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Bioinformatic pipelines in Python with Leaf
Napolitano, Francesco, Mariani-Costantini, Renato, Tagliaferri, Roberto
Published in BMC bioinformatics (21.06.2013)
Published in BMC bioinformatics (21.06.2013)
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Journal Article
COBRApy: COnstraints-Based Reconstruction and Analysis for Python
Ebrahim, Ali, Lerman, Joshua A, Palsson, Bernhard O, Hyduke, Daniel R
Published in BMC systems biology (08.08.2013)
Published in BMC systems biology (08.08.2013)
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Journal Article
SPOTting Model Parameters Using a Ready-Made Python Package
Houska, Tobias, Kraft, Philipp, Chamorro-Chavez, Alejandro, Breuer, Lutz
Published in PloS one (17.12.2015)
Published in PloS one (17.12.2015)
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Journal Article
Towards understanding bugs in Python interpreters
Liu, Di, Feng, Yang, Yan, Yanyan, Xu, Baowen
Published in Empirical software engineering : an international journal (01.01.2023)
Published in Empirical software engineering : an international journal (01.01.2023)
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Journal Article
pyPaSWAS: Python-based multi-core CPU and GPU sequence alignment
Warris, Sven, Timal, N. Roshan N., Kempenaar, Marcel, Poortinga, Arne M., van de Geest, Henri, Varbanescu, Ana L., Nap, Jan-Peter
Published in PloS one (02.01.2018)
Published in PloS one (02.01.2018)
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Journal Article
Procrustes: A python library to find transformations that maximize the similarity between matrices
Meng, Fanwang, Richer, Michael, Tehrani, Alireza, La, Jonathan, Kim, Taewon David, Ayers, Paul W., Heidar-Zadeh, Farnaz
Published in Computer physics communications (01.07.2022)
Published in Computer physics communications (01.07.2022)
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Journal Article
PyXtal: A Python library for crystal structure generation and symmetry analysis
Fredericks, Scott, Parrish, Kevin, Sayre, Dean, Zhu, Qiang
Published in Computer physics communications (01.04.2021)
Published in Computer physics communications (01.04.2021)
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Journal Article
Short communication: age2exhume – a MATLAB/Python script to calculate steady-state vertical exhumation rates from thermochronometric ages and application to the Himalaya
van der Beek, Peter, Schildgen, Taylor F.
Published in Geochronology (Göttingen. Online) (16.01.2023)
Published in Geochronology (Göttingen. Online) (16.01.2023)
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Journal Article
Split Pool Ligation-based Single-cell Transcriptome sequencing (SPLiT-seq) data processing pipeline comparison
Kuijpers, Lucas, Hornung, Bastian, van den Hout - van Vroonhoven, Mirjam C. G. N., van IJcken, Wilfred F. J., Grosveld, Frank, Mulugeta, Eskeatnaf
Published in BMC genomics (12.04.2024)
Published in BMC genomics (12.04.2024)
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Journal Article