Draft genomes of Aeromonas caviae from patients with cholera-like illness during the 2022–2023 cholera outbreak in Malawi

Aeromonas caviae is an increasingly recognized etiological agent of acute gastroenteritis. Here, we report five draft genomes of A. caviae isolated from suspected cholera cases during the 2022–2023 cholera outbreak in Malawi.

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Published inMicrobiology resource announcements Vol. 12; no. 10; p. e0058023
Main Authors Jere, Khuzwayo C., Chibwe, Innocent, Chaima, David, Kasambala, Watipaso, Mhango, Chimwemwe, Bitilinyu-Bangoh, Joseph, Mvula, Bernard, Kipandula, Wakisa, Kamng'ona, Arox W., Steele, A. Duncan, Chauma-Mwale, Annie, Hungerford, Daniel, Kagoli, Matthew, Nyaga, Martin M., Dube, Queen, French, Neil, Cunliffe, Nigel A., Msefula, Chisomo L., Chaguza, Chrispin
Format Journal Article
LanguageEnglish
Published United States American Society for Microbiology 19.10.2023
Subjects
Clinical Microbiology
Genome Sequences
sub-Saharan Africa
cholera-like illness
Aeromonas caviae
cholera outbreak
Malawi
whole-genome sequence
Online AccessGet full text
ISSN2576-098X
2576-098X
DOI10.1128/MRA.00580-23

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Abstract Aeromonas caviae is an increasingly recognized etiological agent of acute gastroenteritis. Here, we report five draft genomes of A. caviae isolated from suspected cholera cases during the 2022–2023 cholera outbreak in Malawi.
AbstractList is an increasingly recognized etiological agent of acute gastroenteritis. Here, we report five draft genomes of isolated from suspected cholera cases during the 2022-2023 cholera outbreak in Malawi.
Aeromonas caviae is an increasingly recognized etiological agent of acute gastroenteritis. Here, we report five draft genomes of A. caviae isolated from suspected cholera cases during the 2022–2023 cholera outbreak in Malawi.
Aeromonas caviae is an increasingly recognized etiological agent of acute gastroenteritis. Here, we report five draft genomes of A. caviae isolated from suspected cholera cases during the 2022–2023 cholera outbreak in Malawi.
Aeromonas caviae is an increasingly recognized etiological agent of acute gastroenteritis. Here, we report five draft genomes of A. caviae isolated from suspected cholera cases during the 2022-2023 cholera outbreak in Malawi.Aeromonas caviae is an increasingly recognized etiological agent of acute gastroenteritis. Here, we report five draft genomes of A. caviae isolated from suspected cholera cases during the 2022-2023 cholera outbreak in Malawi.
Author Chibwe, Innocent
Cunliffe, Nigel A.
Chauma-Mwale, Annie
Kagoli, Matthew
Msefula, Chisomo L.
Bitilinyu-Bangoh, Joseph
Kasambala, Watipaso
Hungerford, Daniel
Nyaga, Martin M.
Jere, Khuzwayo C.
French, Neil
Mvula, Bernard
Dube, Queen
Chaguza, Chrispin
Mhango, Chimwemwe
Chaima, David
Kipandula, Wakisa
Kamng'ona, Arox W.
Steele, A. Duncan
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  surname: Jere
  fullname: Jere, Khuzwayo C.
  organization: Department of Clinical Infection, Microbiology and Immunology, Institute of Infection, Veterinary and Ecological Sciences, University of Liverpool, Liverpool, United Kingdom, Malawi-Liverpool-Wellcome Research Programme, Kamuzu University of Health Sciences, Blantyre, Malawi, Department of Medical Laboratory Sciences, Faculty of Biomedical Sciences and Health Profession, Kamuzu University of Health Sciences, Blantyre, Malawi, NIHR Global Health Research Group on Gastrointestinal Infections, University of Liverpool, Liverpool, Merseyside, United Kingdom
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  organization: Department of Pathology, School of Medicine and Oral Health, Kamuzu University of Health Sciences, Blantyre, Malawi
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  givenname: Watipaso
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  fullname: Kasambala, Watipaso
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  fullname: Mhango, Chimwemwe
  organization: Malawi-Liverpool-Wellcome Research Programme, Kamuzu University of Health Sciences, Blantyre, Malawi, Department of Biomedical Sciences, School of Life Sciences and Allied Health Professions, Kamuzu University of Health Sciences, Blantyre, Malawi
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  organization: Department of Medical Laboratory Sciences, Faculty of Biomedical Sciences and Health Profession, Kamuzu University of Health Sciences, Blantyre, Malawi
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  givenname: Arox W.
