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MetPy: A Meteorological Python Library for Data Analysis and Visualization
May, Ryan M., Goebbert, Kevin H., Thielen, Jonathan E., Leeman, John R., Camron, M. Drew, Bruick, Zachary, Bruning, Eric C., Manser, Russell P., Arms, Sean C., Marsh, Patrick T.
Published in Bulletin of the American Meteorological Society (01.10.2022)
Published in Bulletin of the American Meteorological Society (01.10.2022)
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Journal Article
Core Imaging Library - Part I: a versatile Python framework for tomographic imaging
Jørgensen, J. S., Ametova, E., Burca, G., Fardell, G., Papoutsellis, E., Pasca, E., Thielemans, K., Turner, M., Warr, R., Lionheart, W. R. B., Withers, P. J.
Published in Philosophical transactions of the Royal Society of London. Series A: Mathematical, physical, and engineering sciences (23.08.2021)
Published in Philosophical transactions of the Royal Society of London. Series A: Mathematical, physical, and engineering sciences (23.08.2021)
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Journal Article
Introducing GPU Acceleration into the Python-Based Simulations of Chemistry Framework
Li, Rui, Sun, Qiming, Zhang, Xing, Chan, Garnet Kin-Lic
Published in The journal of physical chemistry. A, Molecules, spectroscopy, kinetics, environment, & general theory (06.02.2025)
Published in The journal of physical chemistry. A, Molecules, spectroscopy, kinetics, environment, & general theory (06.02.2025)
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Journal Article
ITEP: An integrated toolkit for exploration of microbial pan-genomes
Benedict, Matthew N, Henriksen, James R, Metcalf, William W, Whitaker, Rachel J, Price, Nathan D
Published in BMC genomics (03.01.2014)
Published in BMC genomics (03.01.2014)
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Journal Article
LASSIM—A network inference toolbox for genome-wide mechanistic modeling
Magnusson, Rasmus, Mariotti, Guido Pio, Köpsén, Mattias, Lövfors, William, Gawel, Danuta R., Jörnsten, Rebecka, Linde, Jörg, Nordling, Torbjörn E. M., Nyman, Elin, Schulze, Sylvie, Nestor, Colm E., Zhang, Huan, Cedersund, Gunnar, Benson, Mikael, Tjärnberg, Andreas, Gustafsson, Mika
Published in PLoS computational biology (01.06.2017)
Published in PLoS computational biology (01.06.2017)
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Journal Article
Shennong: A Python toolbox for audio speech features extraction
Bernard, Mathieu, Poli, Maxime, Karadayi, Julien, Dupoux, Emmanuel
Published in Behavior research methods (01.12.2023)
Published in Behavior research methods (01.12.2023)
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Journal Article
PyBEST: Improved functionality and enhanced performance
Boguslawski, Katharina, Brzęk, Filip, Chakraborty, Rahul, Cieślak, Kacper, Jahani, Seyedehdelaram, Leszczyk, Aleksandra, Nowak, Artur, Sujkowski, Emil, Świerczyński, Julian, Ahmadkhani, Somayeh, Kędziera, Dariusz, Kriebel, Maximilian H., Żuchowski, Piotr Szymon, Tecmer, Paweł
Published in Computer physics communications (01.04.2024)
Published in Computer physics communications (01.04.2024)
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Journal Article
Inferring cellular and molecular processes in single-cell data with non-negative matrix factorization using Python, R and GenePattern Notebook implementations of CoGAPS
Johnson, Jeanette A. I., Tsang, Ashley P., Mitchell, Jacob T., Zhou, David L., Bowden, Julia, Davis-Marcisak, Emily, Sherman, Thomas, Liefeld, Ted, Loth, Melanie, Goff, Loyal A., Zimmerman, Jacquelyn W., Kinny-Köster, Ben, Jaffee, Elizabeth M., Tamayo, Pablo, Mesirov, Jill P., Reich, Michael, Fertig, Elana J., Stein-O’Brien, Genevieve L.
Published in Nature protocols (01.12.2023)
Published in Nature protocols (01.12.2023)
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Journal Article
SJARACNe: a scalable software tool for gene network reverse engineering from big data
Khatamian, Alireza, Paull, Evan O, Califano, Andrea, Yu, Jiyang
Published in Bioinformatics (Oxford, England) (01.06.2019)
Published in Bioinformatics (Oxford, England) (01.06.2019)
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Journal Article
Python: An Ecosystem for Scientific Computing
Perez, Fernando, Granger, Brian E., Hunter, John D.
Published in Computing in science & engineering (01.03.2011)
Published in Computing in science & engineering (01.03.2011)
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Journal Article