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Inferring cellular and molecular processes in single-cell data with non-negative matrix factorization using Python, R and GenePattern Notebook implementations of CoGAPS
Johnson, Jeanette A. I., Tsang, Ashley P., Mitchell, Jacob T., Zhou, David L., Bowden, Julia, Davis-Marcisak, Emily, Sherman, Thomas, Liefeld, Ted, Loth, Melanie, Goff, Loyal A., Zimmerman, Jacquelyn W., Kinny-Köster, Ben, Jaffee, Elizabeth M., Tamayo, Pablo, Mesirov, Jill P., Reich, Michael, Fertig, Elana J., Stein-O’Brien, Genevieve L.
Published in Nature protocols (01.12.2023)
Published in Nature protocols (01.12.2023)
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Journal Article
PyMix - The Python mixture package - a tool for clustering of heterogeneous biological data
Georgi, Benjamin, Costa, Ivan Gesteira, Schliep, Alexander
Published in BMC bioinformatics (06.01.2010)
Published in BMC bioinformatics (06.01.2010)
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Journal Article
Python-Based Visual Classification Algorithm for Economic Text Big Data
Jiang, Yihuo, Guo, Xiaomei, Ni, Hongliang, Jiang, Wenbing
Published in Discrete dynamics in nature and society (2022)
Published in Discrete dynamics in nature and society (2022)
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Journal Article
Automatic Evaluation of Soybean Seed Traits Using RGB Image Data and a Python Algorithm
Ghimire, Amit, Kim, Seong-Hoon, Cho, Areum, Jang, Naeun, Ahn, Seonhwa, Islam, Mohammad Shafiqul, Mansoor, Sheikh, Chung, Yong Suk, Kim, Yoonha
Published in Plants (Basel) (28.08.2023)
Published in Plants (Basel) (28.08.2023)
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Journal Article
Data Science Toolkit: An all-in-one python library to help researchers and practitioners in implementing data science-related algorithms with less effort
El Hachimi, Chouaib, Belaqziz, Salwa, Khabba, Saïd, Chehbouni, Abdelghani
Published in Software impacts (01.05.2022)
Published in Software impacts (01.05.2022)
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Journal Article
Parallel distributed computing using Python
Dalcin, Lisandro D., Paz, Rodrigo R., Kler, Pablo A., Cosimo, Alejandro
Published in Advances in water resources (01.09.2011)
Published in Advances in water resources (01.09.2011)
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Journal Article
PyNoetic: A modular python framework for no-code development of EEG brain-computer interfaces
Singh, Gursimran, Chharia, Aviral, Upadhyay, Rahul, Kumar, Vinay, Longo, Luca
Published in PloS one (06.08.2025)
Published in PloS one (06.08.2025)
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Journal Article
pyOpenMS: A Python-based interface to the OpenMS mass-spectrometry algorithm library
Röst, Hannes L., Schmitt, Uwe, Aebersold, Ruedi, Malmström, Lars
Published in Proteomics (Weinheim) (01.01.2014)
Published in Proteomics (Weinheim) (01.01.2014)
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Journal Article
Classification Performance Evaluation from Multilevel Logistic and Support Vector Machine Algorithms through Simulated Data in Python
Fávero, Luiz Paulo, Belfiore, Patrícia, Santos, Helder Prado, dos Santos, Marcos, de Araújo Costa, Igor Pinheiro, Junior, Wilson Tarantin
Published in Procedia computer science (2022)
Published in Procedia computer science (2022)
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Journal Article
GPU-accelerated real-time reconstruction in Python of three-dimensional datasets from structured illumination microscopy with hexagonal patterns
Gong, Hai, Guo, Wenjun, Neil, Mark A. A.
Published in Philosophical transactions of the Royal Society of London. Series A: Mathematical, physical, and engineering sciences (14.06.2021)
Published in Philosophical transactions of the Royal Society of London. Series A: Mathematical, physical, and engineering sciences (14.06.2021)
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Journal Article