  surname: Kamng'ona
  fullname: Kamng'ona, Arox W.
  organization: Department of Biomedical Sciences, School of Life Sciences and Allied Health Professions, Kamuzu University of Health Sciences, Blantyre, Malawi
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  givenname: A. Duncan
  surname: Steele
  fullname: Steele, A. Duncan
  organization: Diarrhoeal Pathogens Research Unit, Sefako Makgatho Health Sciences University, Medunsa, Pretoria, South Africa
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  givenname: Annie
  surname: Chauma-Mwale
  fullname: Chauma-Mwale, Annie
  organization: National Microbiology Reference Laboratory, Public Health Institute of Malawi, Lilongwe, Malawi
– sequence: 12
  givenname: Daniel
  surname: Hungerford
  fullname: Hungerford, Daniel
  organization: Department of Clinical Infection, Microbiology and Immunology, Institute of Infection, Veterinary and Ecological Sciences, University of Liverpool, Liverpool, United Kingdom, NIHR Global Health Research Group on Gastrointestinal Infections, University of Liverpool, Liverpool, Merseyside, United Kingdom
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  givenname: Matthew
  surname: Kagoli
  fullname: Kagoli, Matthew
  organization: National Microbiology Reference Laboratory, Public Health Institute of Malawi, Lilongwe, Malawi
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  givenname: Martin M.
  surname: Nyaga
  fullname: Nyaga, Martin M.
  organization: Next Generation Sequencing Unit and Division of Virology, Faculty of Health Sciences, University of the Free State, Bloemfontein, Free State, South Africa
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  givenname: Queen
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  fullname: Dube, Queen
  organization: Malawi Ministry of Health, Lilongwe, Malawi
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  surname: French
  fullname: French, Neil
  organization: Department of Clinical Infection, Microbiology and Immunology, Institute of Infection, Veterinary and Ecological Sciences, University of Liverpool, Liverpool, United Kingdom, Department of Pathology, School of Medicine and Oral Health, Kamuzu University of Health Sciences, Blantyre, Malawi
– sequence: 17
  givenname: Nigel A.
  surname: Cunliffe
  fullname: Cunliffe, Nigel A.
  organization: Department of Clinical Infection, Microbiology and Immunology, Institute of Infection, Veterinary and Ecological Sciences, University of Liverpool, Liverpool, United Kingdom, NIHR Global Health Research Group on Gastrointestinal Infections, University of Liverpool, Liverpool, Merseyside, United Kingdom
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  givenname: Chisomo L.
  surname: Msefula
  fullname: Msefula, Chisomo L.
  organization: NIHR Global Health Research Group on Gastrointestinal Infections, University of Liverpool, Liverpool, Merseyside, United Kingdom, Department of Pathology, School of Medicine and Oral Health, Kamuzu University of Health Sciences, Blantyre, Malawi
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  orcidid: 0000-0002-2108-1757
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Cites_doi 10.1590/s0036-46652012000600001
10.1371/journal.pone.0163962
10.1007/s13312-013-0241-7
10.1186/s13256-018-1603-5
10.1001/archinte.137.10.1461
10.1089/cmb.2012.0021
10.1128/genomeA.00524-15
10.1099/mgen.0.000056
10.1186/gb-2014-15-3-r46
10.1093/nar/gkw569
10.1371/journal.pbio.3002151
10.1093/molbev/msp077
10.1016/j.jinf.2010.12.003
10.14806/ej.17.1.200
10.1186/s12879-021-06784-3
10.1136/bmj.p328
10.1016/S2666-5247(22)00131-8
10.1128/AEM.00708-11
10.1101/gr.186072.114
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Copyright Copyright © 2023 Jere et al.
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Issue 10
Keywords sub-Saharan Africa
cholera-like illness
Aeromonas caviae
cholera outbreak
Malawi
whole-genome sequence
Language English
License This is an open-access article distributed under the terms of the Creative Commons Attribution 4.0 International license. https://creativecommons.org/licenses/by/4.0
This is an open-access article distributed under the terms of the Creative Commons Attribution 4.0 International license.
