Linking Transcriptional Dynamics of Peat Microbiomes to Methane Fluxes during a Summer Drought in Two Rewetted Fens

Rewetted peatlands are reestablished hot spots for CH4 emissions, which are subject to increased drought events in the course of climate change. However, the dynamics of soil methane-cycling microbiomes in rewetted peatlands during summer drought are still poorly characterized. Using a quantitative...

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Published in	Environmental science & technology Vol. 57; no. 12; pp. 5089 - 5101
Main Authors	Wang, Haitao, Jurasinski, Gerald, Täumer, Jana, Kuß, Andreas W., Groß, Verena, Köhn, Daniel, Günther, Anke, Urich, Tim
Format	Journal Article
Language	English
Published	United States American Chemical Society 28.03.2023
Subjects	Abundance Biogeochemical Cycling Climate change Community structure Correlation Cycles Drought Droughts Emissions environmental science Euryarchaeota Fens Fluxes Germany Methane Methanogenic bacteria methanogens Methanotrophic bacteria methanotrophs microbiome Microbiomes Microbiota Peat Peatlands Percolation rRNA Soil Soil dynamics Soil Microbiology Summer technology transcription (genetics) transcriptomics Germany methanotroph mcrA methanogen peat soil pmoA CH4 quantitative metatranscriptomics
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ISSN	0013-936X 1520-5851 1520-5851
DOI	10.1021/acs.est.2c07461

