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    MetPy: A Meteorological Python Library for Data Analysis and Visualization
                                      
                                            May, Ryan M.,                              Goebbert, Kevin H.,                              Thielen, Jonathan E.,                              Leeman, John R.,                              Camron, M. Drew,                              Bruick, Zachary,                              Bruning, Eric C.,                              Manser, Russell P.,                              Arms, Sean C.,                              Marsh, Patrick T.                              
Published in Bulletin of the American Meteorological Society (01.10.2022)
                   
      
      
                                                  Published in Bulletin of the American Meteorological Society (01.10.2022)
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              Journal Article
          
              
          APIScanner - Towards Automated Detection of Deprecated APIs in Python Libraries
                                      
                                            Vadlamani, Aparna,                              Kalicheti, Rishitha,                              Chimalakonda, Sridhar                              
Published in 2021 IEEE/ACM 43rd International Conference on Software Engineering: Companion Proceedings (ICSE-Companion) (01.05.2021)
                   
      
      
                                                  Published in 2021 IEEE/ACM 43rd International Conference on Software Engineering: Companion Proceedings (ICSE-Companion) (01.05.2021)
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              Conference Proceeding
          
              
          pyComBat, a Python tool for batch effects correction in high-throughput molecular data using empirical Bayes methods
                                      
                                            Behdenna, Abdelkader,                              Colange, Maximilien,                              Haziza, Julien,                              Gema, Aryo,                              Appé, Guillaume,                              Azencott, Chloé-Agathe,                              Nordor, Akpéli                              
Published in BMC bioinformatics (07.12.2023)
                   
      
      
                                                  Published in BMC bioinformatics (07.12.2023)
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              Journal Article
          
              
          Pytrf: a python package for finding tandem repeats from genomic sequences
                                      
                                            Du, Lianming,                              Sun, Dalin,                              Chen, Jiahao,                              Zhou, Xinyi,                              Zhao, Kelei,                              Zeng, Qianglin,                              Yang, Nan                              
Published in BMC bioinformatics (04.06.2025)
                   
      
      
                                                  Published in BMC bioinformatics (04.06.2025)
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              Journal Article
          
              
          PyNoetic: A modular python framework for no-code development of EEG brain-computer interfaces
                                      
                                            Singh, Gursimran,                              Chharia, Aviral,                              Upadhyay, Rahul,                              Kumar, Vinay,                              Longo, Luca                              
Published in PloS one (06.08.2025)
                   
      
      
                                                  Published in PloS one (06.08.2025)
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              Journal Article
          
              
          Immunopeptidomics toolkit library (IPTK): a python-based modular toolbox for analyzing immunopeptidomics data
                                      
                                            ElAbd, Hesham,                              Degenhardt, Frauke,                              Koudelka, Tomas,                              Kamps, Ann-Kristin,                              Tholey, Andreas,                              Bacher, Petra,                              Lenz, Tobias L.,                              Franke, Andre,                              Wendorff, Mareike                              
Published in BMC bioinformatics (17.08.2021)
                   
      
      
                                                  Published in BMC bioinformatics (17.08.2021)
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              Journal Article
          
              
          Bridging Python to Silicon: The SODA Toolchain
                                      
                                            Agostini, Nicolas Bohm,                              Curzel, Serena,                              Zhang, Jeff Jun,                              Limaye, Ankur,                              Tan, Cheng,                              Amatya, Vinay,                              Minutoli, Marco,                              Castellana, Vito Giovanni,                              Manzano, Joseph,                              Brooks, David,                              Wei, Gu-Yeon,                              Tumeo, Antonino                              
Published in IEEE MICRO (01.09.2022)
                   
      
      
                                                  Published in IEEE MICRO (01.09.2022)
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              Journal Article
          
              
          PEPMatch: a tool to identify short peptide sequence matches in large sets of proteins
                                      
                                            Marrama, Daniel,                              Chronister, William D.,                              Westernberg, Luise,                              Vita, Randi,                              Koşaloğlu-Yalçın, Zeynep,                              Sette, Alessandro,                              Nielsen, Morten,                              Greenbaum, Jason A.,                              Peters, Bjoern                              
Published in BMC bioinformatics (18.12.2023)
                   
      
      
                                                  Published in BMC bioinformatics (18.12.2023)
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              Journal Article
          
              
          Visual dynamics: a WEB application for molecular dynamics simulation using GROMACS
                                      
                                            Vieira, Ivo Henrique Provensi,                              Botelho, Eduardo Buganemi,                              de Souza Gomes, Thales Junior,                              Kist, Roger,                              Caceres, Rafael Andrade,                              Zanchi, Fernando Berton                              
Published in BMC bioinformatics (22.03.2023)
                   
      
      
                                                  Published in BMC bioinformatics (22.03.2023)
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              Journal Article
          
              
          New Python-based methods for data processing
                                      
                                            Sauter, Nicholas K.,                              Hattne, Johan,                              Grosse-Kunstleve, Ralf W.,                              Echols, Nathaniel                              
Published in Acta crystallographica. Section D, Biological crystallography. (01.07.2013)
                   
      
      
                                                  Published in Acta crystallographica. Section D, Biological crystallography. (01.07.2013)
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              Journal Article
          
              
          Coding recognition of the dose–effect interdependence of small biomolecules encrypted on paired chromatographic-based microassay arrays: Coding recognition of the dose–effect interdependence of small biomolecules encrypted on paired chromatographic-based microassay arrays
                                      
                                            Deng, Yifeng,                              Lin, Zhenpeng,                              Cheng, Yuan                              
Published in Analytical and bioanalytical chemistry (01.08.2022)
                   
      
      
                                                  Published in Analytical and bioanalytical chemistry (01.08.2022)
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              Journal Article
          
              
          diffSph: a Python tool to compute diffuse signals from dwarf spheroidal galaxies
                                      
                                            Vollmann, Martin,                              Welzmüller, Finn,                              Gajović, Lovorka                              
Published in Journal of cosmology and astroparticle physics (01.12.2024)
                   
      
      
                                                  Published in Journal of cosmology and astroparticle physics (01.12.2024)
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              Journal Article