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MUMmer4: A fast and versatile genome alignment system
Marçais, Guillaume, Delcher, Arthur L., Phillippy, Adam M., Coston, Rachel, Salzberg, Steven L., Zimin, Aleksey
Published in PLoS computational biology (01.01.2018)
Published in PLoS computational biology (01.01.2018)
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Journal Article
A Decomposition Method for Global Evaluation of Shannon Entropy and Local Estimations of Algorithmic Complexity
Zenil, Hector, Hernández-Orozco, Santiago, Kiani, Narsis A., Soler-Toscano, Fernando, Rueda-Toicen, Antonio, Tegnér, Jesper
Published in Entropy (Basel, Switzerland) (01.08.2018)
Published in Entropy (Basel, Switzerland) (01.08.2018)
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Journal Article
uShuffle: A useful tool for shuffling biological sequences while preserving the k-let counts
Jiang, Minghui, Anderson, James, Gillespie, Joel, Mayne, Martin
Published in BMC bioinformatics (11.04.2008)
Published in BMC bioinformatics (11.04.2008)
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Journal Article
GRIMM: GRaph IMputation and matching for HLA genotypes
Maiers, Martin, Halagan, Michael, Gragert, Loren, Bashyal, Pradeep, Brelsford, Jason, Schneider, Joel, Lutsker, Polina, Louzoun, Yoram
Published in Bioinformatics (15.09.2019)
Published in Bioinformatics (15.09.2019)
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Journal Article
FreeContact: fast and free software for protein contact prediction from residue co-evolution
Kaján, László, Hopf, Thomas A, Kalaš, Matúš, Marks, Debora S, Rost, Burkhard
Published in BMC bioinformatics (26.03.2014)
Published in BMC bioinformatics (26.03.2014)
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Journal Article
The Bioperl Toolkit: Perl Modules for the Life Sciences
Stajich, Jason E., Block, David, Boulez, Kris, Brenner, Steven E., Chervitz, Stephen A., Dagdigian, Chris, Fuellen, Georg, Gilbert, James G.R., Korf, Ian, Lapp, Hilmar, Lehväslaiho, Heikki, Matsalla, Chad, Mungall, Chris J., Osborne, Brian I., Pocock, Matthew R., Schattner, Peter, Senger, Martin, Stein, Lincoln D., Stupka, Elia, Wilkinson, Mark D., Birney, Ewan
Published in Genome research (01.10.2002)
Published in Genome research (01.10.2002)
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Journal Article
Accessing the SEED Genome Databases via Web Services API: Tools for Programmers
Disz, Terry, Akhter, Sajia, Cuevas, Daniel, Olson, Robert, Overbeek, Ross, Vonstein, Veronika, Stevens, Rick, Edwards, Robert A
Published in BMC bioinformatics (14.06.2010)
Published in BMC bioinformatics (14.06.2010)
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Journal Article
pyFIT3D and pyPipe3D -- The new version of the Integral Field Spectroscopy data analysis pipeline
Lacerda, Eduardo A D, Sánchez, S F, Mejía-Narváez, A, Camps-Fariña, A, Espinosa-Ponce, C, Barrera-Ballesteros, J K, Ibarra-Medel, H, Lugo-Aranda, A Z
Published in arXiv.org (26.07.2022)
Published in arXiv.org (26.07.2022)
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Paper
Journal Article
Palladium-based mass tag cell barcoding with a doublet-filtering scheme and single-cell deconvolution algorithm
Zunder, Eli R, Finck, Rachel, Behbehani, Gregory K, Amir, El-ad D, Krishnaswamy, Smita, Gonzalez, Veronica D, Lorang, Cynthia G, Bjornson, Zach, Spitzer, Matthew H, Bodenmiller, Bernd, Fantl, Wendy J, Pe'er, Dana, Nolan, Garry P
Published in Nature protocols (01.02.2015)
Published in Nature protocols (01.02.2015)
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Journal Article
BAMQL: a query language for extracting reads from BAM files
Masella, Andre P., Lalansingh, Christopher M., Sivasundaram, Pragash, Fraser, Michael, Bristow, Robert G., Boutros, Paul C.
Published in BMC bioinformatics (11.08.2016)
Published in BMC bioinformatics (11.08.2016)
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Journal Article
Comprehensive assessment of array-based platforms and calling algorithms for detection of copy number variants
Pinto, Dalila, Darvishi, Katayoon, Shi, Xinghua, Rajan, Diana, Rigler, Diane, Fitzgerald, Tom, Lionel, Anath C, Thiruvahindrapuram, Bhooma, MacDonald, Jeffrey R, Mills, Ryan, Prasad, Aparna, Noonan, Kristin, Gribble, Susan, Prigmore, Elena, Donahoe, Patricia K, Smith, Richard S, Park, Ji Hyeon, Hurles, Matthew E, Carter, Nigel P, Lee, Charles, Scherer, Stephen W, Feuk, Lars
Published in Nature biotechnology (01.06.2011)
Published in Nature biotechnology (01.06.2011)
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Journal Article
Design of Sparse Halbach Magnet Arrays for Portable MRI Using a Genetic Algorithm
Cooley, Clarissa Zimmerman, Haskell, Melissa W., Cauley, Stephen F., Sappo, Charlotte, Lapierre, Cristen D., Ha, Christopher G., Stockmann, Jason P., Wald, Lawrence L.
Published in IEEE transactions on magnetics (01.01.2018)
Published in IEEE transactions on magnetics (01.01.2018)
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Journal Article