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content type line 23
Khuzwayo C. Jere and Innocent Chibwe are joint first authors. The order of the first authors was decided based on their contribution to drafting the initial version of the manuscript.
The authors declare no conflict of interest.
Chisomo L. Msefula and Chrispin Chaguza are joint senior authors.
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References e_1_3_4_3_2
e_1_3_4_2_2
e_1_3_4_9_2
e_1_3_4_8_2
e_1_3_4_7_2
e_1_3_4_6_2
e_1_3_4_5_2
e_1_3_4_4_2
e_1_3_4_11_2
e_1_3_4_12_2
e_1_3_4_20_2
e_1_3_4_10_2
e_1_3_4_15_2
e_1_3_4_16_2
e_1_3_4_13_2
e_1_3_4_14_2
e_1_3_4_19_2
e_1_3_4_17_2
e_1_3_4_18_2
Page, AJ, Taylor, B, Delaney, AJ, Soares, J, Seemann, T, Keane, JA, Harris, SR (B15) 2016; 2
Parks, DH, Imelfort, M, Skennerton, CT, Hugenholtz, P, Tyson, GW (B19) 2015; 25
Bagcchi, S (B8) 2022; 3
Tatusova, T, DiCuccio, M, Badretdin, A, Chetvernin, V, Nawrocki, EP, Zaslavsky, L, Lomsadze, A, Pruitt, KD, Borodovsky, M, Ostell, J (B18) 2016; 44
Martino, ME, Fasolato, L, Montemurro, F, Rosteghin, M, Manfrin, A, Patarnello, T, Novelli, E, Cardazzo, B (B13) 2011; 77
Price, MN, Dehal, PS, Arkin, AP (B16) 2009; 26
Wise, J (B9) 2023; 380
Kumar, KJ, Kumar, GSV (B5) 2013; 50
Moriel, B, Cruz, LM, Dallagassa, CB, Faoro, H, de Souza, EM, Pedrosa, FO, Rego, FGM, Picheth, G, Fadel-Picheth, CMT (B14) 2015; 3
Greiner, M, Anagnostopoulos, A, Pohl, D, Zbinden, R, Zbinden, A (B4) 2021; 21
Wood, DE, Salzberg, SL (B11) 2014; 15
van Zwetselaar, M, Nyombi, B, Sonda, T, Kumburu, H, Chamba, N, Dekker, MCJ, Kilonzo, KG, Urasa, SJ, Mmbaga, BT (B6) 2018; 12
Bankevich, A, Nurk, S, Antipov, D, Gurevich, AA, Dvorkin, M, Kulikov, AS, Lesin, VM, Nikolenko, SI, Pham, S, Prjibelski, AD, Pyshkin, AV, Sirotkin, AV, Vyahhi, N, Tesler, G, Alekseyev, MA, Pevzner, PA (B12) 2012; 19
Shen, W, Le, S, Li, Y, Hu, F (B17) 2016; 11
Mendes-Marques, CL, Nascimento, LM do, Theophilo, GND, Hofer, E, Melo Neto, OP de, Leal, NC (B3) 2012; 54
Parker, JL, Shaw, JG (B1) 2011; 62
Gurwith, M, Bourque, C, Cameron, E, Forrest, G, Green, M (B2) 1977; 137
Chaguza, C, Chibwe, I, Chaima, D, Musicha, P, Ndeketa, L, Kasambara, W, Mhango, C, Mseka, UL, Bitilinyu-Bangoh, J, Mvula, B, Kipandula, W, Bonongwe, P, Munthali, RJ, Ngwira, S, Mwendera, CA, Kalizang’oma, A, Jambo, KC, Kambalame, D, Kamng’ona, AW, Steele, AD, Chauma-Mwale, A, Hungerford, D, Kagoli, M, Nyaga, MM, Dube, Q, French, N, Msefula, CL, Cunliffe, NA, Jere, KC, Doucette, M, Smole, S, Buzby, E, Hall, J, Ash, S, Harrington, R, Cofsky, S, Clancy, S, Kapsak, CJ, Sevinsky, J, Libuit, K, Park, DJ, Hemarajata, P, Garrigues, JM, Green, NM, Sierra-Patev, S, Carpenter-Azevedo, K, Huard, RC, Pearson, C, Incekara, K, Nishimura, C, Huang, JP, Gagnon, E, Reever, E, Razeq, J, Muyombwe, A, Borges, V, Ferreira, R, Sobral, D, Duarte, S, Santos, D, Vieira, L, Gomes, JP, Aquino, C, Savino, IM, Felton, K, Bajwa, M, Hayward, N, Miller, H, Naumann, A, Allman, R, Greer, N, Fall, A, Mostafa, HH, McHugh, MP, Maloney, DM, Dewar, R, Kenicer, J, Parker, A, Mathers, K, Wild, J, Cotton, S, Templeton, KE, Churchwell, G, Lee, PA, Pedrosa, M, McGruder, B, Schmedes, S, Plumb, MR, Wang, X, Barcellos, RB, Godinho, FMS, Salvato, RS, Ceniseros, A, Breban, MI, Grubaugh, ND, Gallagher, GR, Vogels, CBF (B7) 2023
