Self-supervised feature learning for cardiac Cine MR image reconstruction

• Published in: IEEE transactions on medical imaging Vol. 44; no. 9; p. 1
• Main Authors: Xu, Siying, Fruh, Marcel, Hammernik, Kerstin, Lingg, Andreas, Kubler, Jens, Krumm, Patrick, Rueckert, Daniel, Gatidis, Sergios, Kustner, Thomas
• Format: Journal Article
• Language: English
• Published: United States IEEE 01.09.2025
• Subjects: Adult; Algorithms; cardiac Cine MRI; Contrastive learning; Data mining; Deep Learning; Feature extraction; feature learning; Female; Heart - diagnostic imaging; Humans; Image Processing, Computer-Assisted - methods; Image reconstruction; Imaging; Magnetic resonance imaging; Magnetic Resonance Imaging, Cine - methods; Male; MRI reconstruction; Reconstruction algorithms; Representation learning; self-supervised learning; Sensitivity; Supervised Machine Learning; Training
• ISSN: 0278-0062; 1558-254X; 1558-254X
• DOI: 10.1109/TMI.2025.3570226

We propose a self-supervised feature learning assisted reconstruction (SSFL-Recon) framework for MRI reconstruction to address the limitation of existing supervised learning methods. Although recent deep learning-based methods have shown promising performance in MRI reconstruction, most require fully-sampled images for supervised learning, which is challenging in practice considering long acquisition times under respiratory or organ motion. Moreover, nearly all fully-sampled datasets are obtained from conventional reconstruction of mildly accelerated datasets, thus potentially biasing the achievable performance. The numerous undersampled datasets with different accelerations in clinical practice, hence, remain underutilized. To address these issues, we first train a self-supervised feature extractor on undersampled images to learn sampling-insensitive features. The pre-learned features are subsequently embedded in the self-supervised reconstruction network to assist in removing artifacts. Experiments were conducted retrospectively on an in-house 2D cardiac Cine dataset, including 91 cardiovascular patients and 38 healthy subjects. The results demonstrate that the proposed SSFL-Recon framework outperforms existing self-supervised MRI reconstruction methods and even exhibits comparable or better performance to supervised learning up to 16× retrospective undersampling. The feature learning strategy can effectively extract global representations, which have proven beneficial in removing artifacts and increasing generalization ability during reconstruction.