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    uShuffle: A useful tool for shuffling biological sequences while preserving the k-let counts
                                      
                                            Jiang, Minghui,                              Anderson, James,                              Gillespie, Joel,                              Mayne, Martin                              
Published in BMC bioinformatics (11.04.2008)
                   
      
      
                                                  Published in BMC bioinformatics (11.04.2008)
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          Evaluation of Microarray Preprocessing Algorithms Based on Concordance with RT-PCR in Clinical Samples
                                      
                                            Gyorffy, Balazs,                              Molnar, Bela,                              Lage, Hermann,                              Szallasi, Zoltan,                              Eklund, Aron C.                              
Published in PloS one (21.05.2009)
                   
      
      
                                                  Published in PloS one (21.05.2009)
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          MUMmer4: A fast and versatile genome alignment system
                                      
                                            Marçais, Guillaume,                              Delcher, Arthur L.,                              Phillippy, Adam M.,                              Coston, Rachel,                              Salzberg, Steven L.,                              Zimin, Aleksey                              
Published in PLoS computational biology (01.01.2018)
                   
      
      
                                                  Published in PLoS computational biology (01.01.2018)
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          A Decomposition Method for Global Evaluation of Shannon Entropy and Local Estimations of Algorithmic Complexity
                                      
                                            Zenil, Hector,                              Hernández-Orozco, Santiago,                              Kiani, Narsis A.,                              Soler-Toscano, Fernando,                              Rueda-Toicen, Antonio,                              Tegnér, Jesper                              
Published in Entropy (Basel, Switzerland) (01.08.2018)
                   
      
      
                                                  Published in Entropy (Basel, Switzerland) (01.08.2018)
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          BAMQL: a query language for extracting reads from BAM files
                                      
                                            Masella, Andre P.,                              Lalansingh, Christopher M.,                              Sivasundaram, Pragash,                              Fraser, Michael,                              Bristow, Robert G.,                              Boutros, Paul C.                              
Published in BMC bioinformatics (11.08.2016)
                   
      
      
                                                  Published in BMC bioinformatics (11.08.2016)
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          Technology dictates algorithms: recent developments in read alignment
                                      
                                            Alser, Mohammed,                              Rotman, Jeremy,                              Deshpande, Dhrithi,                              Taraszka, Kodi,                              Shi, Huwenbo,                              Baykal, Pelin Icer,                              Yang, Harry Taegyun,                              Xue, Victor,                              Knyazev, Sergey,                              Singer, Benjamin D.,                              Balliu, Brunilda,                              Koslicki, David,                              Skums, Pavel,                              Zelikovsky, Alex,                              Alkan, Can,                              Mutlu, Onur,                              Mangul, Serghei                              
Published in Genome Biology (26.08.2021)
                   
      
      
                                                  Published in Genome Biology (26.08.2021)
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          Parallel comparison of Illumina RNA-Seq and Affymetrix microarray platforms on transcriptomic profiles generated from 5-aza-deoxy-cytidine treated HT-29 colon cancer cells and simulated datasets
                                      
                                            Xu, Xiao,                              Zhang, Yuanhao,                              Williams, Jennie,                              Antoniou, Eric,                              McCombie, W Richard,                              Wu, Song,                              Zhu, Wei,                              Davidson, Nicholas O,                              Denoya, Paula,                              Li, Ellen                              
Published in BMC bioinformatics (28.06.2013)
                   
      
      
                                                  Published in BMC bioinformatics (28.06.2013)
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          Pangenomic genotyping with the marker array
                                      
                                            Mun, Taher,                              Vaddadi, Naga Sai Kavya,                              Langmead, Ben                              
Published in Algorithms for molecular biology (05.05.2023)
                   
      
      
                                                  Published in Algorithms for molecular biology (05.05.2023)
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          Analysis and correction of compositional bias in sparse sequencing count data
                                      
                                            Kumar, M. Senthil,                              Slud, Eric V.,                              Okrah, Kwame,                              Hicks, Stephanie C.,                              Hannenhalli, Sridhar,                              Corrada Bravo, Héctor                              
Published in BMC genomics (06.11.2018)
                   
      
      
                                                  Published in BMC genomics (06.11.2018)
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          Machine learning overcomes human bias in the discovery of self-assembling peptides
                                      
                                            Batra, Rohit,                              Loeffler, Troy D.,                              Chan, Henry,                              Srinivasan, Srilok,                              Cui, Honggang,                              Korendovych, Ivan V.,                              Nanda, Vikas,                              Palmer, Liam C.,                              Solomon, Lee A.,                              Fry, H. Christopher,                              Sankaranarayanan, Subramanian K. R. S.                              
Published in Nature chemistry (01.12.2022)
                   
      
      
                                                  Published in Nature chemistry (01.12.2022)
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          Integration of microarray data and literature mining identifies a sex bias in DPP4+CD4+ T cells in HIV-1 infection
                                      
                                            Stubbe, Hans Christian,                              Dahlke, Christine,                              Rotheneder, Katharina,                              Stirner, Renate,                              Roider, Julia,                              Conca, Raffaele,                              Seybold, Ulrich,                              Bogner, Johannes,                              Addo, Marylyn Martina,                              Draenert, Rika                              
Published in PloS one (18.09.2020)
                   
      
      
                                                  Published in PloS one (18.09.2020)
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          Non-circular signals for nested array: sum–difference co-array and direction of arrival estimation algorithm
                                      
                                            Yunfei, Wang,                              Jinqing, Shen,                              Xiaofei, Zhang,                              Yi, He,                              Xiangrui, Dai                              
Published in IET radar, sonar & navigation (01.01.2020)
                   
      
      
                                                  Published in IET radar, sonar & navigation (01.01.2020)
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          ShoRAH: estimating the genetic diversity of a mixed sample from next-generation sequencing data
                                      
                                            Zagordi, Osvaldo,                              Bhattacharya, Arnab,                              Eriksson, Nicholas,                              Beerenwinkel, Niko                              
Published in BMC bioinformatics (26.04.2011)
                   
      
      
                                                  Published in BMC bioinformatics (26.04.2011)
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