fluorescence lifetime imaging with a SPAD-based single pixel camera
URI https://www.ncbi.nlm.nih.gov/pubmed/40515223
https://www.proquest.com/docview/3218773915
https://doi.org/10.1364/oe.555297
UnpaywallVersion publishedVersion
Volume 33
hasFullText 1
inHoldings 1
isFullTextHit
isPrint
journalDatabaseRights – providerCode: PRVAFT
  databaseName: Open Access Digital Library
  customDbUrl:
  eissn: 1094-4087
  dateEnd: 99991231
  omitProxy: true
  ssIdentifier: ssj0014797
  issn: 1094-4087
  databaseCode: KQ8
  dateStart: 19970101
  isFulltext: true
  titleUrlDefault: http://grweb.coalliance.org/oadl/oadl.html
  providerName: Colorado Alliance of Research Libraries
– providerCode: PRVAON
  databaseName: DOAJ Directory of Open Access Journals
  customDbUrl:
  eissn: 1094-4087
  dateEnd: 99991231
  omitProxy: true
  ssIdentifier: ssj0014797
  issn: 1094-4087
  databaseCode: DOA
  dateStart: 19980101
  isFulltext: true
  titleUrlDefault: https://www.doaj.org/
  providerName: Directory of Open Access Journals
– providerCode: PRVBFR
  databaseName: Free Medical Journals
  customDbUrl:
  eissn: 1094-4087
  dateEnd: 99991231
  omitProxy: true
  ssIdentifier: ssj0014797
  issn: 1094-4087
  databaseCode: DIK
  dateStart: 19970101
  isFulltext: true
  titleUrlDefault: http://www.freemedicaljournals.com
  providerName: Flying Publisher
– providerCode: PRVFQY
  databaseName: GFMER Free Medical Journals
  customDbUrl:
  eissn: 1094-4087
  dateEnd: 99991231
  omitProxy: true
  ssIdentifier: ssj0014797
  issn: 1094-4087
  databaseCode: GX1
  dateStart: 0
  isFulltext: true
  titleUrlDefault: http://www.gfmer.ch/Medical_journals/Free_medical.php
  providerName: Geneva Foundation for Medical Education and Research
– providerCode: PRVHPJ
  databaseName: ROAD: Directory of Open Access Scholarly Resources
  customDbUrl:
  eissn: 1094-4087
  dateEnd: 99991231
  omitProxy: true
  ssIdentifier: ssj0014797
  issn: 1094-4087
  databaseCode: M~E
  dateStart: 19970101
  isFulltext: true
  titleUrlDefault: https://road.issn.org
  providerName: ISSN International Centre
link http://utb.summon.serialssolutions.com/2.0.0/link/0/eLvHCXMwjV1LT9wwEB7BogpxgD4oLCrI0F69JOtxHB9XZRGqBF2prERPkePY0qohWS0b8Tjw27GTLOUhIS45WbHlsTXfzHi-D-CHxjgUhqUUrQwoolVURjqmWRpnofaKcML3Dp-eRSdj_HXBL5Zgf9EL87R-zyI8LE2Pc96XYhlWIu7gdgdWxmejwd-6iinRxT-xaBmDno1_7mdegcc1WK2Kqbq9Vnn-xKEcb_xvy2nekfzrVfO0p-9esDS-udaPsN7CSTJo7P8JlkzxGT7Uzzr11RcYjdylp9WU2JkxxOZVOavpm7Qh-cQaLyxPJpe1UBHxGVmiyJ_R4Ih635YRn0bIDZlObkxOtPLpq00YHw_Pf57QVkOBahdMzSnz3kejVLIfcGWsSLmU6C5doCyTnGWhDVMWcq2li7Ezi5HmkTAYS8OUgy_sK3SKsjDbQFCzwMZ9m6pYY-YiJd5HLjLtEBYGCqMuHCx2PJk2VBlJXS-LMPk9TJqt6cL-whaJO8i-OqEKU1ZXCXNgQwjPV9-FrcZIj79Br0TjgEwXvj9a7dUcpWnn2HnXqG_Qmc8qs-swxTzdq2Nx9z29H-61J-wBS-zK1w
linkProvider Unpaywall
linkToUnpaywall http://utb.summon.serialssolutions.com/2.0.0/link/0/eLvHCXMwjV3fT9swED5BK4T2MMbGRtE2GbZXl6Q-x_FjNUAIiVIJKsFT5Di2VJElVWkE7K_HTlJ-DAnxbtmWz9Z9d-f7PoDfGuNQGJZStDKgiFZRGemYZmmchdorwgnfO3w6io4neHLJL1dgd9kL87x-zyLcL02fcz6QYhW6EXdwuwPdyWg8vKqrmBJd_BOLljHoxfiXfuYVePwA61UxU_e3Ks-fOZSjjae2nOYfyXW_WqR9_e8_lsY39_oJPrZwkgwb-2_Ciik-w1r9rVPffIHx2D16Ws2InRtDbF6V85q-SRuST63xwvJk-rcWKiI-I0sUOR8PD6j3bRnxaYTckNn0zuREK5--2oLJ0eHFn2PaaihQ7YKpBWXe-2iUSg4CrowVKZcS3aMLlGWSsyy0YcpCrrV0MXZmMdI8EgZjaZhy8IV9hU5RFmYbCGoW2HhgUxVrzFykxAfIRaYdwsJAYdSDveWJJ7OGKiOp62URJmeHSXM0Pdhd2iJxF9lXJ1RhyuomYQ5sCOH56nvwrTHS4zTolWgckOnBr0ervVqjNO0aO-8a9R06i3llfjhMsUh_trfqAdsJyLE
openUrl ctx_ver=Z39.88-2004&ctx_enc=info%3Aofi%2Fenc%3AUTF-8&rfr_id=info%3Asid%2Fsummon.serialssolutions.com&rft_val_fmt=info%3Aofi%2Ffmt%3Akev%3Amtx%3Ajournal&rft.genre=article&rft.atitle=Pile-up+free+fluorescence+lifetime+imaging+with+a+SPAD-based+single+pixel+camera&rft.jtitle=Optics+express&rft.au=Farina%2C+Serena&rft.au=Ghezzi%2C+Alberto&rft.au=Labanca%2C+Ivan&rft.au=Acconcia%2C+Giulia&rft.date=2025-06-02&rft.eissn=1094-4087&rft.volume=33&rft.issue=11&rft.spage=22296&rft_id=info:doi/10.1364%2FOE.555297&rft_id=info%3Apmid%2F40515223&rft.externalDocID=40515223
thumbnail_l http://covers-cdn.summon.serialssolutions.com/index.aspx?isbn=/lc.gif&issn=1094-4087&client=summon
thumbnail_m http://covers-cdn.summon.serialssolutions.com/index.aspx?isbn=/mc.gif&issn=1094-4087&client=summon
thumbnail_s http://covers-cdn.summon.serialssolutions.com/index.aspx?isbn=/sc.gif&issn=1094-4087&client=summon