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    Comparative Analysis of AI Models for Python Code Generation: A HumanEval Benchmark Study
                                      
                                            Bayram, Ali,                              Menekse Dalveren, Gonca Gokce,                              Derawi, Mohammad                              
Published in Applied sciences (10.09.2025)
                   
      
      
                                                  Published in Applied sciences (10.09.2025)
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              Journal Article
          
              
          PDAL: An open source library for the processing and analysis of point clouds
                                      
                                            Butler, Howard,                              Chambers, Bradley,                              Hartzell, Preston,                              Glennie, Craig                              
Published in Computers & geosciences (01.03.2021)
                   
      
      
                                                  Published in Computers & geosciences (01.03.2021)
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          MetPy: A Meteorological Python Library for Data Analysis and Visualization
                                      
                                            May, Ryan M.,                              Goebbert, Kevin H.,                              Thielen, Jonathan E.,                              Leeman, John R.,                              Camron, M. Drew,                              Bruick, Zachary,                              Bruning, Eric C.,                              Manser, Russell P.,                              Arms, Sean C.,                              Marsh, Patrick T.                              
Published in Bulletin of the American Meteorological Society (01.10.2022)
                   
      
      
                                                  Published in Bulletin of the American Meteorological Society (01.10.2022)
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          gmxapi: A GROMACS-native Python interface for molecular dynamics with ensemble and plugin support
                                      
                                            Irrgang, M. Eric,                              Davis, Caroline,                              Kasson, Peter M.                              
Published in PLoS computational biology (01.02.2022)
                   
      
      
                                                  Published in PLoS computational biology (01.02.2022)
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          Bioinformatic pipelines in Python with Leaf
                                      
                                            Napolitano, Francesco,                              Mariani-Costantini, Renato,                              Tagliaferri, Roberto                              
Published in BMC bioinformatics (21.06.2013)
                   
      
      
                                                  Published in BMC bioinformatics (21.06.2013)
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          Inferring cellular and molecular processes in single-cell data with non-negative matrix factorization using Python, R and GenePattern Notebook implementations of CoGAPS
                                      
                                            Johnson, Jeanette A. I.,                              Tsang, Ashley P.,                              Mitchell, Jacob T.,                              Zhou, David L.,                              Bowden, Julia,                              Davis-Marcisak, Emily,                              Sherman, Thomas,                              Liefeld, Ted,                              Loth, Melanie,                              Goff, Loyal A.,                              Zimmerman, Jacquelyn W.,                              Kinny-Köster, Ben,                              Jaffee, Elizabeth M.,                              Tamayo, Pablo,                              Mesirov, Jill P.,                              Reich, Michael,                              Fertig, Elana J.,                              Stein-O’Brien, Genevieve L.                              
Published in Nature protocols (01.12.2023)
                   
      
      
                                                  Published in Nature protocols (01.12.2023)
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          Scalable Parallel Nonlinear Optimization with PyNumero and Parapint
                                      
                                            Rodriguez, Jose S.,                              Parker, Robert B.,                              Laird, Carl D.,                              Nicholson, Bethany L.,                              Siirola, John D.,                              Bynum, Michael L.                              
Published in INFORMS journal on computing (01.03.2023)
                   
      
      
                                                  Published in INFORMS journal on computing (01.03.2023)
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          Probabilistic programming in Python using PyMC3
                                      
                                            Salvatier, John,                              Wiecki, Thomas V.,                              Fonnesbeck, Christopher                              
Published in PeerJ. Computer science (06.04.2016)
                   
      
      
                                                  Published in PeerJ. Computer science (06.04.2016)
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          APIScanner - Towards Automated Detection of Deprecated APIs in Python Libraries
                                      
                                            Vadlamani, Aparna,                              Kalicheti, Rishitha,                              Chimalakonda, Sridhar                              
Published in 2021 IEEE/ACM 43rd International Conference on Software Engineering: Companion Proceedings (ICSE-Companion) (01.05.2021)
                   
      
      
                                                  Published in 2021 IEEE/ACM 43rd International Conference on Software Engineering: Companion Proceedings (ICSE-Companion) (01.05.2021)
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              Conference Proceeding
          
              
          Problem-Solving with Python: Modeling of Lanthanide-Shift Reagent Complexes
                                      
                                            Zlatković, Dragan,                              Đorđević Zlatković, Miljana,                              Radulović, Niko                              
Published in Journal of chemical education (12.09.2023)
                   
      
      
                                                  Published in Journal of chemical education (12.09.2023)
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          SciPy 1.0: fundamental algorithms for scientific computing in Python
                                      
                                            Virtanen, Pauli,                              Gommers, Ralf,                              Oliphant, Travis E.,                              Haberland, Matt,                              Reddy, Tyler,                              Cournapeau, David,                              Burovski, Evgeni,                              Peterson, Pearu,                              Weckesser, Warren,                              Bright, Jonathan,                              van der Walt, Stéfan J.,                              Brett, Matthew,                              Wilson, Joshua,                              Millman, K. Jarrod,                              Mayorov, Nikolay,                              Nelson, Andrew R. J.,                              Jones, Eric,                              Kern, Robert,                              Larson, Eric,                              Carey, C J,                              Polat, İlhan,                              Feng, Yu,                              Moore, Eric W.,                              VanderPlas, Jake,                              Laxalde, Denis,                              Perktold, Josef,                              Cimrman, Robert,                              Henriksen, Ian,                              Quintero, E. A.,                              Harris, Charles R.,                              Archibald, Anne M.,                              Ribeiro, Antônio H.,                              Pedregosa, Fabian,                              van Mulbregt, Paul                              
Published in Nature methods (01.03.2020)
                   
      
      
                                                  Published in Nature methods (01.03.2020)
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          A finite element based homogenization code in python: HomPy
                                      
                                            Ozdilek, Emin Emre,                              Ozcakar, Egecan,                              Muhtaroglu, Nitel,                              Simsek, Ugur,                              Gulcan, Orhan,                              Sendur, Gullu Kiziltas                              
Published in Advances in engineering software (1992) (01.08.2024)
                   
      
      
                                                  Published in Advances in engineering software (1992) (01.08.2024)
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          Implementation of Biorhythm Graph with Trigonometric Functions using Python
                                      
                                            Bee, Kang Gyu,                              Ye Won, Jeon                              
Published in MATTER International Journal of Science and Technology (15.07.2023)
                   
      
      
                                                  Published in MATTER International Journal of Science and Technology (15.07.2023)
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          IMPLEMENTATION OF BIORHYTHM GRAPH WITH TRIGONOMETRIC FUNCTIONS USING PYTHON
                                      
                                            Bee, Kang Gyu,                              Won, Jeon Ye                              
Published in MATTER International Journal of Science and Technology (15.07.2023)
                   
      
      
                                                  Published in MATTER International Journal of Science and Technology (15.07.2023)
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              Journal Article