Martin, M (B10) 2011; 17
References_xml – ident: e_1_3_4_4_2
  doi: 10.1590/s0036-46652012000600001
– ident: e_1_3_4_18_2
  doi: 10.1371/journal.pone.0163962
– ident: e_1_3_4_6_2
  doi: 10.1007/s13312-013-0241-7
– ident: e_1_3_4_7_2
  doi: 10.1186/s13256-018-1603-5
– ident: e_1_3_4_3_2
  doi: 10.1001/archinte.137.10.1461
– ident: e_1_3_4_13_2
  doi: 10.1089/cmb.2012.0021
– ident: e_1_3_4_15_2
  doi: 10.1128/genomeA.00524-15
– ident: e_1_3_4_16_2
  doi: 10.1099/mgen.0.000056
– ident: e_1_3_4_12_2
  doi: 10.1186/gb-2014-15-3-r46
– ident: e_1_3_4_19_2
  doi: 10.1093/nar/gkw569
– ident: e_1_3_4_8_2
  doi: 10.1371/journal.pbio.3002151
– ident: e_1_3_4_17_2
  doi: 10.1093/molbev/msp077
– ident: e_1_3_4_2_2
  doi: 10.1016/j.jinf.2010.12.003
– ident: e_1_3_4_11_2
  doi: 10.14806/ej.17.1.200
– ident: e_1_3_4_5_2
  doi: 10.1186/s12879-021-06784-3
– ident: e_1_3_4_10_2
  doi: 10.1136/bmj.p328
– ident: e_1_3_4_9_2
  doi: 10.1016/S2666-5247(22)00131-8
– ident: e_1_3_4_14_2
  doi: 10.1128/AEM.00708-11
– ident: e_1_3_4_20_2
  doi: 10.1101/gr.186072.114
– volume: 54
  start-page: 299
  year: 2012
  end-page: 304
  ident: B3
  article-title: Molecular characterization of Aeromonas spp. and Vibrio cholerae O1 isolated during a diarrhea outbreak
  publication-title: Rev Inst Med Trop Sao Paulo
  doi: 10.1590/s0036-46652012000600001
– year: 2023
  ident: B7
  article-title: Genomic insights into the 2022–2023 Vibrio cholerae outbreak in Malawi
  publication-title: bioRxiv
  doi: 10.1371/journal.pbio.3002151
– volume: 77
  start-page: 4986
  year: 2011
  end-page: 5000
  ident: B13
  article-title: Determination of microbial diversity of Aeromonas strains on the basis of multilocus sequence typing, phenotype, and presence of putative virulence genes
  publication-title: Appl Environ Microbiol
  doi: 10.1128/AEM.00708-11
– volume: 3
  year: 2015
  ident: B14
  article-title: Draft genome sequence of Aeromonas caviae 8LM, isolated from stool culture of a child with diarrhea
  publication-title: Genome Announc
  doi: 10.1128/genomeA.00524-15
– volume: 26
  start-page: 1641
  year: 2009
  end-page: 1650
  ident: B16
  article-title: FastTree: computing large minimum evolution trees with profiles instead of a distance matrix
  publication-title: Mol Biol Evol
  doi: 10.1093/molbev/msp077
– volume: 11
  year: 2016
  ident: B17
  article-title: SeqKit: a cross-platform and ultrafast toolkit for FASTA/Q file manipulation
  publication-title: PLoS One
  doi: 10.1371/journal.pone.0163962
– volume: 380
  start-page: 328
  year: 2023
  ident: B9
  article-title: Cholera: Malawi is in grip of its deadliest outbreak
  publication-title: BMJ
  doi: 10.1136/bmj.p328
– volume: 19
  start-page: 455
  year: 2012
  end-page: 477
  ident: B12
  article-title: SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing
  publication-title: J Comput Biol
  doi: 10.1089/cmb.2012.0021
– volume: 50
  start-page: 969
  year: 2013
  end-page: 970
  ident: B5
  article-title: Cholera-like illness due to Aeromonas caviae
  publication-title: Indian Pediatr
  doi: 10.1007/s13312-013-0241-7
– volume: 2
  year: 2016
  ident: B15
