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MUMmer4: A fast and versatile genome alignment system
Marçais, Guillaume, Delcher, Arthur L., Phillippy, Adam M., Coston, Rachel, Salzberg, Steven L., Zimin, Aleksey
Published in PLoS computational biology (01.01.2018)
Published in PLoS computational biology (01.01.2018)
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Journal Article
A Decomposition Method for Global Evaluation of Shannon Entropy and Local Estimations of Algorithmic Complexity
Zenil, Hector, Hernández-Orozco, Santiago, Kiani, Narsis A., Soler-Toscano, Fernando, Rueda-Toicen, Antonio, Tegnér, Jesper
Published in Entropy (Basel, Switzerland) (01.08.2018)
Published in Entropy (Basel, Switzerland) (01.08.2018)
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Journal Article
Gas‐kinetic unified algorithm for plane external force‐driven flows covering all flow regimes by modeling of Boltzmann equation
Li, Zhi‐Hui, Hu, Wen‐Qiang, Peng, Ao‐Ping, Wu, Jun‐Lin, Lee, Chun‐Hian
Published in International journal for numerical methods in fluids (01.08.2020)
Published in International journal for numerical methods in fluids (01.08.2020)
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Journal Article
uShuffle: A useful tool for shuffling biological sequences while preserving the k-let counts
Jiang, Minghui, Anderson, James, Gillespie, Joel, Mayne, Martin
Published in BMC bioinformatics (11.04.2008)
Published in BMC bioinformatics (11.04.2008)
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Journal Article
ShoRAH: estimating the genetic diversity of a mixed sample from next-generation sequencing data
Zagordi, Osvaldo, Bhattacharya, Arnab, Eriksson, Nicholas, Beerenwinkel, Niko
Published in BMC bioinformatics (26.04.2011)
Published in BMC bioinformatics (26.04.2011)
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Journal Article
GRIMM: GRaph IMputation and matching for HLA genotypes
Maiers, Martin, Halagan, Michael, Gragert, Loren, Bashyal, Pradeep, Brelsford, Jason, Schneider, Joel, Lutsker, Polina, Louzoun, Yoram
Published in Bioinformatics (15.09.2019)
Published in Bioinformatics (15.09.2019)
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Journal Article
FreeContact: fast and free software for protein contact prediction from residue co-evolution
Kaján, László, Hopf, Thomas A, Kalaš, Matúš, Marks, Debora S, Rost, Burkhard
Published in BMC bioinformatics (26.03.2014)
Published in BMC bioinformatics (26.03.2014)
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Journal Article
The Bioperl Toolkit: Perl Modules for the Life Sciences
Stajich, Jason E., Block, David, Boulez, Kris, Brenner, Steven E., Chervitz, Stephen A., Dagdigian, Chris, Fuellen, Georg, Gilbert, James G.R., Korf, Ian, Lapp, Hilmar, Lehväslaiho, Heikki, Matsalla, Chad, Mungall, Chris J., Osborne, Brian I., Pocock, Matthew R., Schattner, Peter, Senger, Martin, Stein, Lincoln D., Stupka, Elia, Wilkinson, Mark D., Birney, Ewan
Published in Genome research (01.10.2002)
Published in Genome research (01.10.2002)
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Journal Article
Accessing the SEED Genome Databases via Web Services API: Tools for Programmers
Disz, Terry, Akhter, Sajia, Cuevas, Daniel, Olson, Robert, Overbeek, Ross, Vonstein, Veronika, Stevens, Rick, Edwards, Robert A
Published in BMC bioinformatics (14.06.2010)
Published in BMC bioinformatics (14.06.2010)
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Journal Article
gmxapi: A GROMACS-native Python interface for molecular dynamics with ensemble and plugin support
Irrgang, M. Eric, Davis, Caroline, Kasson, Peter M.
Published in PLoS computational biology (01.02.2022)
Published in PLoS computational biology (01.02.2022)
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Journal Article
Inverse design in subsonic and transonic external flow regimes using Elastic Surface Algorithm
Safari, M., Nili-Ahmadabadi, M., Ghaei, A., Shirani, E.
Published in Computers & fluids (10.10.2014)
Published in Computers & fluids (10.10.2014)
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Journal Article