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    uShuffle: A useful tool for shuffling biological sequences while preserving the k-let counts
                                      
                                            Jiang, Minghui,                              Anderson, James,                              Gillespie, Joel,                              Mayne, Martin                              
Published in BMC bioinformatics (11.04.2008)
                   
      
      
                                                  Published in BMC bioinformatics (11.04.2008)
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          MUMmer4: A fast and versatile genome alignment system
                                      
                                            Marçais, Guillaume,                              Delcher, Arthur L.,                              Phillippy, Adam M.,                              Coston, Rachel,                              Salzberg, Steven L.,                              Zimin, Aleksey                              
Published in PLoS computational biology (01.01.2018)
                   
      
      
                                                  Published in PLoS computational biology (01.01.2018)
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          A Bayesian deconvolution strategy for immunoprecipitation-based DNA methylome analysis
                                      
                                            Down, Thomas A,                              Rakyan, Vardhman K,                              Turner, Daniel J,                              Flicek, Paul,                              Li, Heng,                              Kulesha, Eugene,                              Gräf, Stefan,                              Johnson, Nathan,                              Herrero, Javier,                              Tomazou, Eleni M,                              Thorne, Natalie P,                              Bäckdahl, Liselotte,                              Herberth, Marlis,                              Howe, Kevin L,                              Jackson, David K,                              Miretti, Marcos M,                              Marioni, John C,                              Birney, Ewan,                              Hubbard, Tim J P,                              Durbin, Richard,                              Tavaré, Simon,                              Beck, Stephan                              
Published in Nature biotechnology (01.07.2008)
                   
      
      
                                                  Published in Nature biotechnology (01.07.2008)
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          SVM-based prediction of linear B-cell epitopes using Bayes Feature Extraction
                                      
                                            Wee, Lawrence JK,                              Simarmata, Diane,                              Kam, Yiu-Wing,                              Ng, Lisa FP,                              Tong, Joo Chuan                              
Published in BMC genomics (02.12.2010)
                   
      
      
                                                  Published in BMC genomics (02.12.2010)
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          Integrated Genetic and Epigenetic Analysis Identifies Haplotype-Specific Methylation in the FTO Type 2 Diabetes and Obesity Susceptibility Locus
                                      
                                            Bell, Christopher G.,                              Finer, Sarah,                              Lindgren, Cecilia M.,                              Wilson, Gareth A.,                              Rakyan, Vardhman K.,                              Teschendorff, Andrew E.,                              Akan, Pelin,                              Stupka, Elia,                              Down, Thomas A.,                              Prokopenko, Inga,                              Morison, Ian M.,                              Mill, Jonathan,                              Pidsley, Ruth,                              Deloukas, Panos,                              Frayling, Timothy M.,                              Hattersley, Andrew T.,                              McCarthy, Mark I.,                              Beck, Stephan,                              Hitman, Graham A.                              
Published in PloS one (18.11.2010)
                   
      
      
                                                  Published in PloS one (18.11.2010)
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          Comparative phylogenomics of the food-borne pathogen Campylobacter jejuni reveals genetic markers predictive of infection source
                                      
                                            Champion, O.L,                              Gaunt, M.W,                              Gundogdu, O,                              Elmi, A,                              Witney, A.A,                              Hinds, J,                              Dorrell, N,                              Wren, B.W                              
Published in Proceedings of the National Academy of Sciences - PNAS (01.11.2005)
                   
      
      
                                                  Published in Proceedings of the National Academy of Sciences - PNAS (01.11.2005)
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          Estimates of penetrance for recurrent pathogenic copy-number variations
                                      
                                            Rosenfeld, Jill A.,                              Coe, Bradley P.,                              Eichler, Evan E.,                              Cuckle, Howard,                              Shaffer, Lisa G.                              
Published in Genetics in medicine (01.06.2013)
                   
      
      
                                                  Published in Genetics in medicine (01.06.2013)
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          A Decomposition Method for Global Evaluation of Shannon Entropy and Local Estimations of Algorithmic Complexity
                                      
                                            Zenil, Hector,                              Hernández-Orozco, Santiago,                              Kiani, Narsis A.,                              Soler-Toscano, Fernando,                              Rueda-Toicen, Antonio,                              Tegnér, Jesper                              
Published in Entropy (Basel, Switzerland) (01.08.2018)
                   
      
      
                                                  Published in Entropy (Basel, Switzerland) (01.08.2018)
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          A Versatile Statistical Analysis Algorithm to Detect Genome Copy Number Variation
                                      
                                            Daruwala, Raoul-Sam,                              Rudra, Archisman,                              Ostrer, Harry,                              Lucito, Robert,                              Wigler, Michael,                              Mishra, Bud,                              Schwartz, Jacob T.                              
Published in Proceedings of the National Academy of Sciences - PNAS (16.11.2004)
                   
      
      
                                                  Published in Proceedings of the National Academy of Sciences - PNAS (16.11.2004)
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          BAMQL: a query language for extracting reads from BAM files
                                      
                                            Masella, Andre P.,                              Lalansingh, Christopher M.,                              Sivasundaram, Pragash,                              Fraser, Michael,                              Bristow, Robert G.,                              Boutros, Paul C.                              
Published in BMC bioinformatics (11.08.2016)
                   
      
      
                                                  Published in BMC bioinformatics (11.08.2016)
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          Inferring cellular and molecular processes in single-cell data with non-negative matrix factorization using Python, R and GenePattern Notebook implementations of CoGAPS
                                      
                                            Johnson, Jeanette A. I.,                              Tsang, Ashley P.,                              Mitchell, Jacob T.,                              Zhou, David L.,                              Bowden, Julia,                              Davis-Marcisak, Emily,                              Sherman, Thomas,                              Liefeld, Ted,                              Loth, Melanie,                              Goff, Loyal A.,                              Zimmerman, Jacquelyn W.,                              Kinny-Köster, Ben,                              Jaffee, Elizabeth M.,                              Tamayo, Pablo,                              Mesirov, Jill P.,                              Reich, Michael,                              Fertig, Elana J.,                              Stein-O’Brien, Genevieve L.                              
Published in Nature protocols (01.12.2023)
                   
      
      
                                                  Published in Nature protocols (01.12.2023)
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