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Abstract	Rewetted peatlands are reestablished hot spots for CH4 emissions, which are subject to increased drought events in the course of climate change. However, the dynamics of soil methane-cycling microbiomes in rewetted peatlands during summer drought are still poorly characterized. Using a quantitative metatranscriptomic approach, we investigated the changes in the transcript abundances of methanogen and methanotroph rRNA, as well as mcrA and pmoA mRNA before, during, and after the 2018 summer drought in a coastal and a percolation fen in northern Germany. Drought changed the community structure of methane-cycling microbiomes and decreased the CH4 fluxes as well as the rRNA and mRNA transcript abundances of methanogens and methanotrophs, but they showed no recovery or increase after the drought ended. The rRNA transcript abundance of methanogens was not correlated with CH4 fluxes in both fens. In the percolation fen, however, the mcrA transcript abundance showed a positive and significant correlation with CH4 fluxes. Importantly, when integrating pmoA abundance, a stronger correlation was observed between CH4 fluxes and mcrA/pmoA, suggesting that relationships between methanogens and methanotrophs are the key determinant of CH4 turnover. Our study provides a comprehensive understanding of the methane-cycling microbiome feedbacks to drought events in rewetted peatlands.
AbstractList	Rewetted peatlands are reestablished hot spots for CH₄ emissions, which are subject to increased drought events in the course of climate change. However, the dynamics of soil methane-cycling microbiomes in rewetted peatlands during summer drought are still poorly characterized. Using a quantitative metatranscriptomic approach, we investigated the changes in the transcript abundances of methanogen and methanotroph rRNA, as well as mcrA and pmoA mRNA before, during, and after the 2018 summer drought in a coastal and a percolation fen in northern Germany. Drought changed the community structure of methane-cycling microbiomes and decreased the CH₄ fluxes as well as the rRNA and mRNA transcript abundances of methanogens and methanotrophs, but they showed no recovery or increase after the drought ended. The rRNA transcript abundance of methanogens was not correlated with CH₄ fluxes in both fens. In the percolation fen, however, the mcrA transcript abundance showed a positive and significant correlation with CH₄ fluxes. Importantly, when integrating pmoA abundance, a stronger correlation was observed between CH₄ fluxes and mcrA/pmoA, suggesting that relationships between methanogens and methanotrophs are the key determinant of CH₄ turnover. Our study provides a comprehensive understanding of the methane-cycling microbiome feedbacks to drought events in rewetted peatlands. Rewetted peatlands are reestablished hot spots for CH4 emissions, which are subject to increased drought events in the course of climate change. However, the dynamics of soil methane-cycling microbiomes in rewetted peatlands during summer drought are still poorly characterized. Using a quantitative metatranscriptomic approach, we investigated the changes in the transcript abundances of methanogen and methanotroph rRNA, as well as mcrA and pmoA mRNA before, during, and after the 2018 summer drought in a coastal and a percolation fen in northern Germany. Drought changed the community structure of methane-cycling microbiomes and decreased the CH4 fluxes as well as the rRNA and mRNA transcript abundances of methanogens and methanotrophs, but they showed no recovery or increase after the drought ended. The rRNA transcript abundance of methanogens was not correlated with CH4 fluxes in both fens. In the percolation fen, however, the mcrA transcript abundance showed a positive and significant correlation with CH4 fluxes. Importantly, when integrating pmoA abundance, a stronger correlation was observed between CH4 fluxes and mcrA/pmoA, suggesting that relationships between methanogens and methanotrophs are the key determinant of CH4 turnover. Our study provides a comprehensive understanding of the methane-cycling microbiome feedbacks to drought events in rewetted peatlands.Rewetted peatlands are reestablished hot spots for CH4 emissions, which are subject to increased drought events in the course of climate change. However, the dynamics of soil methane-cycling microbiomes in rewetted peatlands during summer drought are still poorly characterized. Using a quantitative metatranscriptomic approach, we investigated the changes in the transcript abundances of methanogen and methanotroph rRNA, as well as mcrA and pmoA mRNA before, during, and after the 2018 summer drought in a coastal and a percolation fen in northern Germany. Drought changed the community structure of methane-cycling microbiomes and decreased the CH4 fluxes as well as the rRNA and mRNA transcript abundances of methanogens and methanotrophs, but they showed no recovery or increase after the drought ended. The rRNA transcript abundance of methanogens was not correlated with CH4 fluxes in both fens. In the percolation fen, however, the mcrA transcript abundance showed a positive and significant correlation with CH4 fluxes. Importantly, when integrating pmoA abundance, a stronger correlation was observed between CH4 fluxes and mcrA/pmoA, suggesting that relationships between methanogens and methanotrophs are the key determinant of CH4 turnover. Our study provides a comprehensive understanding of the methane-cycling microbiome feedbacks to drought events in rewetted peatlands. Rewetted peatlands are reestablished hot spots for CH4 emissions, which are subject to increased drought events in the course of climate change. However, the dynamics of soil methane-cycling microbiomes in rewetted peatlands during summer drought are still poorly characterized. Using a quantitative metatranscriptomic approach, we investigated the changes in the transcript abundances of methanogen and methanotroph rRNA, as well as mcrA and pmoA mRNA before, during, and after the 2018 summer drought in a coastal and a percolation fen in northern Germany. Drought changed the community structure of methane-cycling microbiomes and decreased the CH4 fluxes as well as the rRNA and mRNA transcript abundances of methanogens and methanotrophs, but they showed no recovery or increase after the drought ended. The rRNA transcript abundance of methanogens was not correlated with CH4 fluxes in both fens. In the percolation fen, however, the mcrA transcript abundance showed a positive and significant correlation with CH4 fluxes. Importantly, when integrating pmoA abundance, a stronger correlation was observed between CH4 fluxes and mcrA/pmoA, suggesting that relationships between methanogens and methanotrophs are the key determinant of CH4 turnover. Our study provides a comprehensive understanding of the methane-cycling microbiome feedbacks to drought events in rewetted peatlands. Rewetted peatlands are reestablished hot spots for CH emissions, which are subject to increased drought events in the course of climate change. However, the dynamics of soil methane-cycling microbiomes in rewetted peatlands during summer drought are still poorly characterized. Using a quantitative metatranscriptomic approach, we investigated the changes in the transcript abundances of methanogen and methanotroph rRNA, as well as and mRNA before, during, and after the 2018 summer drought in a coastal and a percolation fen in northern Germany. Drought changed the community structure of methane-cycling microbiomes and decreased the CH fluxes as well as the rRNA and mRNA transcript abundances of methanogens and methanotrophs, but they showed no recovery or increase after the drought ended. The rRNA transcript abundance of methanogens was not correlated with CH fluxes in both fens. In the percolation fen, however, the transcript abundance showed a positive and significant correlation with CH fluxes. Importantly, when integrating abundance, a stronger correlation was observed between CH fluxes and / , suggesting that relationships between methanogens and methanotrophs are the key determinant of CH turnover. Our study provides a comprehensive understanding of the methane-cycling microbiome feedbacks to drought events in rewetted peatlands.
Author	Kuß, Andreas W. Groß, Verena Wang, Haitao Urich, Tim Täumer, Jana Köhn, Daniel Jurasinski, Gerald Günther, Anke
AuthorAffiliation	Interdisciplinary Faculty Human Molecular Genetics Group, Department of Functional Genomics Peatland Science University of Rostock Landscape Ecology Institute of Microbiology University of Greifswald University Medicine Greifswald
AuthorAffiliation_xml	– name: University of Greifswald – name: Human Molecular Genetics Group, Department of Functional Genomics – name: Landscape Ecology – name: University Medicine Greifswald – name: Peatland Science – name: Institute of Microbiology – name: Interdisciplinary Faculty – name: University of Rostock
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CitedBy_id	crossref_primary_10_1016_j_geoderma_2024_116994 crossref_primary_10_1016_j_jhazmat_2024_133921 crossref_primary_10_1038_s43247_024_01635_w crossref_primary_10_1016_j_jclepro_2024_142060 crossref_primary_10_1016_j_watres_2025_123169 crossref_primary_10_1029_2023GL107250 crossref_primary_10_1016_j_jhazmat_2025_137430 crossref_primary_10_1016_j_scitotenv_2024_173480 crossref_primary_10_3390_agronomy14102302
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Snippet	Rewetted peatlands are reestablished hot spots for CH4 emissions, which are subject to increased drought events in the course of climate change. However, the... Rewetted peatlands are reestablished hot spots for CH emissions, which are subject to increased drought events in the course of climate change. However, the... Rewetted peatlands are reestablished hot spots for CH₄ emissions, which are subject to increased drought events in the course of climate change. However, the...
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SubjectTerms	Abundance Biogeochemical Cycling Climate change Community structure Correlation Cycles Drought Droughts Emissions environmental science Euryarchaeota Fens Fluxes Germany Methane Methanogenic bacteria methanogens Methanotrophic bacteria methanotrophs microbiome Microbiomes Microbiota Peat Peatlands Percolation rRNA Soil Soil dynamics Soil Microbiology Summer technology transcription (genetics) transcriptomics
Title	Linking Transcriptional Dynamics of Peat Microbiomes to Methane Fluxes during a Summer Drought in Two Rewetted Fens
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