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uShuffle: A useful tool for shuffling biological sequences while preserving the k-let counts
Jiang, Minghui, Anderson, James, Gillespie, Joel, Mayne, Martin
Published in BMC bioinformatics (11.04.2008)
Published in BMC bioinformatics (11.04.2008)
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Journal Article
Evaluation of Microarray Preprocessing Algorithms Based on Concordance with RT-PCR in Clinical Samples
Gyorffy, Balazs, Molnar, Bela, Lage, Hermann, Szallasi, Zoltan, Eklund, Aron C.
Published in PloS one (21.05.2009)
Published in PloS one (21.05.2009)
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Journal Article
MUMmer4: A fast and versatile genome alignment system
Marçais, Guillaume, Delcher, Arthur L., Phillippy, Adam M., Coston, Rachel, Salzberg, Steven L., Zimin, Aleksey
Published in PLoS computational biology (01.01.2018)
Published in PLoS computational biology (01.01.2018)
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Journal Article
A Decomposition Method for Global Evaluation of Shannon Entropy and Local Estimations of Algorithmic Complexity
Zenil, Hector, Hernández-Orozco, Santiago, Kiani, Narsis A., Soler-Toscano, Fernando, Rueda-Toicen, Antonio, Tegnér, Jesper
Published in Entropy (Basel, Switzerland) (01.08.2018)
Published in Entropy (Basel, Switzerland) (01.08.2018)
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Journal Article
BAMQL: a query language for extracting reads from BAM files
Masella, Andre P., Lalansingh, Christopher M., Sivasundaram, Pragash, Fraser, Michael, Bristow, Robert G., Boutros, Paul C.
Published in BMC bioinformatics (11.08.2016)
Published in BMC bioinformatics (11.08.2016)
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Journal Article
Parallel comparison of Illumina RNA-Seq and Affymetrix microarray platforms on transcriptomic profiles generated from 5-aza-deoxy-cytidine treated HT-29 colon cancer cells and simulated datasets
Xu, Xiao, Zhang, Yuanhao, Williams, Jennie, Antoniou, Eric, McCombie, W Richard, Wu, Song, Zhu, Wei, Davidson, Nicholas O, Denoya, Paula, Li, Ellen
Published in BMC bioinformatics (28.06.2013)
Published in BMC bioinformatics (28.06.2013)
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Journal Article
Machine learning overcomes human bias in the discovery of self-assembling peptides
Batra, Rohit, Loeffler, Troy D., Chan, Henry, Srinivasan, Srilok, Cui, Honggang, Korendovych, Ivan V., Nanda, Vikas, Palmer, Liam C., Solomon, Lee A., Fry, H. Christopher, Sankaranarayanan, Subramanian K. R. S.
Published in Nature chemistry (01.12.2022)
Published in Nature chemistry (01.12.2022)
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Journal Article
Non-circular signals for nested array: sum–difference co-array and direction of arrival estimation algorithm
Yunfei, Wang, Jinqing, Shen, Xiaofei, Zhang, Yi, He, Xiangrui, Dai
Published in IET radar, sonar & navigation (01.01.2020)
Published in IET radar, sonar & navigation (01.01.2020)
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Journal Article
ShoRAH: estimating the genetic diversity of a mixed sample from next-generation sequencing data
Zagordi, Osvaldo, Bhattacharya, Arnab, Eriksson, Nicholas, Beerenwinkel, Niko
Published in BMC bioinformatics (26.04.2011)
Published in BMC bioinformatics (26.04.2011)
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Journal Article
GRIMM: GRaph IMputation and matching for HLA genotypes
Maiers, Martin, Halagan, Michael, Gragert, Loren, Bashyal, Pradeep, Brelsford, Jason, Schneider, Joel, Lutsker, Polina, Louzoun, Yoram
Published in Bioinformatics (15.09.2019)
Published in Bioinformatics (15.09.2019)
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Journal Article
Integration of microarray data and literature mining identifies a sex bias in DPP4+CD4+ T cells in HIV-1 infection
Stubbe, Hans Christian, Dahlke, Christine, Rotheneder, Katharina, Stirner, Renate, Roider, Julia, Conca, Raffaele, Seybold, Ulrich, Bogner, Johannes, Addo, Marylyn Martina, Draenert, Rika
Published in PloS one (18.09.2020)
Published in PloS one (18.09.2020)
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Journal Article
FreeContact: fast and free software for protein contact prediction from residue co-evolution
Kaján, László, Hopf, Thomas A, Kalaš, Matúš, Marks, Debora S, Rost, Burkhard
Published in BMC bioinformatics (26.03.2014)
Published in BMC bioinformatics (26.03.2014)
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Journal Article
Discovery of novel variants in genotyping arrays improves genotype retention and reduces ascertainment bias
Didion, John P, Yang, Hyuna, Sheppard, Keith, Fu, Chen-Ping, McMillan, Leonard, de Villena, Fernando Pardo-Manuel, Churchill, Gary A
Published in BMC genomics (19.01.2012)
Published in BMC genomics (19.01.2012)
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Journal Article