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    uShuffle: A useful tool for shuffling biological sequences while preserving the k-let counts
                                      
                                            Jiang, Minghui,                              Anderson, James,                              Gillespie, Joel,                              Mayne, Martin                              
Published in BMC bioinformatics (11.04.2008)
                   
      
      
                                                  Published in BMC bioinformatics (11.04.2008)
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          BAMQL: a query language for extracting reads from BAM files
                                      
                                            Masella, Andre P.,                              Lalansingh, Christopher M.,                              Sivasundaram, Pragash,                              Fraser, Michael,                              Bristow, Robert G.,                              Boutros, Paul C.                              
Published in BMC bioinformatics (11.08.2016)
                   
      
      
                                                  Published in BMC bioinformatics (11.08.2016)
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          GRIMM: GRaph IMputation and matching for HLA genotypes
                                      
                                            Maiers, Martin,                              Halagan, Michael,                              Gragert, Loren,                              Bashyal, Pradeep,                              Brelsford, Jason,                              Schneider, Joel,                              Lutsker, Polina,                              Louzoun, Yoram                              
Published in Bioinformatics (15.09.2019)
                   
      
      
                                                  Published in Bioinformatics (15.09.2019)
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          LibSBML: an API Library for SBML
                                      
                                            Bornstein, Benjamin J.,                              Keating, Sarah M.,                              Jouraku, Akiya,                              Hucka, Michael                              
Published in Bioinformatics (15.03.2008)
                   
      
      
                                                  Published in Bioinformatics (15.03.2008)
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          ShoRAH: estimating the genetic diversity of a mixed sample from next-generation sequencing data
                                      
                                            Zagordi, Osvaldo,                              Bhattacharya, Arnab,                              Eriksson, Nicholas,                              Beerenwinkel, Niko                              
Published in BMC bioinformatics (26.04.2011)
                   
      
      
                                                  Published in BMC bioinformatics (26.04.2011)
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          pyFIT3D and pyPipe3D — The new version of the integral field spectroscopy data analysis pipeline
                                      
                                            Lacerda, Eduardo A.D.,                              Sánchez, S.F.,                              Mejía-Narváez, A.,                              Camps-Fariña, A.,                              Espinosa-Ponce, C.,                              Barrera-Ballesteros, J.K.,                              Ibarra-Medel, H.,                              Lugo-Aranda, A.Z.                              
Published in New astronomy (01.11.2022)
                   
      
      
                                                  Published in New astronomy (01.11.2022)
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          The Bioperl Toolkit: Perl Modules for the Life Sciences
                                      
                                            Stajich, Jason E.,                              Block, David,                              Boulez, Kris,                              Brenner, Steven E.,                              Chervitz, Stephen A.,                              Dagdigian, Chris,                              Fuellen, Georg,                              Gilbert, James G.R.,                              Korf, Ian,                              Lapp, Hilmar,                              Lehväslaiho, Heikki,                              Matsalla, Chad,                              Mungall, Chris J.,                              Osborne, Brian I.,                              Pocock, Matthew R.,                              Schattner, Peter,                              Senger, Martin,                              Stein, Lincoln D.,                              Stupka, Elia,                              Wilkinson, Mark D.,                              Birney, Ewan                              
Published in Genome research (01.10.2002)
                   
      
      
                                                  Published in Genome research (01.10.2002)
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          SciPy 1.0: fundamental algorithms for scientific computing in Python
                                      
                                            Virtanen, Pauli,                              Gommers, Ralf,                              Oliphant, Travis E.,                              Haberland, Matt,                              Reddy, Tyler,                              Cournapeau, David,                              Burovski, Evgeni,                              Peterson, Pearu,                              Weckesser, Warren,                              Bright, Jonathan,                              van der Walt, Stéfan J.,                              Brett, Matthew,                              Wilson, Joshua,                              Millman, K. Jarrod,                              Mayorov, Nikolay,                              Nelson, Andrew R. J.,                              Jones, Eric,                              Kern, Robert,                              Larson, Eric,                              Carey, C J,                              Polat, İlhan,                              Feng, Yu,                              Moore, Eric W.,                              VanderPlas, Jake,                              Laxalde, Denis,                              Perktold, Josef,                              Cimrman, Robert,                              Henriksen, Ian,                              Quintero, E. A.,                              Harris, Charles R.,                              Archibald, Anne M.,                              Ribeiro, Antônio H.,                              Pedregosa, Fabian,                              van Mulbregt, Paul                              
Published in Nature methods (01.03.2020)
                   
      
      
                                                  Published in Nature methods (01.03.2020)
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          pyFIT3D and pyPipe3D -- The new version of the Integral Field Spectroscopy data analysis pipeline
                                      
                                            Lacerda, Eduardo A D,                              Sánchez, S F,                              Mejía-Narváez, A,                              Camps-Fariña, A,                              Espinosa-Ponce, C,                              Barrera-Ballesteros, J K,                              Ibarra-Medel, H,                              Lugo-Aranda, A Z                              
Published in arXiv.org (26.07.2022)
                   
      
      
                                                  Published in arXiv.org (26.07.2022)
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          Portable BLAST-like algorithm library and its implementations for command line, Python, and R
                                      
                                            Schmid, Steven,                              Jeevannavar, Aditya,                              Julian, Timothy R.,                              Tamminen, Manu                              
Published in PloS one (30.11.2023)
                   
      
      
                                                  Published in PloS one (30.11.2023)
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