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uShuffle: A useful tool for shuffling biological sequences while preserving the k-let counts
Jiang, Minghui, Anderson, James, Gillespie, Joel, Mayne, Martin
Published in BMC bioinformatics (11.04.2008)
Published in BMC bioinformatics (11.04.2008)
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Journal Article
GRIMM: GRaph IMputation and matching for HLA genotypes
Maiers, Martin, Halagan, Michael, Gragert, Loren, Bashyal, Pradeep, Brelsford, Jason, Schneider, Joel, Lutsker, Polina, Louzoun, Yoram
Published in Bioinformatics (15.09.2019)
Published in Bioinformatics (15.09.2019)
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Journal Article
The Bioperl Toolkit: Perl Modules for the Life Sciences
Stajich, Jason E., Block, David, Boulez, Kris, Brenner, Steven E., Chervitz, Stephen A., Dagdigian, Chris, Fuellen, Georg, Gilbert, James G.R., Korf, Ian, Lapp, Hilmar, Lehväslaiho, Heikki, Matsalla, Chad, Mungall, Chris J., Osborne, Brian I., Pocock, Matthew R., Schattner, Peter, Senger, Martin, Stein, Lincoln D., Stupka, Elia, Wilkinson, Mark D., Birney, Ewan
Published in Genome research (01.10.2002)
Published in Genome research (01.10.2002)
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Journal Article
Description of a pharmacist-driven safety algorithm in Staphylococcus aureus bacteremia: Compliance, interventions, and good saves
Lines, Tara H., Nesbitt, Whitney J., Greene, Matthew H., Nelson, George E.
Published in Infection control and hospital epidemiology (01.08.2020)
Published in Infection control and hospital epidemiology (01.08.2020)
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Journal Article
MUMmer4: A fast and versatile genome alignment system
Marçais, Guillaume, Delcher, Arthur L., Phillippy, Adam M., Coston, Rachel, Salzberg, Steven L., Zimin, Aleksey
Published in PLoS computational biology (01.01.2018)
Published in PLoS computational biology (01.01.2018)
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Journal Article
A cost-saving algorithm for rapid diagnosis of Staphylococcus aureus and susceptibility to oxacillin directly from positive blood culture bottles by combined testing with BinaxNOW® S. aureus and Xpert MRSA/SA assay
Yossepowitch, Orit, Dan, Michael, Kutchinsky, Anuta, Gottesman, Tamar, Schwartz–Harari, Orna
Published in Diagnostic microbiology and infectious disease (01.04.2014)
Published in Diagnostic microbiology and infectious disease (01.04.2014)
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Journal Article
A Decomposition Method for Global Evaluation of Shannon Entropy and Local Estimations of Algorithmic Complexity
Zenil, Hector, Hernández-Orozco, Santiago, Kiani, Narsis A., Soler-Toscano, Fernando, Rueda-Toicen, Antonio, Tegnér, Jesper
Published in Entropy (Basel, Switzerland) (01.08.2018)
Published in Entropy (Basel, Switzerland) (01.08.2018)
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Journal Article
Based Upon Repeat Pattern (BURP): an algorithm to characterize the long-term evolution of Staphylococcus aureus populations based on spa polymorphisms
Mellmann, Alexander, Weniger, Thomas, Berssenbrügge, Christoph, Rothgänger, Jörg, Sammeth, Michael, Stoye, Jens, Harmsen, Dag
Published in BMC microbiology (29.10.2007)
Published in BMC microbiology (29.10.2007)
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Journal Article
A New Algorithm Identifying Association of Staphylococcus aureus Strains with Low Expression of Filaggrin in Atopic Dermatitis
Satish, Latha, Chang, Wan-Chi, Dahal, Arya, Johansson, Elizabeth, makenna eversole, Schuetz, Matthew, Grashel, Brittany, daniel spagna, seth jenkins, veronica velasquez, Herr, Andrew, Biagini, Jocelyn, david haslam, Martin, Lisa, Hershey, Gurjit Khurana
Published in Journal of allergy and clinical immunology (01.02.2023)
Published in Journal of allergy and clinical immunology (01.02.2023)
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Journal Article
Quantifying Health Outcome Disparity in Invasive Methicillin-Resistant Staphylococcus aureus Infection using Fairness Algorithms on Real-World Data
Jun, Inyoung, Ser, Sarah E., Cohen, Scott A., Xu, Jie, Lucero, Robert J., Bian, Jiang, Prosperi, Mattia
Published in PACIFIC SYMPOSIUM ON BIOCOMPUTING 2024 (01.01.2024)
Published in PACIFIC SYMPOSIUM ON BIOCOMPUTING 2024 (01.01.2024)
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Book Chapter
pyFIT3D and pyPipe3D -- The new version of the Integral Field Spectroscopy data analysis pipeline
Lacerda, Eduardo A D, Sánchez, S F, Mejía-Narváez, A, Camps-Fariña, A, Espinosa-Ponce, C, Barrera-Ballesteros, J K, Ibarra-Medel, H, Lugo-Aranda, A Z
Published in arXiv.org (26.07.2022)
Published in arXiv.org (26.07.2022)
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Paper
Journal Article
BAMQL: a query language for extracting reads from BAM files
Masella, Andre P., Lalansingh, Christopher M., Sivasundaram, Pragash, Fraser, Michael, Bristow, Robert G., Boutros, Paul C.
Published in BMC bioinformatics (11.08.2016)
Published in BMC bioinformatics (11.08.2016)
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Journal Article