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Inferring cellular and molecular processes in single-cell data with non-negative matrix factorization using Python, R and GenePattern Notebook implementations of CoGAPS
Johnson, Jeanette A. I., Tsang, Ashley P., Mitchell, Jacob T., Zhou, David L., Bowden, Julia, Davis-Marcisak, Emily, Sherman, Thomas, Liefeld, Ted, Loth, Melanie, Goff, Loyal A., Zimmerman, Jacquelyn W., Kinny-Köster, Ben, Jaffee, Elizabeth M., Tamayo, Pablo, Mesirov, Jill P., Reich, Michael, Fertig, Elana J., Stein-O’Brien, Genevieve L.
Published in Nature protocols (01.12.2023)
Published in Nature protocols (01.12.2023)
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Journal Article
Automated Processing of Chromatograms: A comprehensive Python Package with GUI for Intelligent Peak Identification and Deconvolution in Chemical Reaction Analysis
Hillenbrand, Julius, Oboril, Jan, Haas, Christian P., Lübbesmeyer, Maximilian, Nicholls, Rachel, Gressling, Thorsten, Jensen, Klavs F., Volpin, Giulio
Published in ChemRxiv (02.07.2024)
Published in ChemRxiv (02.07.2024)
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Paper
MetPy: A Meteorological Python Library for Data Analysis and Visualization
May, Ryan M., Goebbert, Kevin H., Thielen, Jonathan E., Leeman, John R., Camron, M. Drew, Bruick, Zachary, Bruning, Eric C., Manser, Russell P., Arms, Sean C., Marsh, Patrick T.
Published in Bulletin of the American Meteorological Society (01.10.2022)
Published in Bulletin of the American Meteorological Society (01.10.2022)
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Journal Article
Non-circular signals for nested array: sum–difference co-array and direction of arrival estimation algorithm
Yunfei, Wang, Jinqing, Shen, Xiaofei, Zhang, Yi, He, Xiangrui, Dai
Published in IET radar, sonar & navigation (01.01.2020)
Published in IET radar, sonar & navigation (01.01.2020)
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Journal Article
BAMQL: a query language for extracting reads from BAM files
Masella, Andre P., Lalansingh, Christopher M., Sivasundaram, Pragash, Fraser, Michael, Bristow, Robert G., Boutros, Paul C.
Published in BMC bioinformatics (11.08.2016)
Published in BMC bioinformatics (11.08.2016)
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Journal Article
MR. Estimator, a toolbox to determine intrinsic timescales from subsampled spiking activity
Spitzner, F. P., Dehning, J., Wilting, J., Hagemann, A., P. Neto, J., Zierenberg, J., Priesemann, V.
Published in PloS one (29.04.2021)
Published in PloS one (29.04.2021)
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Journal Article
PyBoolNet: a python package for the generation, analysis and visualization of boolean networks
Klarner, Hannes, Streck, Adam, Siebert, Heike
Published in Bioinformatics (Oxford, England) (01.03.2017)
Published in Bioinformatics (Oxford, England) (01.03.2017)
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Journal Article
OPARC: Optimal and Precise Array Response Control Algorithm-Part I: Fundamentals
Zhang, Xuejing, He, Zishu, Xia, Xiang-Gen, Liao, Bin, Zhang, Xuepan, Yang, Yue
Published in IEEE transactions on signal processing (01.02.2019)
Published in IEEE transactions on signal processing (01.02.2019)
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Journal Article
AlabOS: A Python-based Reconfigurable Workflow Management Framework for Autonomous Laboratories
Fei, Yuxing, Rendy, Bernardus, Kumar, Rishi, Dartsi, Olympia, Sahasrabuddhe, Hrushikesh P, McDermott, Matthew J, Wang, Zheren, Szymanski, Nathan J, Walters, Lauren N, Milsted, David, Zeng, Yan, Jain, Anubhav, Ceder, Gerbrand
Published in arXiv.org (22.05.2024)
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Published in arXiv.org (22.05.2024)
Paper
Improved DOA estimation algorithm for co-prime linear arrays using root-MUSIC algorithm
Zhang, Dong, Zhang, Yongshun, Zheng, Guimei, Feng, Cunqian, Tang, Jun
Published in Electronics letters (31.08.2017)
Published in Electronics letters (31.08.2017)
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Journal Article