  article-title: Rapid efficient extraction of SNPs from multi-FASTA alignments
  publication-title: Microb Genom
  doi: 10.1099/mgen.0.000056
– volume: 25
  start-page: 1043
  year: 2015
  end-page: 1055
  ident: B19
  article-title: CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes
  publication-title: Genome Res
  doi: 10.1101/gr.186072.114
– volume: 62
  start-page: 109
  year: 2011
  end-page: 118
  ident: B1
  article-title: Aeromonas spp. clinical microbiology and disease
  publication-title: J Infect
  doi: 10.1016/j.jinf.2010.12.003
– volume: 17
  start-page: 10
  year: 2011
  ident: B10
  article-title: Cutadapt removes adapter sequences from high-throughput sequencing reads
  publication-title: EMBnet J
  doi: 10.14806/ej.17.1.200
– volume: 12
  start-page: 71
  year: 2018
  ident: B6
  article-title: Aeromonas caviae mimicking Vibrio cholerae infectious enteropathy in a cholera-endemic region with possible public health consequences: two case reports
  publication-title: J Med Case Rep
  doi: 10.1186/s13256-018-1603-5
– volume: 3
  year: 2022
  ident: B8
  article-title: Malawi takes on cholera outbreak amid cyclone devastation
  publication-title: Lancet Microbe
  doi: 10.1016/S2666-5247(22)00131-8
– volume: 21
  start-page: 1097
  year: 2021
  ident: B4
  article-title: A rare case of severe gastroenteritis caused by Aeromonas hydrophila after colectomy in a patient with anti-Hu syndrome: a case report
  publication-title: BMC Infect Dis
  doi: 10.1186/s12879-021-06784-3
– volume: 15
  year: 2014
  ident: B11
  article-title: Kraken: ultrafast metagenomic sequence classification using exact alignments
  publication-title: Genome Biol
  doi: 10.1186/gb-2014-15-3-r46
– volume: 137
  start-page: 1461
  year: 1977
  end-page: 1464
  ident: B2
  article-title: Cholera-like diarrhea in Canada. report of a case associated with enterotoxigenic Escherichia coli and a toxin-producing Aeromonas hydrophila
  publication-title: Arch Intern Med
  doi: 10.1001/archinte.137.10.1461
– volume: 44
  start-page: 6614
  year: 2016
  end-page: 6624
  ident: B18
  article-title: NCBI prokaryotic genome annotation pipeline
  publication-title: Nucleic Acids Res
  doi: 10.1093/nar/gkw569
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Snippet Aeromonas caviae is an increasingly recognized etiological agent of acute gastroenteritis. Here, we report five draft genomes of A. caviae isolated from...
is an increasingly recognized etiological agent of acute gastroenteritis. Here, we report five draft genomes of isolated from suspected cholera cases during...
Aeromonas caviae is an increasingly recognized etiological agent of acute gastroenteritis. Here, we report five draft genomes of A. caviae isolated from...
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StartPage e0058023
SubjectTerms Clinical Microbiology
Genome Sequences
Title Draft genomes of Aeromonas caviae from patients with cholera-like illness during the 2022–2023 cholera outbreak in Malawi
URI https://www.ncbi.nlm.nih.gov/pubmed/37768056
https://journals.asm.org/doi/10.1128/MRA.00580-23
https://www.proquest.com/docview/2870142852
https://pubmed.ncbi.nlm.nih.gov/PMC10586119
Volume 12
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