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Inferring cellular and molecular processes in single-cell data with non-negative matrix factorization using Python, R and GenePattern Notebook implementations of CoGAPS

by Johnson, Jeanette A. I., Tsang, Ashley P., Mitchell, Jacob T., Zhou, David L., Bowden, Julia, Davis-Marcisak, Emily, Sherman, Thomas, Liefeld, Ted, Loth, Melanie, Goff, Loyal A., Zimmerman, Jacquelyn W., Kinny-Köster, Ben, Jaffee, Elizabeth M., Tamayo, Pablo, Mesirov, Jill P., Reich, Michael, Fertig, Elana J., Stein-O’Brien, Genevieve L.
Published in Nature protocols (01.12.2023)

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Machine Learning Guide for Oil and Gas Using Python - A Step-by-Step Breakdown with Data, Algorithms, Codes, and Applications

by Belyadi, Hoss, Haghighat, Alireza
Year of Publication 2021

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Python-Based Visual Classification Algorithm for Economic Text Big Data

by Jiang, Yihuo, Guo, Xiaomei, Ni, Hongliang, Jiang, Wenbing
Published in Discrete dynamics in nature and society (2022)

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Journal Article

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Automatic Evaluation of Soybean Seed Traits Using RGB Image Data and a Python Algorithm

by Ghimire, Amit, Kim, Seong-Hoon, Cho, Areum, Jang, Naeun, Ahn, Seonhwa, Islam, Mohammad Shafiqul, Mansoor, Sheikh, Chung, Yong Suk, Kim, Yoonha
Published in Plants (Basel) (28.08.2023)

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gmxapi: A GROMACS-native Python interface for molecular dynamics with ensemble and plugin support

by Irrgang, M. Eric, Davis, Caroline, Kasson, Peter M.
Published in PLoS computational biology (01.02.2022)

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Data Science Toolkit: An all-in-one python library to help researchers and practitioners in implementing data science-related algorithms with less effort

by El Hachimi, Chouaib, Belaqziz, Salwa, Khabba, Saïd, Chehbouni, Abdelghani
Published in Software impacts (01.05.2022)

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Parallel distributed computing using Python

by Dalcin, Lisandro D., Paz, Rodrigo R., Kler, Pablo A., Cosimo, Alejandro
Published in Advances in water resources (01.09.2011)

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MetPy: A Meteorological Python Library for Data Analysis and Visualization

by May, Ryan M., Goebbert, Kevin H., Thielen, Jonathan E., Leeman, John R., Camron, M. Drew, Bruick, Zachary, Bruning, Eric C., Manser, Russell P., Arms, Sean C., Marsh, Patrick T.
Published in Bulletin of the American Meteorological Society (01.10.2022)

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PyNoetic: A modular python framework for no-code development of EEG brain-computer interfaces

by Singh, Gursimran, Chharia, Aviral, Upadhyay, Rahul, Kumar, Vinay, Longo, Luca
Published in PloS one (06.08.2025)

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Feature Selection Algorithms as One of the Python Data Analytical Tools

by Pilnenskiy, Nikita, Smetannikov, Ivan
Published in Future internet (01.03.2020)

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pyOpenMS: A Python-based interface to the OpenMS mass-spectrometry algorithm library

by Röst, Hannes L., Schmitt, Uwe, Aebersold, Ruedi, Malmström, Lars
Published in Proteomics (Weinheim) (01.01.2014)

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Classification Performance Evaluation from Multilevel Logistic and Support Vector Machine Algorithms through Simulated Data in Python

by Fávero, Luiz Paulo, Belfiore, Patrícia, Santos, Helder Prado, dos Santos, Marcos, de Araújo Costa, Igor Pinheiro, Junior, Wilson Tarantin
Published in Procedia computer science (2022)

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Implementation of Run Length Encoding (RLE) Algorithm on Text Data Compress using Python

by Siradjuddin, Hairil Kurniadi, Khairan, Amal, Albaar, Muhammad Ridha, Abdullah, Saiful Do
Published in Sistemasi : jurnal sistem informasi (Online) (29.07.2024)

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PyMix - The Python mixture package - a tool for clustering of heterogeneous biological data

by Georgi, Benjamin, Costa, Ivan Gesteira, Schliep, Alexander
Published in BMC bioinformatics (06.01.2010)

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Portable BLAST-like algorithm library and its implementations for command line, Python, and R

by Schmid, Steven, Jeevannavar, Aditya, Julian, Timothy R., Tamminen, Manu
Published in PloS one (30.11.2023)

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pyKVFinder: an efficient and integrable Python package for biomolecular cavity detection and characterization in data science

by Guerra, João Victor da Silva, Ribeiro-Filho, Helder Veras, Jara, Gabriel Ernesto, Bortot, Leandro Oliveira, Pereira, José Geraldo de Carvalho, Lopes-de-Oliveira, Paulo Sérgio
Published in BMC bioinformatics (20.12.2021)

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Integration of Python Crawler and URL De-duplication Algorithm for Metrological Data Analysis

Published in Tehnički vjesnik (01.04.2025)

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MEG and EEG data analysis with MNE-Python

by Gramfort, Alexandre
Published in Frontiers in neuroscience (26.12.2013)

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Python: An Ecosystem for Scientific Computing

by Perez, Fernando, Granger, Brian E., Hunter, John D.
Published in Computing in science & engineering (01.03.2011)

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Python for MATLAB Development - Extend MATLAB with 300,000+ Modules from the Python Package Index

by Danial, Albert
Year of Publication 2022

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